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IMP Reference Guide
2.20.0
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
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include
IMP
em2d
version 2.20.0
domino_filter_tables.h
Go to the documentation of this file.
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/**
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* \file IMP/em2d/domino_filter_tables.h
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* \brief Managing of projection overlap filter
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*
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* Copyright 2007-2022 IMP Inventors. All rights reserved.
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*
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*/
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#ifndef IMPEM2D_DOMINO_FILTER_TABLES_H
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#define IMPEM2D_DOMINO_FILTER_TABLES_H
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#include "
IMP/em2d/domino_particle_states.h
"
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#include "
IMP/domino/Subset.h
"
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#include "
IMP/domino/subset_filters.h
"
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#include "
IMP/log.h
"
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IMPEM2D_BEGIN_NAMESPACE
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/*! Table to create DistanceFilters on demand
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*/
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class
IMPEM2DEXPORT
DistanceFilterTable
:
public
domino::SubsetFilterTable
{
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protected
:
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domino::Subset
my_subset_;
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Pointer<domino::ParticleStatesTable>
ps_table_;
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double
max_distance_;
// max distance tolerated between the particles
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public
:
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DistanceFilterTable
(
const
domino::Subset
&subset_to_act_on,
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domino::ParticleStatesTable
*ps_table,
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double
max_distance)
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: my_subset_(subset_to_act_on),
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ps_table_(ps_table),
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max_distance_(max_distance) {};
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void
show
(std::ostream &out = std::cout)
const
{
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out <<
"DistanceFilterTable"
<< std::endl;
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};
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virtual
IMP::domino::SubsetFilter
*
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get_subset_filter
(
const
IMP::domino::Subset
&s,
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const
IMP::domino::Subsets
&excluded)
const
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override
;
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virtual
double
get_strength
(
const
IMP::domino::Subset
&s,
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const
IMP::domino::Subsets
&excluded)
const
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override
;
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IMP_OBJECT_METHODS
(
DistanceFilterTable
);
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};
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IMP_OBJECTS
(
DistanceFilterTable
,
DistanceFilterTables
);
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IMPEM2D_END_NAMESPACE
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#endif
/* IMPEM2D_DOMINO_FILTER_TABLES_H */
IMP::domino::SubsetFilterTable::get_subset_filter
virtual SubsetFilter * get_subset_filter(const Subset &s, const Subsets &prior_subsets) const =0
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
subset_filters.h
A Bayesian inference-based sampler.
IMP::domino::Subset
Represent a subset of the particles being optimized.
Definition:
Subset.h:33
domino_particle_states.h
Particles states for a rigid body that is going to be projected.
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:42
IMP::Pointer< domino::ParticleStatesTable >
IMP::em2d::DistanceFilterTable
Definition:
domino_filter_tables.h:22
IMP::domino::SubsetFilterTable
Definition:
subset_filters.h:78
IMP::domino::ParticleStatesTable
Definition:
particle_states.h:73
IMP::domino::SubsetFilterTable::get_strength
virtual double get_strength(const Subset &s, const Subsets &prior_subsets) const =0
The strength is a rough metric of how this filter restricts the subset.
Subset.h
A Bayesian inference-based sampler.
IMP::core::show
std::ostream & show(Hierarchy h, std::ostream &out=std::cout)
Print the hierarchy using a given decorator to display each node.
Definition:
core/Hierarchy.h:423
IMP_OBJECTS
#define IMP_OBJECTS(Name, PluralName)
Define the types for storing lists of object pointers.
Definition:
object_macros.h:44
IMP::domino::SubsetFilter
Definition:
subset_filters.h:44
log.h
Logging and error reporting support.