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IMP Reference Guide  develop.63e71f5352,2022/07/06
The Integrative Modeling Platform
IMP::container::ConsecutivePairContainer Class Reference

A container which contains all consecutive particle pairs from an input list. More...

#include <IMP/container/ConsecutivePairContainer.h>

+ Inheritance diagram for IMP::container::ConsecutivePairContainer:

Detailed Description

A container which contains all consecutive particle pairs from an input list.

If it is assumed that each particle is in at most one such container, then ExclusiveConsecutivePairContainer should be used instead, since it is faster when doing certain computations.

Also see ConsecutivePairFilter.

Definition at line 29 of file ConsecutivePairContainer.h.

Public Member Functions

 ConsecutivePairContainer (Model *m, const ParticleIndexes &ps, std::string name="ConsecutivePairContainer%1%")
 
template<class F >
void apply_generic (F *f) const
 apply to each item in container More...
 
void do_apply (const PairModifier *sm) const override
 
void do_apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const override
 
virtual ModelObjectsTemp do_get_inputs () const override
 
virtual ParticleIndexes get_all_possible_indexes () const override
 Get contained particles. More...
 
virtual ParticleIndexPairs get_indexes () const override
 
virtual ParticleIndexPairs get_range_indexes () const override
 
virtual std::string get_type_name () const override
 
virtual ::IMP::VersionInfo get_version_info () const override
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::PairContainer
void apply (const PairModifier *sm) const
 Apply a PairModifier to the contents. More...
 
void apply_generic (const PairModifier *m) const
 Just use apply() in the base class. More...
 
void apply_generic_moved (const PairModifier *m, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
 Just use apply_moved() in the base class. More...
 
void apply_moved (const PairModifier *sm, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
 Apply a PairModifier to the contents. More...
 
const ParticleIndexPairsget_contents () const
 
- Public Member Functions inherited from IMP::Container
ModelObjectsTemp do_get_outputs () const override
 containers don't have outputs More...
 
std::size_t get_contents_hash () const
 
virtual bool get_is_decomposable () const
 
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Protected Member Functions

virtual std::size_t do_get_contents_hash () const override
 
- Protected Member Functions inherited from IMP::PairContainer
 PairContainer (Model *m, std::string name="PairContainer %1%")
 
virtual bool do_get_provides_access () const
 
- Protected Member Functions inherited from IMP::Container
 Container (Model *m, std::string name="Container %1%")
 
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Additional Inherited Members

- Public Types inherited from IMP::PairContainer
typedef ParticleIndexPair ContainedIndexType
 
typedef ParticleIndexPairs ContainedIndexTypes
 
typedef ParticlePair ContainedType
 
typedef ParticlePairsTemp ContainedTypes
 
typedef PairModifier Modifier
 
typedef const ParticleIndexPairPassContainedIndexType
 

Member Function Documentation

template<class F >
void IMP::container::ConsecutivePairContainer::apply_generic ( F *  f) const

apply to each item in container

Definition at line 53 of file ConsecutivePairContainer.h.

virtual ModelObjectsTemp IMP::container::ConsecutivePairContainer::do_get_inputs ( ) const
overridevirtual

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::ModelObject.

virtual ParticleIndexes IMP::container::ConsecutivePairContainer::get_all_possible_indexes ( ) const
overridevirtual

Get contained particles.

Get a list of all particles contained in this one, given that the input containers are up to date.

Implements IMP::Container.

virtual ParticleIndexPairs IMP::container::ConsecutivePairContainer::get_indexes ( ) const
overridevirtual

Get all the indexes contained in the container.

This should be protected but isn't for compatibility reasons.

External callers should use get_contents().

Implements IMP::PairContainer.

virtual ParticleIndexPairs IMP::container::ConsecutivePairContainer::get_range_indexes ( ) const
overridevirtual

Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from the input list (those that are far apart in addition to those that are close).

Implements IMP::PairContainer.

virtual ::IMP::VersionInfo IMP::container::ConsecutivePairContainer::get_version_info ( ) const
overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 68 of file ConsecutivePairContainer.h.


The documentation for this class was generated from the following file: