- c -

• CAAngleRestraint() : IMP::atom::CAAngleRestraint
• CADihedralRestraint() : IMP::atom::CADihedralRestraint
• calc_all_voxel2loc() : IMP::em::DensityMap
• calc_symm_score() : IMP::cnmultifit::MolCnSymmAxisDetector
• calcRMS() : IMP::em::DensityMap
• calculate_derivative_distribution() : IMP::saxs::DeltaDistributionFunction
• calculate_I0() : IMP::saxs::Profile
• calculate_particles_bounding_box() : IMP::em::SampledDensityMap
• calculate_profile() : IMP::saxs::Profile
• calculate_profile_constant_form_factor() : IMP::saxs::Profile
• calculate_profile_partial() : IMP::saxs::Profile
• cap_velocity_component() : IMP::atom::MolecularDynamics , IMP::spb::MolecularDynamicsWithWte
• CCDLoopClosure() : IMP::kinematics::CCDLoopClosure
• center_model_on_target_density() : IMP.bayesianem.restraint.GaussianEMRestraintWrapper
• center_on_target_density() : IMP.bayesianem.restraint.GaussianEMRestraintWrapper
• center_target_density_on_model() : IMP.bayesianem.restraint.GaussianEMRestraintWrapper
• center_target_density_on_origin() : IMP.bayesianem.restraint.GaussianEMRestraintWrapper
• CenteredMat() : IMP::em2d::CenteredMat
• CentroidOfRefined() : IMP::core::CentroidOfRefined
• ChainPDBSelector() : IMP::atom::ChainPDBSelector
• ChainStatisticsOptimizerState() : IMP::npctransport::ChainStatisticsOptimizerState
• CHARMMParameters() : IMP::atom::CHARMMParameters
• CHARMMPatch() : IMP::atom::CHARMMPatch
• CHARMMResidueTopology() : IMP::atom::CHARMMResidueTopology
• CHARMMStereochemistryRestraint() : IMP::atom::CHARMMStereochemistryRestraint
• check_cache_valid() : IMP::score_functor::ScoreWithCache
• check_cross_link_consistency() : IMP.pmi.io.crosslink.CrossLinkDataBase
• check_if_is_connected() : IMP.EMageFit.database.Database2
• check_keys() : IMP.pmi.io.crosslink.CrossLinkDataBaseKeywordsConverter , IMP.pmi1.io.crosslink.CrossLinkDataBaseKeywordsConverter
• check_root() : IMP.pmi1.representation.Representation
• check_runnable_python_module() : IMP.test.TestCase
• check_standard_object_methods() : IMP.test.TestCase
• check_unary_function_deriv() : IMP.test.TestCase
• check_unary_function_min() : IMP.test.TestCase
• ChildrenRefiner() : IMP::core::ChildrenRefiner
• classify_crosslinks_by_score() : IMP.pmi.io.crosslink.CrossLinkDataBase
• clear() : IMP::container::DynamicListPairContainer , IMP::container::DynamicListQuadContainer , IMP::container::DynamicListSingletonContainer , IMP::container::DynamicListTripletContainer , IMP::container::ListPairContainer , IMP::container::ListQuadContainer , IMP::container::ListSingletonContainer , IMP::container::ListTripletContainer , IMP::em::ImageHeader , IMP::misc::LogPairScore , IMP::multifit::GeometricHash< T, D >
• clear_caches() : IMP::core::ExcludedVolumeRestraint , IMP::core::MinimumRestraint , IMP::Object
• clear_data() : IMP::kmeans::KMeans
• clear_particle_caches() : IMP::Model
• clear_range_cache() : IMP::AttributeOptimizer
• close() : IMP.EMageFit.database.Database2
• CloseBipartitePairContainer() : IMP::container::CloseBipartitePairContainer
• ClosedCubicSpline() : IMP::core::ClosedCubicSpline
• ClosePairContainer() : IMP::container::ClosePairContainer
• ClosePairsPairScore() : IMP::core::ClosePairsPairScore
• cluster() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• clustering() : IMP.pmi.macros.AnalysisReplicaExchange0 , IMP.pmi1.macros.AnalysisReplicaExchange0
• ClusterSet() : IMP::em2d::ClusterSet
• coarse_hierarchy() : IMP.pmi1.representation.Representation
• CollisionCrossSection() : IMP::em2d::CollisionCrossSection
• Color() : IMP::display::Color
• CompositeJoint() : IMP::kinematics::CompositeJoint
• CompositeRestraint() : IMP::npc::CompositeRestraint , IMP::pmi1::CompositeRestraint , IMP::pmi::CompositeRestraint
• compute_chisquare_derivative() : IMP::saxs::DerivativeCalculator
• compute_cluster_center() : IMP.pmi.macros.AnalysisReplicaExchange , IMP.pmi1.macros.AnalysisReplicaExchange
• compute_initial_scores() : IMP::bayesianem::GaussianEMRestraint , IMP::isd::GaussianEMRestraint
• compute_offset() : IMP::saxs::ProfileFitter< ScoringFunctionT >
• compute_scale_factor() : IMP::saxs::ProfileFitter< ScoringFunctionT >
• compute_score() : IMP::saxs::ProfileFitter< ScoringFunctionT > , IMP::saxs::WeightedProfileFitter< ScoringFunctionT >
• compute_xyz_top() : IMP::em::DensityHeader
• Cone3D() : IMP::algebra::Cone3D
• Configuration() : IMP::Configuration
• ConfigurationSetRMSDMetric() : IMP::statistics::ConfigurationSetRMSDMetric
• ConfigurationSetXYZEmbedding() : IMP::statistics::ConfigurationSetXYZEmbedding
• connect() : IMP.EMageFit.database.Database2
• ConnectingPairContainer() : IMP::container::ConnectingPairContainer
• ConnectivityRestraint() : IMP::core::ConnectivityRestraint
• ConsecutivePairFilter() : IMP::container::ConsecutivePairFilter
• ConstantRestraint() : IMP::core::ConstantRestraint
• constrain_symmetry() : IMP.pmi.dof.DegreesOfFreedom
• convolution() : IMP::em::CoarseConvolution
• copy_map() : IMP::em::DensityMap
• Cosine() : IMP::core::Cosine
• CoverRefined() : IMP::core::CoverRefined
• create() : IMP::em2d::ProjectionMask , IMP.EMageFit.database.Database2 , IMP::npctransport::ParticleFactory , IMP::rmf::SimpleLoadLink< O >
• create_angles() : IMP::atom::CHARMMParameters
• create_backbone_restraint() : IMP::npctransport::Scoring
• create_bounding_volume_restraint() : IMP::npctransport::Scoring
• create_clone() : IMP::atom::Hierarchy , IMP::atom::Selection , IMP.pmi.topology.Molecule
• create_clone_one() : IMP::atom::Hierarchy
• create_close_beads_container() : IMP::npctransport::Scoring
• create_coarse_assembly() : IMP.EMageFit.domino_model.DominoModel
• create_components_from_rmf() : IMP.pmi1.representation.Representation
• create_copy() : IMP.pmi.topology.Molecule
• create_current_decomposition() : IMP::PairScore , IMP::QuadScore , IMP::Restraint , IMP::SingletonScore , IMP::TripletScore
• create_decomposition() : IMP::Restraint
• create_density_map() : IMP::em::DensityMap
• create_dihedrals() : IMP::atom::CHARMMParameters
• create_entry() : IMP.isd.Analysis.Analysis
• create_flexible_beads() : IMP.pmi.dof.DegreesOfFreedom
• create_fragment() : IMP::atom::Hierarchy
• create_hierarchy() : IMP::atom::CHARMMTopology
• create_main_chain_mover() : IMP.pmi.dof.DegreesOfFreedom
• create_maps_for_resampling() : IMP::em2d::PolarResamplingParameters
• create_mask() : IMP::em2d::MasksManager
• create_masks() : IMP::em2d::MasksManager
• create_membrane_density() : IMP.pmi.restraints.basic.MembraneRestraint
• create_merge_tree() : IMP.EMageFit.domino_model.DominoModel
• create_molecule() : IMP.pmi.topology.State
• create_new_keyword() : IMP.pmi.io.crosslink.CrossLinkDataBase
• create_non_modeled_component() : IMP.pmi1.representation.Representation
• create_nuisance_mover() : IMP.pmi.dof.DegreesOfFreedom
• create_particles_in_box() : IMP.test.TestCase
• create_point_particle() : IMP.test.TestCase
• create_predicates_pair_restraint() : IMP::npctransport::Scoring
• create_psi() : IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint , IMP.pmi1.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
• create_representation() : IMP.pmi.mmcif.ProtocolOutput , IMP.pmi1.mmcif.ProtocolOutput
• create_restraints() : IMP::core::IncrementalScoringFunction , IMP::ScoringFunction
• create_restraints_for_rmf() : IMP.pmi.restraints.crosslinking.AtomicCrossLinkMSRestraint , IMP.pmi1.restraints.crosslinking.AtomicCrossLinkMSRestraint
• create_rigid_body() : IMP.pmi.dof.DegreesOfFreedom
• create_rotational_symmetry() : IMP.pmi1.representation.Representation
• create_scoring_function() : IMP::Restraint
• create_set_from_file() : IMP.pmi.io.crosslink.CrossLinkDataBase
• create_sigma() : IMP.pmi.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint , IMP.pmi1.restraints.crosslinking.CrossLinkingMassSpectrometryRestraint
• create_slab_restraint() : IMP::npctransport::Scoring
• create_state() : IMP.pmi.topology.System
• create_super_rigid_body() : IMP.pmi.dof.DegreesOfFreedom
• create_table() : IMP.EMageFit.database.Database2
• create_temperatures() : IMP::mpi::ReplicaExchange
• create_topology() : IMP::atom::CHARMMParameters
• create_transformed_component() : IMP.pmi.mmcif.ProtocolOutput , IMP.pmi1.mmcif.ProtocolOutput , IMP.pmi1.representation.Representation
• create_view() : IMP.EMageFit.database.Database2
• create_z_bias_restraint() : IMP::npctransport::Scoring
• CreateLogContext() : IMP::CreateLogContext
• CrossLinkMSRestraint() : IMP::isd::CrossLinkMSRestraint
• CysteineCrossLinkRestraint() : IMP::isd::CysteineCrossLinkRestraint