A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

A

Index (IMP)

PointGeometry (IMP::display)

SingletonStatistical (IMP::score_functor)

AddBoolFlag (IMP)

DensityHeader (IMP::em)

IndexException (IMP)

PointToSphereDistance (IMP::score_functor)

SitesGeometry (IMP::npctransport)

AddFloatFlag (IMP)

DensityMap (IMP::em)

IndexStates (IMP::domino)

PolarResamplingParameters (IMP::em2d)

SitesPairScore (IMP::npctransport)

AddIntFlag (IMP)

DependencyScoreState (IMP::domino)

IndexVector (IMP)

PolygonGeometry (IMP::display)

SitesPairScoreParameters (IMP::npctransport)

AddScores (IMP::score_functor)

DerivativeAccumulator (IMP)

InitialDockingFromXlinks (IMP.EMageFit.buildxlinks)

PoreRadiusSingletonScore (IMP::npctransport)

SkinSurfaceGeometry (IMP::display)

AddStringFlag (IMP)

DerivativeCalculator (IMP::saxs)

InputAdaptor (IMP)

PoreSideVolumeLocationRestraint (IMP::npc)

SlabWithCylindricalPore (IMP::npctransport)

AdvancedFlag (IMP)

DerivativesFromRefined (IMP::core)

InternalCoordinatesConstraint (IMP::pmi1)

PPDBSelector (IMP::atom)

SlabWithCylindricalPorePairScore (IMP::npctransport)

Alignment (IMP.pmi.analysis)

DerivativesToRefined (IMP::core)

InternalException (IMP)

Precision (IMP.pmi.analysis)

SlabWithCylindricalPoreWireGeometry (IMP::npctransport)

Alignment (IMP.pmi1.analysis)

DiameterRestraint (IMP::core)

IntsOrder (IMP::em2d)

Precision (IMP.pmi1.analysis)

SlabWithPore (IMP::npctransport)

AlignmentClustering (IMP.multifit.cluster)

DiameterRgyrRestraint (IMP::spb)

IOException (IMP)

PredicatePairsRestraint (IMP::container)

SlabWithToroidalPore (IMP::npctransport)

AlignSymmetric (IMP::cnmultifit)

Diffusion (IMP::atom)

IsCollisionPairPredicate (IMP::core)

PredicateQuadsRestraint (IMP::container)

SlabWithToroidalPorePairScore (IMP::npctransport)

AllBipartitePairContainer (IMP::container)

Dihedral (IMP::atom)

ISDRestraint (IMP::spb)

PredicateSingletonScore (IMP::core)

SlabWithToroidalPoreWireGeometry (IMP::npctransport)

AllMol2Selector (IMP::atom)

DihedralAngleRevoluteJoint (IMP::kinematics)

ISDRestraint (IMP::isd)

PredicateSingletonsRestraint (IMP::container)

Slice (IMP::domino)

AllPairContainer (IMP::container)

DihedralMover (IMP::kinematics)

IsosurfaceGeometry (IMP::display)

PredicateTripletsRestraint (IMP::container)

SmoothingFunction (IMP::atom)

AllPDBSelector (IMP::atom)

DihedralRestraint (IMP::core)

J

PrincipalComponentAnalysisD (IMP::algebra)

Soap (IMP::score_functor)

AllSamePairPredicate (IMP::core)

DihedralSingletonScore (IMP::atom)

PrismaticJoint (IMP::kinematics)

SoapPairFilter (IMP::atom)

AllSameQuadPredicate (IMP::core)

Direction (IMP::core)

JaccardDistanceMatrix (IMP.pmi.io.crosslink)

ProbabilisticAnchorGraph (IMP::multifit)

SoftCylinderPairScore (IMP::misc)

AllSameSingletonPredicate (IMP::core)

DirectionalDOF (IMP::kinematics)

JaccardDistanceMatrix (IMP.pmi1.io.crosslink)

ProbabilisticSubsetFilterTable (IMP::domino)

SoftSpherePairScore (IMP::core)

AllSameTripletPredicate (IMP::core)

DirectionAngle (IMP::core)

JeffreysPrior (IMP.pmi.restraints.parameters)

ProcessOutput (IMP.pmi.output)

SoftSubSurfacePairScore (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics)

DirectionMover (IMP::core)

JeffreysPrior (IMP.pmi1.restraints.parameters)

ProcessOutput (IMP.pmi1.output)

SoftSuperSurfacePairScore (IMP::core)

AmbiguousCompositeRestraint (IMP.pmi1.restraints.proteomics)

DirectorObjectChecker (IMP.test)

JeffreysRestraint (IMP::isd)

Profile (IMP::saxs)

SoftwareProvenance (IMP::core)

AmbiguousNOERestraint (IMP::isd)

DiscreteSampler (IMP::domino)

Joint (IMP::kinematics)

ProfileClustering (IMP::saxs)

SolventAccessibleSurface (IMP::saxs)

AmbiguousRestraint (IMP::isd)

DisjointSetsSubsetFilterTable (IMP::domino)

JPGImageReaderWriter (IMP::em2d)

ProfileFitter (IMP::saxs)

SparseGrid3D (IMP::algebra)

Analysis (IMP.isd.Analysis)

DistanceFilter (IMP::em2d)

K

Profiler (IMP::benchmark)

SparseGridStorageD (IMP::algebra)

AnalysisReplicaExchange (IMP.pmi.macros)

DistanceFilterTable (IMP::em2d)

ProjectingOptions (IMP::em2d)

SparseSymmetricPairMemoizer (IMP)

AnalysisReplicaExchange (IMP.pmi1.macros)

DistanceMask (IMP::em)

KClosePairsPairScore (IMP::core)

ProjectingParameters (IMP::em2d)

SparseUnboundedGrid3D (IMP::algebra)

AnalysisReplicaExchange0 (IMP.pmi.macros)

DistancePairScore (IMP::score_functor)

KernelParameters (IMP::em)

ProjectionFinder (IMP::em2d)

SparseUnboundedGridD (IMP::algebra)

AnalysisReplicaExchange0 (IMP.pmi1.macros)

DistancePairScore (IMP::core)

Key (IMP)

ProjectionMask (IMP::em2d)

SphereD (IMP::algebra)

AnchorsData (IMP::multifit)

DistancePairScoreWithCache (IMP::score_functor)

KinematicForest (IMP::kinematics)

ProjectionParameters (IMP::em2d)

SphereDistance (IMP::score_functor)

AnchorToCylidnricalPorePairScore (IMP::npctransport)

DistanceRestraint (IMP.pmi.restraints.basic)

KinematicForestScoreState (IMP::kinematics)

ProjectionParametersScoreState (IMP::em2d)

SphereDistancePairScore (IMP::core)

AndPDBSelector (IMP::atom)

DistanceRestraint (IMP.pmi1.restraints.basic)

KinematicNode (IMP::kinematics)

ProjectionStates (IMP::em2d)

SphereDistanceToSingletonScore (IMP::core)

Angle (IMP::atom)

DistanceRestraint (IMP::core)

KinkPairScore (IMP::spb)

ProteinChainRestraint (IMP::npc)

SphereGeometry (IMP::display)

AngleRestraint (IMP::core)

DistanceRMSDMetric (IMP::spb)

KMeans (IMP::kmeans)

ProteinContactRestraint (IMP::npc)

SpherePatch3D (IMP::algebra)

AngleSingletonScore (IMP::atom)

DistanceTerminiRestraint (IMP::spb)

L

ProteinKinematics (IMP::kinematics)

SphericalVector3D (IMP::algebra)

AngleTripletScore (IMP::core)

DistanceToPointRestraint (IMP.pmi.restraints.basic)

ProteinLigandAtomPairScore (IMP::atom)

SpiderHeader (IMP::em)

AngularVelocity (IMP::atom)

DistanceToPointRestraint (IMP.pmi1.restraints.basic)

LabelGeometry (IMP::display)

ProteinLigandRestraint (IMP::atom)

SpiderImageReaderWriter (IMP::em2d)

ApplicationTestCase (IMP.test)

DistributePairsScoreState (IMP::container)

LangevinThermostatOptimizerState (IMP::atom)

ProteinProximityRestraint (IMP::npc)

SpiderMapReaderWriter (IMP::em)

ArgumentParser (IMP)

DistributeQuadsScoreState (IMP::container)

LateralSurfaceConstraint (IMP::core)

ProteinsAnchorsSamplingSpace (IMP::multifit)

State (IMP::atom)

Array (IMP)

DistributeSingletonsScoreState (IMP::container)

LeavesRefiner (IMP::core)

ProteomicsData (IMP::multifit)

State (IMP.mmcif.util)

AssemblyHeader (IMP::multifit)

DistributeTripletsScoreState (IMP::container)

LennardJones (IMP::atom)

ProteomicsEMAlignmentAtomic (IMP::multifit)

State (IMP.pmi.topology)

AssemblySymmetryByDihedralRestraint (IMP::npc)

Distribution (IMP::saxs)

LennardJonesPairScore (IMP::atom)

ProtocolOutput (IMP.pmi1.output)

StateAdaptor (IMP::misc)

AssemblySymmetryByDistanceRestraint (IMP::npc)

Distribution (IMP::isd)

LessPairBySecond (IMP::em2d)

ProtocolOutput (IMP.pmi.mmcif)

StatHierarchyHandler (IMP.pmi1.output)

Assignment (IMP::domino)

DockOrder (IMP.EMageFit.buildxlinks)

Line3D (IMP::algebra)

ProtocolOutput (IMP.pmi1.mmcif)

StatHierarchyHandler (IMP.pmi.output)

AssignmentContainer (IMP::domino)

DOF (IMP::kinematics)

Linear (IMP::core)

ProtocolOutput (IMP.pmi.output)

Statistical (IMP::score_functor)

AssignmentsTable (IMP::domino)

DOFsSampler (IMP::kinematics)

Linear1DFunction (IMP::isd)

Provenance (IMP::core)

StatisticalPairScore (IMP::core)

AsymUnit (IMP.pmi.mmcif)

DOFValues (IMP::kinematics)

LinearFit2D (IMP::algebra)

Provenanced (IMP::core)

Statistics (IMP.isd.Statistics)

AsymUnit (IMP.pmi1.mmcif)

Domain (IMP::atom)

LinearInteraction (IMP::npctransport)

PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry)

Statistics (IMP::npctransport)

Atom (IMP::atom)

DominoModel (IMP.EMageFit.domino_model)

LinearInteractionPairScore (IMP::npctransport)

PseudoAtomicRestraint (IMP.pmi1.restraints.stereochemistry)

SteepestDescent (IMP::core)

AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking)

DominoSampler (IMP::domino)

LinearLowerBound (IMP::score_functor)

PymolWriter (IMP::display)

StereochemistryPairFilter (IMP::atom)

AtomicCrossLinkMSRestraint (IMP.pmi1.restraints.crosslinking)

Dope (IMP::score_functor)

LinearSoftSpherePairScore (IMP::npctransport)

PythonDirectedGraph (IMP)

Stopwatch (IMP.pmi.tools)

AtomicCrossLinkMSRestraint (IMP::isd)

DopePairScore (IMP::atom)

LinearVelocity (IMP::atom)

PythonExampleConstraint (IMP.example)

Stopwatch (IMP.pmi1.tools)

ATOMPDBSelector (IMP::atom)

DummyRestraint (IMP::em2d)

LinearWellPairScore (IMP::npctransport)

PythonExamplePairScore (IMP.example)

StructureProvenance (IMP::core)

AtomType (IMP::atom)

DummyRestraint (IMP::multifit)

ListAssignmentContainer (IMP::domino)

PythonExampleRestraint (IMP.example)

StructureSource (IMP::atom)

AtomTypePDBSelector (IMP::atom)

DynamicListPairContainer (IMP::container)

ListAssignmentsTable (IMP::domino)

PythonExampleSingletonModifier (IMP.example)

StructureWarning (IMP.pmi)

AttributeDistancePairScore (IMP::spb)

DynamicListQuadContainer (IMP::container)

ListPairContainer (IMP::container)

PythonExampleUnaryFunction (IMP.example)

StudentTRestraint (IMP::isd)

AttributeOptimizer (IMP)

DynamicListSingletonContainer (IMP::container)

ListQuadContainer (IMP::container)

Q

Subset (IMP::domino)

AttributeSingletonPredicate (IMP::core)

DynamicListTripletContainer (IMP::container)

ListSingletonContainer (IMP::container)

SubsetFilter (IMP::domino)

AverageDistanceLinkage (IMP::em2d)

DynamicNearestNeighbor3D (IMP::algebra)

ListSubsetFilterTable (IMP::domino)

QuadConstraint (IMP::core)

SubsetFilterTable (IMP::domino)

B

E

ListTripletContainer (IMP::container)

QuadContainer (IMP)

SubsetMover (IMP::core)

LoadLink (IMP::rmf)

QuadContainerAdaptor (IMP)

Surface (IMP::core)

BackbonePDBSelector (IMP::atom)

EdgePairGeometry (IMP::core)

LocalPlanner (IMP::kinematics)

QuadContainerSet (IMP::container)

SurfaceDepthPairScore (IMP::core)

BallMover (IMP::symmetry)

EdgePairsGeometry (IMP::core)

LocalWorker (IMP.parallel)

QuadContainerStatistics (IMP::container)

SurfaceDepthPairScore (IMP::score_functor)

BallMover (IMP::core)

ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry)

LogEmbeddingD (IMP::algebra)

QuadModifier (IMP)

SurfaceDistancePairScore (IMP::score_functor)

BerendsenThermostatOptimizerState (IMP::atom)

ElasticNetworkRestraint (IMP.pmi1.restraints.stereochemistry)

LogHolder (IMP.isd.demux_trajs)

QuadPredicate (IMP)

SurfaceDistancePairScore (IMP::core)

BinormalTerm (IMP::core)

ElectronMicroscopy2D (IMP.pmi.restraints.em2d)

LognormalAmbiguousRestraint (IMP::isd)

QuadraticClosePairsFinder (IMP::core)

SurfaceGeometry (IMP::core)

BipartitePairsStatisticsOptimizerState (IMP::npctransport)

ElectronMicroscopy2D (IMP.pmi1.restraints.em2d)

LogNormalMover (IMP::core)

QuadRestraint (IMP::core)

SurfaceGeometryConstraint (IMP::core)

BiStableDistanceRestraint (IMP.pmi.restraints.basic)

ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d)

LognormalRestraint (IMP::isd)

QuadsConstraint (IMP::container)

SurfaceHeightPairScore (IMP::score_functor)

BiStableDistanceRestraint (IMP.pmi1.restraints.basic)

ElectronMicroscopy2D_FFT (IMP.pmi1.restraints.em2d)

LogPairScore (IMP::misc)

QuadScore (IMP)

SurfaceHeightPairScore (IMP::core)

BivariateFunction (IMP::isd)

ElementTable (IMP::atom)

LogWrapper (IMP::isd)

QuadsOptimizerState (IMP::container)

SurfaceMeshGeometry (IMP::display)

BodyStatisticsOptimizerState (IMP::npctransport)

Ellipsoid3D (IMP::algebra)

LoopStatistical (IMP::score_functor)

QuadsRestraint (IMP::container)

SurfaceMover (IMP::core)

Bond (IMP::atom)

EllipsoidGeometry (IMP::display)

LoopStatisticalPairScore (IMP::atom)

QuasiNewton (IMP::gsl)

SurfacesGeometry

ForceFieldParameters::Bond (IMP::atom)

EM2DRestraint (IMP::spb)

LowestRefinedPairScore (IMP::misc)

R

SurfaceShellDensityMap (IMP::em)

BondAngleRevoluteJoint (IMP::kinematics)

Em2DRestraint (IMP::em2d)

LRUCache (IMP)

SurfaceSymmetryConstraint (IMP::core)

Bonded (IMP::atom)

Em2DRestraintParameters (IMP::em2d)

M

RadialDistributionFunction (IMP::saxs)

SurfaceTetheredChain (IMP::core)

BondedPairFilter (IMP::atom)

EM2DScore (IMP::em2d)

RadiusDependentDistanceMask (IMP::em)

Switching (IMP::isd)

BondEndpointsRefiner (IMP::atom)

Embedding (IMP::statistics)

Manager (IMP.parallel)

RadiusOfGyrationRestraint (IMP::saxs)

Symmetric (IMP::pmi1)

BondGeometry (IMP::atom)

EMReaderWriter (IMP::em)

ManagerCommunicator (IMP.parallel.manager_communicator)

RadiusOfGyrationRestraint (IMP::multifit)

Symmetric (IMP::pmi)

BondGraph (IMP::atom)

Ensemble (IMP.mmcif.util)

MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink)

RAII (IMP)

SymmetryRestraint (IMP.pmi1.restraints.stereochemistry)

BondPairContainer (IMP::atom)

Ensemble (IMP::multifit)

MapCrossLinkDataBaseOnStructure (IMP.pmi1.io.crosslink)

RangeViewAssignmentContainer (IMP::domino)

SymmetryRestraint (IMP.pmi.restraints.stereochemistry)

BondsGeometry (IMP::atom)

EnsembleGenerator (IMP::multi_state)

MapDistanceTransform (IMP::em)

RatioVolatilityScore (IMP::saxs)

System (IMP.pmi.topology)

BondSingletonScore (IMP::atom)

Entity (IMP.pmi.mmcif)

MapReaderWriter (IMP::em)

ReadAssignmentContainer (IMP::domino)

T

BoundedGridRangeD (IMP::algebra)

Entity (IMP.pmi1.mmcif)

MarginalHBondRestraint (IMP::isd)

ReadHDF5AssignmentContainer (IMP::domino)

BoundingBoxD (IMP::algebra)

Entry (IMP.isd.Entry)

MarginalNOERestraint (IMP::isd)

RecursiveAssignmentsTable (IMP::domino)

TableRefiner (IMP::core)

BoundingBoxGeometry (IMP::display)

EnvelopeFitRestraint (IMP::em)

MasksManager (IMP::em2d)

RecursivePartitionalClusteringEmbedding (IMP::statistics)

TALOSReader (IMP.isd.TALOSReader)

BoxedMover (IMP::spb)

EnvelopePenetrationRestraint (IMP::em)

Mass (IMP::atom)

RecursivePartitionalClusteringMetric (IMP::statistics)

TALOSRestraint (IMP::isd)

BoxSweepClosePairsFinder (IMP::core)

EnvelopeScore (IMP::em)

MatchTemplateResult (IMP::em2d)

RecursiveStates (IMP::domino)

TAMDCentroid (IMP::atom)

BranchAndBoundAssignmentsTable (IMP::domino)

EqualitySubsetFilterTable (IMP::domino)

MaxVectorKDMetric (IMP::algebra)

RefCountChecker (IMP.test)

TAMDParticle (IMP::atom)

BranchAndBoundSampler (IMP::domino)

EquivalenceAndExclusionSubsetFilterTable (IMP::domino)

MCCGSampler (IMP::core)

Reference (IMP::core)

TempResidue (IMP.pmi.topology)

BrownianDynamics (IMP::atom)

EquivalenceSubsetFilterTable (IMP::domino)

MeanAbsoluteDifference (IMP::em2d)

ReferenceFrame3D (IMP::algebra)

TestCase (IMP.test)

BrownianDynamicsTAMD (IMP::atom)

Error (IMP.parallel)

MembraneExclusionRestraint (IMP.pmi.restraints.npc)

ReferenceFrameGeometry (IMP::display)

TextInput (IMP)

BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport)

EuclideanMetric (IMP::statistics)

MembraneExclusionRestraint (IMP.pmi1.restraints.npc)

ReferenceFrameToText (IMP.EMageFit.imp_general.io)

TextOutput (IMP)

BuildModel (IMP.pmi1.macros)

EuclideanVectorKDMetric (IMP::algebra)

MembraneExclusionRestraint (IMP::npc)

RefinedPairsPairScore (IMP::core)

TextWriter (IMP::display)

BuildModel1 (IMP.pmi1.macros)

LinearInteractionPairScore::EvaluationCache (IMP::npctransport)

MembraneRestraint (IMP.pmi.restraints.basic)

Refiner (IMP)

ThreeToOneConverter (IMP.pmi1.tools)

BuildSystem (IMP.pmi.macros)

EvaluationState (IMP)

MembraneRestraint (IMP::pmi)

Reflection3D (IMP::algebra)

TIFFImageReaderWriter (IMP::em2d)

C

EventException (IMP)

MembraneRestraint (IMP::pmi1)

RegistrationResult (IMP::em2d)

TiltSingletonScore (IMP::spb)

EventPairsOptimizerState (IMP::container)

MembraneSurfaceLocationConditionalRestraint (IMP.pmi.restraints.npc)

RelativePositionMover (IMP::em2d)

TopologyPlot (IMP.pmi1.plotting.topology)

CAAngleRestraint (IMP::atom)

EventQuadsOptimizerState (IMP::container)

MembraneSurfaceLocationConditionalRestraint (IMP.pmi1.restraints.npc)

RelaxingSpring (IMP::npctransport)

TopologyPlot (IMP.pmi.plotting.topology)

CADihedralRestraint (IMP::atom)

EventSingletonsOptimizerState (IMP::container)

MembraneSurfaceLocationConditionalRestraint (IMP::npc)

RemoteError (IMP.parallel)

TopologyReader (IMP.pmi.topology)

CAlphaPDBSelector (IMP::atom)

EventTripletsOptimizerState (IMP::container)

MembraneSurfaceLocationRestraint (IMP.pmi1.restraints.npc)

RemoveRigidMotionOptimizerState (IMP::atom)

TopologyReader (IMP.pmi1.topology)

CappedAssignmentContainer (IMP::domino)

ExampleComplexRestraint (IMP::example)

MembraneSurfaceLocationRestraint (IMP.pmi.restraints.npc)

RemoveTranslationOptimizerState (IMP::atom)

Torus3D (IMP::algebra)

CBetaPDBSelector (IMP::atom)

ExampleConstraint (IMP::example)

MembraneSurfaceLocationRestraint (IMP::npc)

ReplicaExchange (IMP.pmi.macros)

TotalScoreOutput (IMP.pmi.io)

CCDLoopClosure (IMP::kinematics)

ExampleDecorator (IMP::example)

Memoizer (IMP)

ReplicaExchange (IMP.pmi1.samplers)

TotalScoreOutput (IMP.pmi1.io)

CellMover (IMP::spb)

ExampleObject (IMP::example)

MergeTreeBuilder (IMP::multifit)

ReplicaExchange (IMP.pmi.samplers)

Transform (IMP::core)

CenteredMat (IMP::em2d)

ExamplePairScore (IMP::example)

Metric (IMP::statistics)

ReplicaExchange (IMP::mpi)

Transformation2D (IMP::algebra)

CenterOfMass (IMP::atom)

ExampleRestraint (IMP::example)

MetricClosePairsFinder (IMP::misc)

ReplicaExchange0 (IMP.pmi1.macros)

Transformation3D (IMP::algebra)

Centroid (IMP::core)

ExampleSingletonModifier (IMP::example)

MinimumPairRestraint (IMP::container)

Representation (IMP::atom)

Transformation3DToText (IMP.EMageFit.imp_general.io)

CentroidOfRefined (IMP::core)

ExampleSubsetFilterTable (IMP::example)

MinimumPairScore (IMP::container)

Representation (IMP.pmi1.representation)

TransformationAndReflectionSymmetry (IMP::core)

Chain (IMP::atom)

ExampleTemplateClassD (IMP::example)

MinimumQuadRestraint (IMP::container)

RepulsiveDistancePairScore (IMP::isd)

TransformationJoint (IMP::kinematics)

ChainPDBSelector (IMP::atom)

ExampleUnaryFunction (IMP::example)

MinimumQuadScore (IMP::container)

Residue (IMP::atom)

TransformationSymmetry (IMP::spb)

ChainStatisticsOptimizerState (IMP::npctransport)

Exception (IMP)

MinimumRestraint (IMP::core)

ResidueAlphabet (IMP.pmi.alphabets)

TransformationSymmetry (IMP::core)

ChainType (IMP::atom)

ExcludedVolumeRestraint (IMP::core)

MinimumRestraintScoreSubsetFilterTable (IMP::domino)

ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry)

TransformationSymmetryMover (IMP::core)

Charged (IMP::atom)

ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry)

MinimumSingletonRestraint (IMP::container)

ResidueAngleRestraint (IMP.pmi1.restraints.stereochemistry)

TransformedDistancePairScore (IMP::core)

CHARMMAtom (IMP::atom)

ExcludedVolumeSphere (IMP.pmi1.restraints.stereochemistry)

MinimumSingletonScore (IMP::container)

ResidueBondRestraint (IMP.pmi1.restraints.stereochemistry)

TransformMover (IMP::pmi)

CHARMMAtomTopology (IMP::atom)

ExcludeZRangeSingletonScore (IMP::npctransport)

MinimumSphereDistancePairScore (IMP::npc)

ResidueBondRestraint (IMP.pmi.restraints.stereochemistry)

TransformMover (IMP::pmi1)

CHARMMBondEndpoint (IMP::atom)

ExclusionSubsetFilterTable (IMP::domino)

MinimumTripletRestraint (IMP::container)

ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry)

Transporting (IMP::npctransport)

CHARMMBondParameters (IMP::atom)

ExclusiveConsecutivePairContainer (IMP::container)

MinimumTripletScore (IMP::container)

ResidueDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

Triangle3D (IMP::algebra)

CHARMMConnection (IMP::atom)

ExclusiveConsecutivePairFilter (IMP::container)

MissingFileWarning (IMP.pmi)

ResiduePairListParser (IMP.pmi1.io.crosslink)

TriangleGeometry (IMP::display)

CHARMMDihedralParameters (IMP::atom)

ExtendedGridIndexD (IMP::algebra)

Model (IMP)

ResiduePairListParser (IMP.pmi.io.crosslink)

TripletConstraint (IMP::core)

CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry)

ExternalBarrier (IMP.pmi.restraints.basic)

ModelException (IMP)

ResidueProteinProximityRestraint (IMP.pmi.restraints.basic)

TripletContainer (IMP)

CharmmForceFieldRestraint (IMP.pmi1.restraints.stereochemistry)

ExternalBarrier (IMP.pmi1.restraints.basic)

ModellerRestraints (IMP.modeller)

ResidueProteinProximityRestraint (IMP::isd)

TripletContainerAdaptor (IMP)

CHARMMIdealResidueTopology (IMP::atom)

EzRestraint (IMP::atom)

ModelLoader (IMP.modeller)

ResidueRotamer (IMP::rotamer)

TripletContainerSet (IMP::container)

CHARMMInternalCoordinate (IMP::atom)

F

ModelObject (IMP)

ResidueType (IMP::atom)

TripletContainerStatistics (IMP::container)

CHARMMParameters (IMP::atom)

ModifierVisitor (IMP::core)

ResidueTypePDBSelector (IMP::atom)

TripletModifier (IMP)

CHARMMPatch (IMP::atom)

FFTFitting (IMP::multifit)

Mol2Selector (IMP::atom)

Resolution (IMP::pmi)

TripletPredicate (IMP)

CHARMMResidueTopology (IMP::atom)

FFTFittingOutput (IMP::multifit)

MolCnSymmAxisDetector (IMP::cnmultifit)

Resolution (IMP::pmi1)

TripletRestraint (IMP::core)

CHARMMResidueTopologyBase (IMP::atom)

FGChain (IMP::npctransport)

MolecularDynamics (IMP::atom)

Restraint (IMP)

TripletsConstraint (IMP::container)

CHARMMSegmentTopology (IMP::atom)

FibrilSampler (IMP::kinematics)

MolecularDynamics (IMP.pmi.samplers)

Restraint (IMP::saxs)

TripletScore (IMP)

CHARMMStereochemistryRestraint (IMP::atom)

FilterGeometry (IMP::display)

MolecularDynamics (IMP.pmi1.samplers)

RestraintBase (IMP.pmi1.restraints)

TripletsOptimizerState (IMP::container)

CHARMMTopology (IMP::atom)

FilterOperator (IMP.pmi.io.crosslink)

MolecularDynamics (IMP::isd)

RestraintCache (IMP::domino)

TripletsRestraint (IMP::container)

ChecksScoreState (IMP::core)

FilterOperator (IMP.pmi1.io.crosslink)

MolecularDynamicsMover (IMP::isd)

RestraintGeometry (IMP::display)

TruncatedHarmonic (IMP::core)

ChiFreeScore (IMP::saxs)

FilterProvenance (IMP::core)

MolecularDynamicsWithWte (IMP::spb)

RestraintInfo (IMP)

TwoStateGoModelRestraint (IMP::spb)

ChildrenRefiner (IMP::core)

Fine2DRegistrationRestraint (IMP::em2d)

Molecule (IMP::atom)

RestraintsAdaptor (IMP)

Typed (IMP::core)

ChiScore (IMP::saxs)

FitParameters (IMP::saxs)

Molecule (IMP.pmi.topology)

RestraintScoreSubsetFilterTable (IMP::domino)

TypedPairScore (IMP::core)

ChiScoreLog (IMP::saxs)

FitRestraint (IMP::em)

MonteCarlo (IMP.pmi.samplers)

RestraintSet (IMP)

TypedSitesGeometry (IMP::npctransport)

ChiSquaredScore (IMP::em2d)

FitRestraintBayesEM3D (IMP::em)

MonteCarlo (IMP.pmi1.samplers)

RestraintSetGeometry (IMP::display)

TypeException (IMP)

ChiSquareMetric (IMP::spb)

FittingSolutionRecord (IMP::multifit)

MonteCarlo (IMP::core)

RestraintsScoringFunction (IMP::core)

U

ChiSquareMetric (IMP::statistics)

FittingSolutions (IMP::em)

MonteCarloMover (IMP::core)

ResultsDB (IMP.EMageFit.solutions_io)

CloseBipartitePairContainer (IMP::container)

FittingStates (IMP::multifit)

MonteCarloMoverResult (IMP::core)

RevoluteJoint (IMP::kinematics)

UnaryFunction (IMP)

ClosedCubicSpline (IMP::core)

FixedFormatParser (IMP.pmi.io.crosslink)

MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo)

RevoluteJointMover (IMP::kinematics)

UnaryFunctionEvaluate (IMP::score_functor)

ClosePairContainer (IMP::container)

FixedFormatParser (IMP.pmi1.io.crosslink)

MonteCarloWithBasinHopping (IMP::core)

RigidBodiesImageFitRestraint (IMP::em2d)

UnboundedGridRangeD (IMP::algebra)

ClosePairsFinder (IMP::core)

FixedRefiner (IMP::core)

MonteCarloWithLocalOptimization (IMP::core)

RigidBodiesProfileHandler (IMP::saxs)

Uncertainty (IMP::pmi)

ClosePairsPairScore (IMP::core)

FixedXYZ (IMP::algebra)

MonteCarloWithWte (IMP::spb)

RigidBody (IMP::core)

Uncertainty (IMP::pmi1)

Cluster (IMP.pmi.output)

Flag (IMP)

MoveStatisticsScoreState (IMP::core)

RigidBodyAnglePairScore (IMP::core)

UncheckedWeakPointer (IMP)

Cluster (IMP.pmi1.output)

FloatIndex (IMP)

MRCReaderWriter (IMP::em)

RigidBodyDerivativeGeometry (IMP::core)

Undecorator (IMP)

Clustering (IMP.pmi.analysis)

FNormal (IMP::isd)

MSConnectivityRestraint (IMP::core)

RigidBodyDerivativesGeometry (IMP::core)

UniformBackboneSampler (IMP::kinematics)

Clustering (IMP.pmi1.analysis)

ForceFieldParameters (IMP::atom)

MultipleBinormalRestraint (IMP::core)

RigidBodyDiffusion (IMP::atom)

UniformBoundedRestraint (IMP::spb)

ClusterProvenance (IMP::core)

ForceSwitch (IMP::atom)

MultiStateModel (IMP::multi_state)

RigidBodyDistancePairScore (IMP::core)

UniformPrior (IMP::isd)

ClusterSet (IMP::em2d)

FormFactorTable (IMP::saxs)

MultiStateModelScore (IMP::multi_state)

RigidBodyFrameGeometry (IMP::core)

UnitSimplexBaseD (IMP::algebra)

CnSymmAxisDetector (IMP::cnmultifit)

Fragment (IMP::atom)

MultivariateFNormalSufficient (IMP::isd)

RigidBodyFramesGeometry (IMP::core)

UnitSimplexD (IMP::algebra)

CoarseCCatIntervals (IMP::em)

FreelyJointedChain (IMP::misc)

MyMetric (write_a_metric)

RigidBodyHierarchyGeometry (IMP::core)

UnitSimplexD<-1 > (IMP::algebra)

CoarseConvolution (IMP::em)

FretData (IMP::isd)

N

RigidBodyMember (IMP::core)

UnivariateFunction (IMP::isd)

CoinFlipPairPredicate (IMP::core)

FretRestraint (IMP::isd)

RigidBodyMover (IMP::symmetry)

UnorderedTypePairPredicate (IMP::core)

CoinFlipQuadPredicate (IMP::core)

FStudentT (IMP::isd)

NearestNeighborD (IMP::algebra)

RigidBodyMover (IMP::core)

UnorderedTypeQuadPredicate (IMP::core)

CoinFlipSingletonPredicate (IMP::core)

FunctorLinearInteractionPairScore (IMP::npctransport)

NearestNeighborsClosePairsFinder (IMP::core)

RigidBodyNewMover (IMP::spb)

UnorderedTypeSingletonPredicate (IMP::core)

CoinFlipTripletPredicate (IMP::core)

FunctorLinearSoftSpherePairScore (IMP::npctransport)

NeighborsTable (IMP::core)

RigidBodyPackingScore (IMP::spb)

UnorderedTypeTripletPredicate (IMP::core)

CollisionCrossSection (IMP::em2d)

FusionRestraint (IMP.pmi.restraints.stereochemistry)

NestedRigidBodyStates (IMP::domino)

RigidBodyStates (IMP::domino)

UsageException (IMP)

Color (IMP::display)

FusionRestraint (IMP.pmi1.restraints.stereochemistry)

NetworkError (IMP.parallel)

RigidBodyTorque (IMP::core)

V

ColorChange (IMP.pmi.tools)

FuzzyBoolean (IMP.pmi.restraints.proteomics)

NOERestraint (IMP::isd)

RigidBodyTunneler (IMP::core)

ColorChange (IMP.pmi1.tools)

FuzzyBoolean (IMP.pmi1.restraints.proteomics)

NoMoreWorkersError (IMP.parallel)

RigidBodyUmbrella (IMP::core)

Value (IMP)

Colored (IMP::display)

FuzzyRestraint (IMP.pmi.restraints.proteomics)

NonAlternativePDBSelector (IMP::atom)

RigidClosePairsFinder (IMP::core)

ValueException (IMP)

CombineProvenance (IMP::core)

FuzzyRestraint (IMP.pmi1.restraints.proteomics)

NonCopyable (IMP)

RigidLeavesRefiner (IMP::multifit)

Vector (IMP)

CommandDispatcher (IMP)

G

NonHydrogenMol2Selector (IMP::atom)

RigidMember (IMP::core)

VectorBaseD (IMP::algebra)

CommonEndpointPairFilter (IMP::misc)

NonHydrogenPDBSelector (IMP::atom)

RMFFrame (IMP.mmcif.util)

VectorD (IMP::algebra)

CompareMultiStateModels (IMP::multi_state)

GammaPrior (IMP::isd)

NonRigidMember (IMP::core)

RMFHierarchyHandler (IMP.pmi1.output)

VectorDEmbedding (IMP::statistics)

ComplementarityRestraint (IMP::multifit)

Gaussian (IMP::spb)

NonWaterNonHydrogenPDBSelector (IMP::atom)

RMFHierarchyHandler (IMP.pmi.output)

VectorKDMetric (IMP::algebra)

CompleteLinkage (IMP::em2d)

Gaussian (IMP::core)

NonWaterPDBSelector (IMP::atom)

RMSD (IMP.pmi1.analysis)

VelocityScalingOptimizerState (IMP::atom)

ComponentHeader (IMP::multifit)

Gaussian3D (IMP::algebra)

NormalizedSphereDistancePairScore (IMP::core)

RMSD (IMP.pmi.analysis)

VersionInfo (IMP)

CompositeJoint (IMP::kinematics)

GaussianAnchorEMRestraint (IMP::isd)

NormalMover (IMP::core)

RMSDMetric (IMP::spb)

VolumeRestraint (IMP::core)

CompositeRestraint (IMP.pmi.restraints.proteomics)

GaussianEMRestraint (IMP::bayesianem)

NormalSigmaPCRestraint (IMP::isd)

RMSDOutput (IMP.pmi1.io)

Voxel (IMP::em)

CompositeRestraint (IMP.pmi1.restraints.proteomics)

GaussianEMRestraint (IMP.pmi.restraints.em)

NotPDBSelector (IMP::atom)

RotamerAngleTuple (IMP::rotamer)

W

CompositeRestraint (IMP::npc)

GaussianEMRestraint (IMP.pmi1.restraints.em)

NPDBSelector (IMP::atom)

RotamerCalculator (IMP::rotamer)

CompositeRestraint (IMP::pmi)

GaussianEMRestraint (IMP::isd)

Nuisance (IMP::isd)

RotamerLibrary (IMP::rotamer)

WarningContext (IMP)

CompositeRestraint (IMP::pmi1)

GaussianEMRestraintWrapper (IMP.bayesianem.restraint)

NuisanceRangeModifier (IMP::spb)

Rotation2D (IMP::algebra)

WaterPDBSelector (IMP::atom)

CompoundStates (IMP::domino)

GaussianProcessInterpolation (IMP::isd)

O

Rotation3D (IMP::algebra)

WeakPointer (IMP)

Cone3D (IMP::algebra)

GaussianProcessInterpolationRestraint (IMP::isd)

RRT (IMP::kinematics)

Weight (IMP::isd)

Configuration (IMP)

GaussianRestraint (IMP::isd)

Object (IMP)

RRT::RRTNode (IMP::kinematics)

WeightedDerivativesToRefined (IMP::core)

ConfigurationSet (IMP)

GeneralizedGuinierPorodFunction (IMP::isd)

OneDimensionalDistribution (IMP::isd)

S

WeightedExcludedVolumeRestraint (IMP::multifit)

ConfigurationSetRMSDMetric (IMP::statistics)

GenericAttributeSingletonScore (IMP::core)

OneDimensionalSufficientDistribution (IMP::isd)

WeightedFitParameters (IMP::saxs)

ConfigurationSetXYZEmbedding (IMP::statistics)

GenericBoundingBox3DSingletonScore (IMP::core)

OpenCubicSpline (IMP::score_functor)

SameParticlePairFilter (IMP::spb)

WeightedProfileFitter (IMP::saxs)

ConjugateGradients (IMP.pmi.samplers)

GenericBoundingSphere3DSingletonScore (IMP::core)

OpenCubicSpline (IMP::core)

SameResiduePairFilter (IMP::atom)

WeightedSphereDistancePairScore (IMP::core)

ConjugateGradients (IMP.pmi1.samplers)

GenericDistanceToSingletonScore (IMP::core)

Optimizer (IMP)

SameRigidBodyPairFilter (IMP::spb)

WeightedSum (IMP::core)

ConjugateGradients (IMP::gsl)

GeometricHash (IMP::multifit)

OptimizerState (IMP)

SampleAssignmentContainer (IMP::domino)

WeightedSumOfExponential (IMP::core)

ConjugateGradients (IMP::core)

GeometricPrimitiveD (IMP::algebra)

Order (IMP::domino)

SampledDensityMap (IMP::em)

WeightMover (IMP::isd)

ConnectingPairContainer (IMP::container)

Geometry (IMP::display)

OrderedDefaultDict (IMP.pmi.tools)

SampleProvenance (IMP::core)

WeightRestraint (IMP.pmi.restraints.parameters)

ConnectivityCrossLinkMS (IMP.pmi1.restraints.crosslinking)

GeometryProcessor (IMP::display)

OrderedDefaultDict (IMP.pmi1.tools)

Sampler (IMP)

WeightRestraint (IMP.pmi1.restraints.parameters)

ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

GeometrySet (IMP::display)

OrderedTypePairPredicate (IMP::core)

SaveLink (IMP::rmf)

WeightRestraint (IMP::isd)

ConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

GetModelDensity (IMP.pmi.analysis)

OrderedTypeQuadPredicate (IMP::core)

SaveOptimizerState (IMP::rmf)

WeightScore (IMP::score_functor)

ConnectivityRestraint (IMP.pmi.restraints.proteomics)

GetModelDensity (IMP.pmi1.analysis)

OrderedTypeSingletonPredicate (IMP::core)

SaveToConfigurationSetOptimizerState (IMP)

Worker (IMP.parallel)

ConnectivityRestraint (IMP.pmi.restraints.stereochemistry)

GetModelDensity (IMP.sampcon.precision_rmsd)

OrderedTypeTripletPredicate (IMP::core)

SAXSISDRestraint (IMP.pmi.restraints.saxs)

WorkerArray (IMP.parallel)

ConnectivityRestraint (IMP.pmi1.restraints.proteomics)

GlobalStatisticsOptimizerState (IMP::npctransport)

OrientedSoap (IMP::score_functor)

SAXSISDRestraint (IMP.pmi1.restraints.saxs)

WormLikeChain (IMP::misc)

ConnectivityRestraint (IMP.pmi1.restraints.stereochemistry)

GMMParser (IMP.pmi.mmcif)

OrientedSoapPairScore (IMP::atom)

SAXSMultiCombinationScore (IMP::multi_state)

WriteAssignmentContainer (IMP::domino)

ConnectivityRestraint (IMP::core)

GoodScoringModelSelector (IMP.sampcon.good_scoring_model_selector)

OrPDBSelector (IMP::atom)

SAXSMultiStateModelScore (IMP::multi_state)

WriteHDF5AssignmentContainer (IMP::domino)

ConnollySurfacePoint (IMP::algebra)

GridClosePairsFinder (IMP::core)

Output (IMP.pmi.output)

SAXSRestraint (IMP.pmi.restraints.saxs)

WriteOptimizerState (IMP::display)

ConsecutivePairContainer (IMP::container)

GridD (IMP::algebra)

Output (IMP.pmi1.output)

SAXSRestraint (IMP.pmi1.restraints.saxs)

WritePDBOptimizerState (IMP::atom)

ConsecutivePairFilter (IMP::container)

GridIndexD (IMP::algebra)

OutputStatistics (IMP.pmi.output)

Scale (IMP::isd)

Writer (IMP::display)

ConstantPairPredicate (IMP::core)

GridStates (IMP::em2d)

OutputStatistics (IMP.pmi1.output)

ScopedAddCacheAttribute (IMP)

WriterAdaptor (IMP::display)

ConstantQuadPredicate (IMP::core)

GSLOptimizer (IMP::gsl)

P

ScopedSetAttribute (IMP)

WriteRestraintScoresOptimizerState (IMP::core)

ConstantRestraint (IMP::core)

H

Score (IMP::score_functor)

X

ConstantSingletonPredicate (IMP::core)

PackedAssignmentContainer (IMP::domino)

ScoreAccumulator (IMP)

ConstantTripletPredicate (IMP::core)

Harmonic (IMP::score_functor)

PairConstraint (IMP::core)

ScoreFunction (IMP::em2d)

Xlink (IMP.EMageFit.buildxlinks)

Constraint (IMP)

Harmonic (IMP::core)

PairContainer (IMP)

ScoreState (IMP)

XlinksDict (IMP.EMageFit.buildxlinks)

ConstVector (IMP)

HarmonicDistancePairScore (IMP::core)

PairContainerAdaptor (IMP)

ScoreUnaryFunction (IMP::score_functor)

XLTable (IMP.pmi1.io.xltable)

ContactMapMetric (IMP::spb)

HarmonicLowerBound (IMP::score_functor)

PairContainerSet (IMP::container)

ScoreWithCache (IMP::score_functor)

XorPDBSelector (IMP::atom)

Container (IMP)

HarmonicLowerBound (IMP::core)

PairContainerStatistics (IMP::container)

Scoring (IMP::npctransport)

XplorReaderWriter (IMP::em)

Context (IMP.parallel)

HarmonicSphereDistancePairScore (IMP::core)

PairGeometry (IMP::display)

ScoringFunction (IMP)

XYRadialPositionLowerRestraint (IMP::npc)

Copy (IMP::atom)

HarmonicSpringSingletonScore (IMP::npctransport)

PairListSubsetFilterTable (IMP::domino)

ScoringFunctionAdaptor (IMP)

XYRadialPositionLowerRestraint (IMP.pmi1.restraints.npc)

Cosine (IMP::core)

HarmonicSurfaceDepthPairScore (IMP::core)

PairModifier (IMP)

ScriptProvenance (IMP::core)

XYRadialPositionLowerRestraint (IMP.pmi.restraints.npc)

CoulombPairScore (IMP::atom)

HarmonicSurfaceDistancePairScore (IMP::core)

PairPredicate (IMP)

SecondaryStructure (IMP.pmi1.restraints.stereochemistry)

XYRadialPositionRestraint (IMP::npc)

Covariance1DFunction (IMP::isd)

HarmonicSurfaceHeightPairScore (IMP::core)

PairRestraint (IMP::core)

SecondaryStructureResidue (IMP::atom)

XYRadialPositionRestraint (IMP.pmi1.restraints.npc)

Cover (IMP::core)

HarmonicUpperBound (IMP::score_functor)

PairsConstraint (IMP::container)

Segment3D (IMP::algebra)

XYRadialPositionRestraint (IMP.pmi.restraints.npc)

CoverBond (IMP::atom)

HarmonicUpperBound (IMP::core)

PairScore (IMP)

SegmentationParameters (IMP::em2d)

XYRadialPositionUpperRestraint (IMP::npc)

CoverRefined (IMP::core)

HarmonicUpperBoundSphereDiameterPairScore (IMP::core)

PairsGeometry (IMP::display)

SegmentGeometry (IMP::display)

XYRadialPositionUpperRestraint (IMP.pmi.restraints.npc)

CPDBSelector (IMP::atom)

HarmonicUpperBoundSphereDistancePairScore (IMP::core)

PairsOptimizerState (IMP::container)

Segments (IMP.pmi1.tools)

XYRadialPositionUpperRestraint (IMP.pmi1.restraints.npc)

CreateLogContext (IMP)

HarmonicWell (IMP::core)

PairsRestraint (IMP::container)

Segments (IMP.pmi.tools)

XYZ (IMP::core)

CrossCorrelationRestraint (IMP.pmi1.restraints.em)

HarmonicWellPairScore (IMP::npctransport)

ParabolicFit2D (IMP::algebra)

Selection (IMP::atom)

XYZDerivativeGeometry (IMP::core)

CrossLinkData (IMP::isd)

HasHigherCCC (IMP::em2d)

ParameterWarning (IMP.pmi)

SelectionGeometry (IMP::atom)

XYZDerivativesGeometry (IMP::core)

CrossLinkDataBase (IMP.pmi.io.crosslink)

HasLowerScore (IMP::em2d)

Particle (IMP)

Sequences (IMP.pmi.topology)

XYZR (IMP::core)

CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink)

HeapAssignmentContainer (IMP::domino)

ParticleAdaptor (IMP)

Sequences (IMP.pmi1.topology)

XYZRGeometry (IMP::core)

CrossLinkDataBaseFromStructure (IMP.pmi1.io.crosslink)

HeapRecord (IMP.EMageFit.solutions_io)

ParticleEmbedding (IMP::statistics)

SerialMover (IMP::core)

XYZRsGeometry (IMP::core)

CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink)

HelixDecorator (IMP::spb)

ParticleFactory (IMP::npctransport)

SetCheckState (IMP)

XYZStates (IMP::domino)

CrossLinkDataBaseKeywordsConverter (IMP.pmi1.io.crosslink)

HelixRestraint (IMP.pmi.restraints.stereochemistry)

ParticleIndexAdaptor (IMP)

SetLogState (IMP)

Y

CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking)

HelixRestraint (IMP.pmi1.restraints.stereochemistry)

ParticleIndexesAdaptor (IMP)

SetLogTarget (IMP)

CrossLinkingMassSpectrometryRestraint (IMP.pmi1.restraints.crosslinking)

HelixRestraint (IMP::atom)

ParticleIndexPairsAdaptor (IMP)

SetNumberOfThreads (IMP)

YAxialPositionLowerRestraint (IMP.pmi.restraints.npc)

CrossLinkMS (IMP.pmi1.nonmantained)

HierarchiesGeometry (IMP::atom)

ParticleInputs (IMP)

SettingsData (IMP::multifit)

YAxialPositionLowerRestraint (IMP.pmi1.restraints.npc)

CrossLinkMSRestraint (IMP::isd)

Hierarchy (IMP::core)

ParticleOutputs (IMP)

SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics)

YAxialPositionLowerRestraint (IMP::npc)

CrossLinkTable (IMP.pmi.analysis)

Hierarchy (IMP::atom)

ParticlesAdaptor (IMP::domino)

SetupConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics)

YAxialPositionRestraint (IMP.pmi1.restraints.npc)

CrossLinkTable (IMP.pmi1.analysis)

HierarchyCounter (IMP::core)

ParticlesDummyRestraint (IMP::em2d)

SetupMembraneRestraint (IMP.pmi1.restraints.proteomics)

YAxialPositionRestraint (IMP.pmi.restraints.npc)

CustomXYZR (IMP::misc)

HierarchyDatabase (IMP.pmi1.tools)

ParticleStates (IMP::domino)

SGEPEWorkerArray (IMP.parallel)

YAxialPositionRestraint (IMP::npc)

CvEstimator (IMP.isd.TuneRex)

HierarchyGeometry (IMP::atom)

ParticleStatesTable (IMP::domino)

SGEQsubWorkerArray (IMP.parallel)

YAxialPositionUpperRestraint (IMP.pmi1.restraints.npc)

Cylinder3D (IMP::algebra)

HierarchyLoadLink (IMP::rmf)

ParticleTransportStatisticsOptimizerState (IMP::npctransport)

Shift (IMP::score_functor)

YAxialPositionUpperRestraint (IMP.pmi.restraints.npc)

CylinderGeometry (IMP::display)

HierarchySaveLink (IMP::rmf)

PartitionalClustering (IMP::statistics)

Showable (IMP)

YAxialPositionUpperRestraint (IMP::npc)

CylinderRestraint (IMP.pmi.restraints.basic)

HierarchyTraits (IMP::core)

PartitionalClusteringWithCenter (IMP::statistics)

SigmoidRestraintSphere (IMP::pmi1)

Z

CylinderRestraint (IMP.pmi1.restraints.basic)

HierarchyVisitor (IMP::core)

PathLocalPlanner (IMP::kinematics)

SimpleAssignmentsTable (IMP::domino)

CysteineCrossLinkData (IMP::isd)

HierarchyWithSitesLoadLink (IMP::npctransport)

PbcBoxedMover (IMP::spb)

SimpleLoadLink (IMP::rmf)

ZAxialPositionLowerRestraint (IMP.pmi.restraints.npc)

CysteineCrossLinkRestraint (IMP::isd)

HierarchyWithSitesSaveLink (IMP::npctransport)

PbcBoxedRigidBodyMover (IMP::spb)

SimpleSaveLink (IMP::rmf)

ZAxialPositionLowerRestraint (IMP.pmi1.restraints.npc)

D

HighDensityEmbedding (IMP::em)

PCAAligner (IMP::em)

Simplex (IMP::gsl)

ZAxialPositionLowerRestraint (IMP::npc)

HistogramD (IMP::statistics)

PCAFitRestraint (IMP::em)

SimulationData (IMP::npctransport)

ZAxialPositionRestraint (IMP.pmi.restraints.npc)

Database2 (IMP.EMageFit.database)

History (IMP.isd.History)

PCAFitRestraint (IMP::em2d)

Simulator (IMP::atom)

ZAxialPositionRestraint (IMP.pmi1.restraints.npc)

DataEntry (IMP.pmi.output)

HybridMonteCarlo (IMP::isd)

PDBSelector (IMP::atom)

SingleLinkage (IMP::em2d)

ZAxialPositionRestraint (IMP::npc)

DataEntry (IMP.pmi1.output)

HydrogenPDBSelector (IMP::atom)

PDBSequences (IMP.pmi.topology)

SingletonConstraint (IMP::core)

ZAxialPositionUpperRestraint (IMP::npc)

DataObject (IMP::core)

I

PenalizedComplexityPrior (IMP::isd)

SingletonContainer (IMP)

ZAxialPositionUpperRestraint (IMP.pmi.restraints.npc)

DataPointsAssignment (IMP::multifit)

PerinuclearVolumeLocationRestraint (IMP::npc)

SingletonContainerAdaptor (IMP)

ZAxialPositionUpperRestraint (IMP.pmi1.restraints.npc)

DecayPairContainerOptimizerState (IMP::misc)

Image (IMP::em2d)

PermutationStates (IMP::domino)

SingletonContainerSet (IMP::container)

ZBiasSingletonScore (IMP::npctransport)

Decorator (IMP)

ImageHeader (IMP::em)

Pipe (IMP.isd.utils)

SingletonContainerStatistics (IMP::container)

s

DefaultEmbeddingD (IMP::algebra)

ImageReaderWriter (IMP::em2d)

PivyWriter (IMP::display)

SingletonGeometry (IMP::display)

DegreesOfFreedom (IMP.pmi.dof)

IMPRestraints (IMP.modeller)

Plane3D (IMP::algebra)

SingletonModifier (IMP)

sfo_common (IMP.isd.shared_functions)

DeltaDistributionFunction (IMP::saxs)

ImproperSingletonScore (IMP::atom)

PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry)

SingletonPredicate (IMP)

v

Demuxer (IMP.isd.demux_trajs)

InBoundingBox3DSingletonPredicate (IMP::core)

PlaneDihedralRestraint (IMP.pmi1.restraints.stereochemistry)

SingletonRestraint (IMP::core)

DenseFloatLogGridKD (IMP::algebra)

InContainerPairFilter (IMP::container)

PlaneGeometry (IMP::display)

SingletonsConstraint (IMP::container)

vonMises (IMP::isd)

DenseGrid3D (IMP::algebra)

InContainerQuadFilter (IMP::container)

PMIMoleculeHierarchy (IMP.pmi1.topology)

SingletonScore (IMP)

vonMisesKappaConjugateRestraint (IMP::isd)

DenseGridStorageD (IMP::algebra)

InContainerSingletonFilter (IMP::container)

PMIMoleculeHierarchy (IMP.pmi.topology)

SingletonsGeometry (IMP::display)

vonMisesKappaJeffreysRestraint (IMP::isd)

DenseIntLogGrid3D (IMP::algebra)

InContainerTripletFilter (IMP::container)

Pointer (IMP)

SingletonsOptimizerState (IMP::container)

vonMisesSufficient (IMP::isd)

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z