home
about
news
download
doc
source
systems
tests
bugs
contact
IMP Reference Guide
develop.4390929e3e,2024/11/11
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
atom
version 20241111.develop.4390929e3e
CoverBond.h
Go to the documentation of this file.
1
/**
2
* \file IMP/atom/CoverBond.h
3
* \brief Cover a bond with a sphere
4
*
5
* Copyright 2007-2022 IMP Inventors. All rights reserved.
6
*/
7
8
#ifndef IMPATOM_COVER_BOND_H
9
#define IMPATOM_COVER_BOND_H
10
11
#include <IMP/atom/atom_config.h>
12
13
#include <
IMP/PairContainer.h
>
14
#include <
IMP/SingletonContainer.h
>
15
#include <
IMP/SingletonModifier.h
>
16
#include <
IMP/singleton_macros.h
>
17
18
IMPATOM_BEGIN_NAMESPACE
19
20
//! Cover a bond with a sphere
21
/** This is a version of core::CoverRefined optimized for bonds. It is
22
about 4x faster than the general purpose one.
23
*/
24
class
IMPATOMEXPORT
CoverBond
:
public
SingletonModifier
{
25
public
:
26
CoverBond
();
27
28
virtual
void
apply_index
(
Model
*m,
ParticleIndex
p)
const
29
override
;
30
virtual
ModelObjectsTemp
do_get_inputs
(
31
Model
*m,
const
ParticleIndexes
&pis)
const override
;
32
virtual
ModelObjectsTemp
do_get_outputs
(
33
Model
*m,
const
ParticleIndexes
&pis)
const override
;
34
IMP_SINGLETON_MODIFIER_METHODS
(
CoverBond
);
35
IMP_OBJECT_METHODS
(
CoverBond
);
36
;
37
};
38
39
IMP_OBJECTS
(
CoverBond
,
CoverBonds
);
40
41
IMPATOM_END_NAMESPACE
42
43
#endif
/* IMPATOM_COVER_BOND_H */
IMP::SingletonModifier
A base class for modifiers of ParticlesTemp.
Definition:
SingletonModifier.h:32
SingletonModifier.h
A Modifier on ParticlesTemp.
SingletonContainer.h
A container for Singletons.
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Index< ParticleIndexTag >
singleton_macros.h
Macros for various classes.
IMP::ParticleOutputs::do_get_outputs
virtual ModelObjectsTemp do_get_outputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the outputs.
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:50
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
PairContainer.h
A container for Pairs.
IMP_SINGLETON_MODIFIER_METHODS
#define IMP_SINGLETON_MODIFIER_METHODS(Name)
Definition:
singleton_macros.h:124
IMP::ParticleInputs::do_get_inputs
virtual ModelObjectsTemp do_get_inputs(Model *m, const ParticleIndexes &pis) const =0
Overload this method to specify the inputs.
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing lists of object pointers.
Definition:
object_macros.h:44
IMP::SingletonModifier::apply_index
virtual void apply_index(Model *m, ParticleIndex v) const =0
IMP::atom::CoverBond
Cover a bond with a sphere.
Definition:
CoverBond.h:24