IMP.pmi1.restraints Namespace Reference

Classes to handle different kinds of restraints. More...

Detailed Description

Classes to handle different kinds of restraints.

PMI restraints generally wrap IMP restraints. Typical features in PMI restraints are:

• Easy setup: for example, you can usually create one with a PMI Molecule or a slice from one.
• Fast setup from data files. For example you can set up the CrossLinkingMassSpectrometryRestraint by reading in a crosslink file into a database.
• Useful output: reporting functions which are put into log files when running ReplicaExchange.

Namespaces
	basic
	Some miscellaneous simple restraints.
	crosslinking
	Restraints for handling crosslinking data.
	crosslinking_new
	Restraints for handling crosslinking data.
	em
	Restraints for handling electron microscopy maps.
	em2d
	Restraints for handling electron microscopy images.
	npc
	Specialized restraints for modeling the Nuclear Pore Complex.
	parameters
	Restraints for parameters.
	proteomics
	Restraints for handling various kinds of proteomics data.
	saxs
	Restraints for handling small angle x-ray (SAXS) data.
	stereochemistry
	Restraints for keeping correct stereochemistry.

Classes
class	RestraintBase
	Base class for PMI restraints, which wrap IMP.Restraint(s). More...