home
about
news
download
doc
source
systems
tests
bugs
contact
IMP Reference Guide
develop.d97d4ead1f,2024/11/21
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
score_functor
version 20241121.develop.d97d4ead1f
ScoreWithCache.h
Go to the documentation of this file.
1
/**
2
* \file IMP/score_functor/ScoreWithCache.h
3
* \brief A Score on the distance between a pair of particles, with cache.
4
*
5
* Copyright 2007-2022 IMP Inventors. All rights reserved.
6
*/
7
8
#ifndef IMPSCORE_FUNCTOR_SCORE_WITH_CACHE_H
9
#define IMPSCORE_FUNCTOR_SCORE_WITH_CACHE_H
10
11
#include <IMP/score_functor/score_functor_config.h>
12
#include <
IMP/base_types.h
>
13
#include <
IMP/particle_index.h
>
14
#include <
IMP/warning_macros.h
>
15
#include <
IMP/Particle.h
>
16
#include <limits>
17
18
IMPSCOREFUNCTOR_BEGIN_NAMESPACE
19
20
//! A cached functor for computing a distance based score for D particles.
21
/** This is similar to Score but requires callers to call check_cache_valid()
22
in any scoring function evaluation before any of the methods that use
23
the cache. */
24
struct
ScoreWithCache
{
25
// swig gets confused otherwise
26
ScoreWithCache
() {}
27
#ifdef IMP_DOXYGEN
28
//! Make sure the cache is up to date.
29
/** This must be called in any scoring function evaluation before any
30
of the methods that use the cache. */
31
void
check_cache_valid(
Model
*m)
const
;
32
33
//! Return the score at the passed feature size (eg distance).
34
/** The involved particle indexes are passed along.
35
36
\pre get_is_trivially_zero_with_cache() or get_maximum_range() has
37
been called and get_is_trivially_zero_with_cache() is false.
38
*/
39
template
<
unsigned
int
D>
40
double
get_score_with_cache(
Model
*m,
const
Array<D, ParticleIndex>
&p,
41
double
distance)
const
;
42
43
//! Return the score and derivative at the passed feature size (eg distance).
44
/** The derivative is for the feature decreasing.
45
46
\pre get_is_trivially_zero_with_cache() or get_maximum_range() has
47
been called and get_is_trivially_zero_with_cache() is false.
48
*/
49
template
<
unsigned
int
D>
50
DerivativePair
get_score_and_derivative_with_cache(
51
Model
*m,
const
Array<D, ParticleIndex>
&p,
52
double
distance)
const
;
53
#endif
54
55
/** Return true if the function can be easily determined to be zero at the
56
passed squared distance. The default implementation provided here
57
returns false.
58
59
\note That it is squared distance, not distance.
60
*/
61
template
<
unsigned
int
D>
62
bool
get_is_trivially_zero_with_cache
(
Model
*m,
63
const
Array<D, ParticleIndex>
&p,
64
double
squared_distance)
const
{
65
IMP_UNUSED
(m);
66
IMP_UNUSED
(p);
67
IMP_UNUSED
(squared_distance);
68
return
false
;
69
}
70
/** Return an upper bound on the distance at which the score can be
71
non-zero. The default implementation provided here returns infinity. */
72
template
<
unsigned
int
D>
73
double
get_maximum_range
(
74
Model
*m,
const
Array<D, ParticleIndex>
&p)
const
{
75
IMP_UNUSED
(m);
76
IMP_UNUSED
(p);
77
return
std::numeric_limits<double>::infinity();
78
}
79
/** Return the set of particles read when particle p is part of the passed
80
tuples. The default implementation provided here just returns the list
81
containing p. */
82
ModelObjectsTemp
get_inputs
(
83
Model
*m,
const
ParticleIndexes
&pis)
const
{
84
return
IMP::get_particles
(m, pis);
85
}
86
void
show
(std::ostream &)
const
{}
87
};
88
89
IMPSCOREFUNCTOR_END_NAMESPACE
90
91
#endif
/* IMPSCORE_FUNCTOR_SCORE_WITH_CACHE_H */
IMP::score_functor::ScoreWithCache::get_maximum_range
double get_maximum_range(Model *m, const Array< D, ParticleIndex > &p) const
Definition:
ScoreWithCache.h:73
base_types.h
Basic types used by IMP.
particle_index.h
Functions and adaptors for dealing with particle indexes.
IMP::Array
A class to store a fixed array of same-typed values.
Definition:
Array.h:40
IMP::get_particles
ParticlesTemp get_particles(Model *m, const ParticleIndexes &ps)
Get the particles from a list of indexes.
IMP::score_functor::ScoreWithCache
A cached functor for computing a distance based score for D particles.
Definition:
ScoreWithCache.h:24
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:50
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
IMP::score_functor::ScoreWithCache::get_is_trivially_zero_with_cache
bool get_is_trivially_zero_with_cache(Model *m, const Array< D, ParticleIndex > &p, double squared_distance) const
Definition:
ScoreWithCache.h:62
warning_macros.h
Macros to control compiler warnings.
IMP_UNUSED
#define IMP_UNUSED(variable)
Definition:
warning_macros.h:25
IMP::DerivativePair
std::pair< double, double > DerivativePair
A pair representing a function value with its first derivative.
Definition:
types.h:22
Particle.h
Classes to handle individual model particles. (Note that implementation of inline functions is in int...
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition:
core/Hierarchy.h:423
IMP::score_functor::ScoreWithCache::get_inputs
ModelObjectsTemp get_inputs(Model *m, const ParticleIndexes &pis) const
Definition:
ScoreWithCache.h:82