Detailed Description

Score atoms based on the Fiser/Melo loop modeling statistical potential.

See Fiser et al, Modeling of loops in protein structures. Protein Science 9, 1753-1773, 2000.

Like DOPE, this potential should not be applied to two atoms from the same residue. You may need to use the SameResiduePairFilter to filter these out.

You need to use IMP::atom::add_loop_statistical_score_data() to add the requisite type data to the particles being scored.

Definition at line 37 of file LoopStatistical.h.

Public Member Functions
	LoopStatistical (double threshold=std::numeric_limits< double >::max())

	LoopStatistical (double threshold, TextInput data_file)

Public Member Functions inherited from IMP::score_functor::Statistical< LoopStatisticalType, false, true >
	Statistical (IntKey k, double threshold, TextInput data_file)

	Statistical (IntKey k, double threshold, TextInput data_file, unsigned int shift)

bool	get_is_trivially_zero (Model *m, const ParticleIndexPair &p, double squared_distance) const

double	get_maximum_range (Model *, const ParticleIndexPair &) const

double	get_score (Model *m, const ParticleIndexPair &pp, double distance) const

DerivativePair	get_score_and_derivative (Model *m, const Array< 2, ParticleIndex > &pp, double distance) const

Public Member Functions inherited from IMP::score_functor::Score
ModelObjectsTemp	get_inputs (Model *m, const ParticleIndexes &pis) const

template<unsigned int D>
bool	get_is_trivially_zero (Model *m, const Array< D, ParticleIndex > &p, double squared_distance) const

template<unsigned int D>
double	get_maximum_range (Model *m, const Array< D, ParticleIndex > &p) const

template<unsigned int D>
double	get_score (Model *m, const Array< D, ParticleIndex > &p, double distance) const
	Return the score at the passed feature size (eg distance). More...

template<unsigned int D>
DerivativePair	get_score_and_derivative (Model *m, const Array< D, ParticleIndex > &p, double distance) const
	Return the score and derivative at the passed feature size (eg distance). More...

void	show (std::ostream &) const

Static Public Member Functions
static IntKey	get_loop_type_key ()

The documentation for this class was generated from the following file:

LoopStatistical.h

Detailed Description

Public Member Functions

Static Public Member Functions