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IMP Reference Guide  develop.e1fe35f,2019/09/16
The Integrative Modeling Platform
IMP::QuadContainer Class Referenceabstract

A shared container for Quads. More...

#include <IMP/QuadContainer.h>

+ Inheritance diagram for IMP::QuadContainer:

Detailed Description

A shared container for Quads.

Stores a shared collection of Quads.

Definition at line 37 of file QuadContainer.h.

Public Types

typedef ParticleIndexQuad ContainedIndexType
 
typedef ParticleIndexQuads ContainedIndexTypes
 
typedef ParticleQuad ContainedType
 
typedef ParticleQuadsTemp ContainedTypes
 
typedef QuadModifier Modifier
 
typedef const ParticleIndexQuadPassContainedIndexType
 

Public Member Functions

void apply (const QuadModifier *sm) const
 Apply a SingletonModifier to the contents. More...
 
void apply_generic (const QuadModifier *m) const
 Just use apply() in the base class. More...
 
const ParticleIndexQuadsget_contents () const
 
virtual ParticleIndexQuads get_indexes () const =0
 
ParticleQuad get_particle_quad (unsigned int i) const
 
ParticleQuadsTemp get_particle_quads () const
 
virtual ParticleIndexQuads get_range_indexes () const =0
 
- Public Member Functions inherited from IMP::Container
ModelObjectsTemp do_get_outputs () const
 containers don't have outputs More...
 
virtual ParticleIndexes get_all_possible_indexes () const =0
 Get contained particles. More...
 
std::size_t get_contents_hash () const
 
virtual bool get_is_decomposable () const
 
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
 
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
 
bool get_has_required_score_states () const
 Return whether score states are computed. More...
 
ModelObjectsTemp get_inputs () const
 
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
 
Modelget_model () const
 
ModelObjectsTemp get_outputs () const
 
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
 
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
 
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
virtual VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 
virtual std::string get_type_name () const
 

Protected Member Functions

 QuadContainer (Model *m, std::string name="QuadContainer %1%")
 
virtual void do_apply (const QuadModifier *sm) const =0
 
virtual bool do_get_provides_access () const
 
- Protected Member Functions inherited from IMP::Container
 Container (Model *m, std::string name="Container %1%")
 
virtual std::size_t do_get_contents_hash () const =0
 
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemp do_get_inputs () const =0
 
virtual ModelObjectsTemps do_get_interactions () const
 
virtual void handle_set_has_required_score_states (bool)
 
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

void IMP::QuadContainer::apply ( const QuadModifier sm) const

Apply a SingletonModifier to the contents.

void IMP::QuadContainer::apply_generic ( const QuadModifier m) const

Just use apply() in the base class.

virtual ParticleIndexQuads IMP::QuadContainer::get_indexes ( ) const
pure virtual

Get all the indexes contained in the container.

This should be protected but isn't for compatibility reasons.

External callers should use get_contents().

ParticleQuad IMP::QuadContainer::get_particle_quad ( unsigned int  i) const
Deprecated:
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead and consider using the IMP_CONTAINER_FOREACH() macro.
ParticleQuadsTemp IMP::QuadContainer::get_particle_quads ( ) const
Deprecated:
As of IMP release 2.1. See the IMP Deprecation Policy for more information about deprecation in IMP. Use get_contents() instead.
virtual ParticleIndexQuads IMP::QuadContainer::get_range_indexes ( ) const
pure virtual

Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).


The documentation for this class was generated from the following file: