Transformation3D.h

Go to the documentation of this file.

/**
 *  \file IMP/algebra/Transformation3D.h
 *  \brief Simple 3D transformation class.
 *
 *  Copyright 2007-2022 IMP Inventors. All rights reserved.
 *
 */

#ifndef IMPALGEBRA_TRANSFORMATION_3D_H
#define IMPALGEBRA_TRANSFORMATION_3D_H

#include <IMP/algebra/algebra_config.h>
#include "Vector3D.h"
#include "Line3D.h"
#include "Rotation3D.h"
#include "BoundingBoxD.h"
#include "GeometricPrimitiveD.h"
#include <boost/serialization/access.hpp>

IMPALGEBRA_BEGIN_NAMESPACE

#if !defined(IMP_DOXYGEN) && !defined(SWIG)
class Transformation3D;
Transformation3D compose(const Transformation3D &a, const Transformation3D &b);
#endif

typedef std::pair<Vector4D, Vector3D> Transformation3DAdjoint;
typedef std::pair<Vector3D, Transformation3DAdjoint> TransformedVector3DAdjoint;
typedef std::pair<Transformation3DAdjoint, Transformation3DAdjoint>
    ComposeTransformation3DAdjoint;

//! Simple 3D transformation class
/** The rotation is applied first, and then the point is translated.
    \see IMP::core::Transform
    \geometry
*/
class IMPALGEBRAEXPORT Transformation3D : public GeometricPrimitiveD<3> {
 public:
  IMP_CXX11_DEFAULT_COPY_CONSTRUCTOR(Transformation3D);
  //! Default construct (makes an invalid transformation)
  Transformation3D() {}
  //! Basic constructor
  Transformation3D(const Rotation3D &r, const Vector3D &t = Vector3D(0, 0, 0))
      : trans_(t), rot_(r) {}
  //! Construct a transformation with an identity rotation.
  Transformation3D(const Vector3D &t)
      : trans_(t), rot_(get_identity_rotation_3d()) {}
  ~Transformation3D();
  //! Transform
  Vector3D get_transformed(const Vector3D &o) const {
    return rot_.get_rotated(o) + trans_;
  }

#ifndef SWIG
  //! Get adjoint of inputs to `get_transformed` from adjoint of output
  /** Compute the adjoint (reverse-mode sensitivity) of input vector
      to `get_transformed` and this transformation from the adjoint of the
      output vector.
   */
  void get_transformed_adjoint(const Vector3D &v, const Vector3D &Dw,
                               Vector3D *Dv, Transformation3DAdjoint *DT) const;
#endif

  //! Get adjoint of inputs to `get_transformed` from adjoint of output
  /** Compute the adjoint (reverse-mode sensitivity) of input vector
      to `get_transformed` and this transformation from the adjoint of the
      output vector.
   */
  TransformedVector3DAdjoint
  get_transformed_adjoint(const Vector3D &v, const Vector3D &Dw) const;

  //! Apply transformation (rotate and then translate)
  Vector3D operator*(const Vector3D &v) const { return get_transformed(v); }
  /** Compose two rigid transformation such that for any vector v
      (rt1*rt2)*v = rt1*(rt2*v) */
  Transformation3D operator*(const Transformation3D &tr) const {
    return compose(*this, tr);
  }
  const Transformation3D &operator*=(const Transformation3D &o) {
    *this = compose(*this, o);
    return *this;
  }
  //! Compute the transformation which, when composed with b, gives *this.
  /** That is a(x)== d(b(x)) for all x.

      For consistency, this should probably have a nice name, but
      I don't know what name to give it.
   */
  Transformation3D operator/(const Transformation3D &b) const {
    Transformation3D ret = compose(*this, b.get_inverse());
    return ret;
  }
  const Transformation3D &operator/=(const Transformation3D &o) {
    *this = *this / o;
    return *this;
  }

  //! Return the rotation associated with this transformation
  const Rotation3D &get_rotation() const { return rot_; }

  //! Return the translation vector associated with this transformation
  const Vector3D &get_translation() const { return trans_; }

  IMP_SHOWABLE_INLINE(Transformation3D, {
    rot_.show(out);
    out << " || " << trans_;
  });
  Transformation3D get_inverse() const;

  /** @return true if the 3D transformation is valid; false if the
        transformation was initialized only with the empty constructor,
        or it was initialized with an invalid rotation.
  */
  bool get_is_valid() const {
    return rot_.get_is_valid();
  }

private:
  Vector3D trans_;  // translation
  Rotation3D rot_;  // rotation

  friend class boost::serialization::access;

  template<class Archive> void serialize(Archive &ar, const unsigned int) {
    ar & trans_ & rot_;
  }

};

IMP_VALUES(Transformation3D, Transformation3Ds);

//! Return a transformation that does not do anything
/** \see Transformation3D */
inline Transformation3D get_identity_transformation_3d() {
  return Transformation3D(get_identity_rotation_3d(), Vector3D(0.0, 0.0, 0.0));
}

//! Generate a Transformation3D object from a rotation around a point
/** Rotate about a point rather than the origin.
  \param[in] point Center to rotate about
  \param[in] rotation The rotation to perform

  \see Transformation3D
*/
inline Transformation3D get_rotation_about_point(const Vector3D &point,
                                                 const Rotation3D &rotation) {
  return Transformation3D(rotation, (rotation * (-point) + point));
}

//! Compose two transformations
/** For any vector v (a*b)*v = a*(b*v).
    \see Transformation3D
 */
inline Transformation3D compose(const Transformation3D &a,
                                const Transformation3D &b) {
  IMP_USAGE_CHECK(a.get_is_valid() && b.get_is_valid(),
                  "composing an invalid transformation");
  return Transformation3D(compose(a.get_rotation(), b.get_rotation()),
                          a.get_transformed(b.get_translation()));
}

#ifndef SWIG
//! Get adjoint of inputs to `compose` from adjoint of output
/** Compute the adjoint (reverse-mode sensitivity) of input transformations
    to `compose` from the adjoint of the output transformation.
 */
IMPALGEBRAEXPORT void
compose_adjoint(const Transformation3D &TA, const Transformation3D &TB,
                const Transformation3DAdjoint &DTC,
                Transformation3DAdjoint *DTA, Transformation3DAdjoint *DTB);
#endif

//! Get adjoint of inputs to `compose` from adjoint of output
/** Compute the adjoint (reverse-mode sensitivity) of input transformations
    to `compose` from the adjoint of the output transformation.
 */
IMPALGEBRAEXPORT ComposeTransformation3DAdjoint
compose_adjoint(const Transformation3D &TA, const Transformation3D &TB,
                const Transformation3DAdjoint &DTC);

class Transformation2D;

//! Build a 3D transformation from a 2D one.
/**
  \note The 3D transformation is built with the 2D rotation becoming a rotation
  around the z axis.
  **/
IMPALGEBRAEXPORT Transformation3D
    get_transformation_3d(const Transformation2D &t2d);

//! Get a local transformation
/**
  \note randomly select an axis that passes through the input point
  and rotate around it
  \param[in] origin the origin of the rotation
  \param[in] max_translation default value is 5
  \param[in] max_angle_in_rad default value is 15 degree in radians
  **/
IMPALGEBRAEXPORT Transformation3D
    get_random_local_transformation(Vector3D origin,
                                    double max_translation = 5.,
                                    double max_angle_in_rad = 0.26);

//! Return a bounding box containing the transformed box
inline BoundingBoxD<3> get_transformed(const BoundingBoxD<3> &bb,
                                       const Transformation3D &tr) {
  BoundingBoxD<3> nbb;
  for (unsigned int i = 0; i < 2; ++i) {
    for (unsigned int j = 0; j < 2; ++j) {
      for (unsigned int k = 0; k < 2; ++k) {
        algebra::Vector3D v(bb.get_corner(i)[0], bb.get_corner(j)[1],
                            bb.get_corner(k)[2]);
        nbb += tr.get_transformed(v);
      }
    }
  }
  return nbb;
}

inline algebra::Line3D get_transformed(const algebra::Line3D &l,
                                       const Transformation3D &tr) {
  return Line3D(tr.get_rotation().get_rotated(l.get_direction()),
                tr.get_transformed(l.get_point_on_line()));
}

IMPALGEBRA_END_NAMESPACE

#endif /* IMPALGEBRA_TRANSFORMATION_3D_H */