IMP.pmi1.restraints.RestraintBase Class Reference

Base class for PMI restraints, which wrap IMP.Restraint(s). More...

Inheritance diagram for IMP.pmi1.restraints.RestraintBase:

Detailed Description

Base class for PMI restraints, which wrap IMP.Restraint(s).

Note

This class is only available in Python.

Definition at line 15 of file pmi1/restraints/__init__.py.

Public Member Functions
def	__init__
	Constructor. More...
def	add_to_model
	Add the restraint to the model. More...
def	evaluate
	Evaluate the score of the restraint. More...
def	get_output
	Get outputs to write to stat files. More...
def	get_particles_to_sample
	Get any created particles which should be sampled. More...
def	get_restraint
	Get the primary restraint set. More...
def	get_restraint_for_rmf
	Get the restraint for visualization in an RMF file. More...
def	get_restraint_set
	Get the primary restraint set. More...
def	set_label
	Set the unique label used in outputs and particle/restraint names. More...
def	set_weight
	Set the weight to apply to all internal restraints. More...

Constructor & Destructor Documentation

def IMP.pmi1.restraints.RestraintBase.__init__	(		self,
			m,
			name = None,
			label = None,
			weight = 1.0
	)

Constructor.

Parameters

m	The model object
name	The name of the primary restraint set that is wrapped. This is used for outputs and particle/restraint names and should be set by the child class.
label	A unique label to be used in outputs and particle/restraint names.
weight	The weight to apply to all internal restraints.

Definition at line 24 of file pmi1/restraints/__init__.py.

Member Function Documentation

def IMP.pmi1.restraints.RestraintBase.add_to_model

(

self

)

Add the restraint to the model.

Definition at line 80 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.evaluate

(

self

)

Evaluate the score of the restraint.

Definition at line 86 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.get_output

(

self

)

Get outputs to write to stat files.

Definition at line 110 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.get_particles_to_sample

(

self

)

Get any created particles which should be sampled.

Definition at line 105 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.get_restraint

(

self

)

Get the primary restraint set.

Identical to get_restraint_set.

Definition at line 96 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.get_restraint_for_rmf

(

self

)

Get the restraint for visualization in an RMF file.

Definition at line 100 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.get_restraint_set

(

self

)

Get the primary restraint set.

Definition at line 91 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.set_label	(		self,
			label
	)

Set the unique label used in outputs and particle/restraint names.

Parameters

label

Label

Definition at line 54 of file pmi1/restraints/__init__.py.

def IMP.pmi1.restraints.RestraintBase.set_weight	(		self,
			weight
	)

Set the weight to apply to all internal restraints.

Parameters

weight

Weight

Definition at line 72 of file pmi1/restraints/__init__.py.

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The documentation for this class was generated from the following file:

• pmi1/restraints/__init__.py