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IMP Reference Guide
develop.d97d4ead1f,2024/11/22
The Integrative Modeling Platform
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Abstract class for containers of particles. More...
#include <IMP/container_base.h>
Inheritance diagram for IMP::Container:Abstract class for containers of particles.
Containers store sets of tuples of particles. The degree of the tuple (i.e. whether each tuple contains one, two, three or four particles) is constant for each container. That is, a SingletonContainer is a set of single particles, a PairContainer is a set of pairs of particles etc.
These sets can come from a variety of sources, such as
Most basically, containers allow you to get their contents (eg SingletonContainer::get_indexes()) or do an operation on their contents IMP_CONTAINER_FOREACH().
Definition at line 46 of file container_base.h.
Public Member Functions | |
| ModelObjectsTemp | do_get_outputs () const override |
| containers don't have outputs More... | |
| virtual ParticleIndexes | get_all_possible_indexes () const =0 |
| Get contained particles. More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| virtual VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
| virtual std::string | get_type_name () const |
Protected Member Functions | |
| Container (Model *m, std::string name="Container %1%") | |
| virtual std::size_t | do_get_contents_hash () const =0 |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemp | do_get_inputs () const =0 |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
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overridevirtual |
containers don't have outputs
Implements IMP::ModelObject.
Definition at line 81 of file container_base.h.
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pure virtual |
Get contained particles.
Get a list of all particles contained in this one, given that the input containers are up to date.
Implemented in IMP::container::ExclusiveConsecutivePairContainer, IMP::container::ClosePairContainer, IMP::container::CloseBipartitePairContainer, IMP::container::ConnectingPairContainer, IMP::container::ConsecutivePairContainer, IMP::container::PairContainerSet, IMP::container::QuadContainerSet, IMP::container::SingletonContainerSet, IMP::container::TripletContainerSet, IMP::container::AllBipartitePairContainer, IMP::atom::BondPairContainer, and IMP::container::AllPairContainer.
| std::size_t IMP::Container::get_contents_hash | ( | ) | const |
Return a hash that can be used to detect when the contents of the container changed. Store the value and then compare against the version next time to detect if it is different.
Definition at line 78 of file container_base.h.
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virtual |
True if the container's contents are not independent from one another, and so it cannot be decomposed into a sum of terms. Examples include connectivity.
Definition at line 88 of file container_base.h.