|
| DegreesOfFreedom (IMP.pmi.dof) | InContainerPairFilter (IMP::container) | PlaneDihedralRestraint (IMP.pmi.restraints.stereochemistry) | SingletonContainerStatistics (IMP::container) |
| DeltaDistributionFunction (IMP::saxs) | InContainerQuadFilter (IMP::container) | PlaneGeometry (IMP::display) | SingletonGeometry (IMP::display) |
| AddBoolFlag (IMP) | Demuxer (IMP.isd.demux_trajs) | InContainerSingletonFilter (IMP::container) | PMIMoleculeHierarchy (IMP.pmi.topology) | SingletonModifier (IMP) |
| AddFloatFlag (IMP) | DenseFloatLogGridKD (IMP::algebra) | InContainerTripletFilter (IMP::container) | PMIMoleculeHierarchy (IMP.pmi1.topology) | SingletonPredicate (IMP) |
| AddIntFlag (IMP) | DenseGrid3D (IMP::algebra) | IncrementalScoringFunction (IMP::core) | Pointer (IMP) | SingletonRestraint (IMP::core) |
| AddScores (IMP::score_functor) | DenseGridStorageD (IMP::algebra) | Index (IMP) | PointerMember (IMP) | SingletonsConstraint (IMP::container) |
| AddStringFlag (IMP) | DenseIntLogGrid3D (IMP::algebra) | IndexException (IMP) | PointGeometry (IMP::display) | SingletonScore (IMP) |
| AdvancedFlag (IMP) | DensityDataPoints (IMP::multifit) | IndexStates (IMP::domino) | PointToSphereDistance (IMP::score_functor) | SingletonsGeometry (IMP::display) |
| Alignment (IMP.pmi.analysis) | DensityFillingRestraint (IMP::em) | IndexVector (IMP) | PolarResamplingParameters (IMP::em2d) | SingletonsOptimizerState (IMP::container) |
| Alignment (IMP.pmi1.analysis) | DensityHeader (IMP::em) | InitialDockingFromXlinks (IMP.EMageFit.buildxlinks) | PolygonGeometry (IMP::display) | SingletonsRestraint (IMP::container) |
| AlignmentClustering (IMP.multifit.cluster) | DensityMap (IMP::em) | InputAdaptor (IMP) | PoreRadiusSingletonScore (IMP::npctransport) | SingletonStatistical (IMP::score_functor) |
| AlignSymmetric (IMP::cnmultifit) | DependencyScoreState (IMP::domino) | InternalCoordinatesConstraint (IMP::pmi) | PoreSideVolumeLocationRestraint (IMP::npc) | SitesGeometry (IMP::npctransport) |
| AllBipartitePairContainer (IMP::container) | DerivativeAccumulator (IMP) | InternalCoordinatesConstraint (IMP::pmi1) | PPDBSelector (IMP::atom) | SitesPairScore (IMP::npctransport) |
| AllMol2Selector (IMP::atom) | DerivativeCalculator (IMP::saxs) | InternalException (IMP) | Precision (IMP.pmi1.analysis) | SitesPairScoreParameters (IMP::npctransport) |
| AllPairContainer (IMP::container) | DerivativesFromRefined (IMP::core) | IntsOrder (IMP::em2d) | Precision (IMP.pmi.analysis) | SkinSurfaceGeometry (IMP::display) |
| AllPDBSelector (IMP::atom) | DerivativesToRefined (IMP::core) | IOException (IMP) | PredicatePairsRestraint (IMP::container) | SlabWithCylindricalPore (IMP::npctransport) |
| AllSamePairPredicate (IMP::core) | DiameterRestraint (IMP::core) | IsCollisionPairPredicate (IMP::core) | PredicateQuadsRestraint (IMP::container) | SlabWithCylindricalPorePairScore (IMP::npctransport) |
| AllSameQuadPredicate (IMP::core) | DiameterRgyrRestraint (IMP::spb) | ISDRestraint (IMP::spb) | PredicateSingletonScore (IMP::core) | SlabWithCylindricalPoreWireGeometry (IMP::npctransport) |
| AllSameSingletonPredicate (IMP::core) | Diffusion (IMP::atom) | ISDRestraint (IMP::isd) | PredicateSingletonsRestraint (IMP::container) | SlabWithPore (IMP::npctransport) |
| AllSameTripletPredicate (IMP::core) | Dihedral (IMP::atom) | IsosurfaceGeometry (IMP::display) | PredicateTripletsRestraint (IMP::container) | SlabWithToroidalPore (IMP::npctransport) |
| AmbiguousCompositeRestraint (IMP.pmi.restraints.proteomics) | DihedralAngleRevoluteJoint (IMP::kinematics) |
| PrincipalComponentAnalysisD (IMP::algebra) | SlabWithToroidalPorePairScore (IMP::npctransport) |
| AmbiguousCompositeRestraint (IMP.pmi1.restraints.proteomics) | DihedralRestraint (IMP::core) | PrismaticJoint (IMP::kinematics) | SlabWithToroidalPoreWireGeometry (IMP::npctransport) |
| AmbiguousNOERestraint (IMP::isd) | DihedralSingletonScore (IMP::atom) | JaccardDistanceMatrix (IMP.pmi.io.crosslink) | ProbabilisticAnchorGraph (IMP::multifit) | Slave (IMP.parallel) |
| AmbiguousRestraint (IMP::isd) | Direction (IMP::core) | JaccardDistanceMatrix (IMP.pmi1.io.crosslink) | ProbabilisticSubsetFilterTable (IMP::domino) | SlaveArray (IMP.parallel) |
| Analysis (IMP.isd.Analysis) | DirectionalDOF (IMP::kinematics) | JeffreysPrior (IMP.pmi.restraints.parameters) | ProcessOutput (IMP.pmi.output) | Slice (IMP::domino) |
| AnalysisReplicaExchange (IMP.pmi.macros) | DirectionAngle (IMP::core) | JeffreysPrior (IMP.pmi1.restraints.parameters) | ProcessOutput (IMP.pmi1.output) | SmoothingFunction (IMP::atom) |
| AnalysisReplicaExchange (IMP.pmi1.macros) | DirectionMover (IMP::core) | JeffreysRestraint (IMP::isd) | Profile (IMP::saxs) | Soap (IMP::score_functor) |
| AnalysisReplicaExchange0 (IMP.pmi.macros) | DirectorObjectChecker (IMP.test) | Joint (IMP::kinematics) | ProfileClustering (IMP::saxs) | SoapPairFilter (IMP::atom) |
| AnalysisReplicaExchange0 (IMP.pmi1.macros) | DiscreteSampler (IMP::domino) | JPGImageReaderWriter (IMP::em2d) | ProfileFitter (IMP::saxs) | SoftCylinderPairScore (IMP::misc) |
| AnchorsData (IMP::multifit) | DisjointSetsSubsetFilterTable (IMP::domino) |
| Profiler (IMP::benchmark) | SoftSpherePairScore (IMP::core) |
| AnchorToCylidnricalPorePairScore (IMP::npctransport) | DistanceFilter (IMP::em2d) | ProjectingOptions (IMP::em2d) | SoftSubSurfacePairScore (IMP::core) |
| AndPDBSelector (IMP::atom) | DistanceFilterTable (IMP::em2d) | KClosePairsPairScore (IMP::core) | ProjectingParameters (IMP::em2d) | SoftSuperSurfacePairScore (IMP::core) |
| Angle (IMP::atom) | DistanceMask (IMP::em) | KernelParameters (IMP::em) | ProjectionFinder (IMP::em2d) | SoftwareProvenance (IMP::core) |
| AngleRestraint (IMP::core) | DistancePairScore (IMP::score_functor) | Key (IMP) | ProjectionMask (IMP::em2d) | SolventAccessibleSurface (IMP::saxs) |
| AngleSingletonScore (IMP::atom) | DistancePairScore (IMP::core) | KinematicForest (IMP::kinematics) | ProjectionParameters (IMP::em2d) | SparseGrid3D (IMP::algebra) |
| AngleTripletScore (IMP::core) | DistanceRestraint (IMP.pmi.restraints.basic) | KinematicForestScoreState (IMP::kinematics) | ProjectionParametersScoreState (IMP::em2d) | SparseGridStorageD (IMP::algebra) |
| AngularVelocity (IMP::atom) | DistanceRestraint (IMP.pmi1.restraints.basic) | KinematicNode (IMP::kinematics) | ProjectionStates (IMP::em2d) | SparseSymmetricPairMemoizer (IMP) |
| ApplicationTestCase (IMP.test) | DistanceRestraint (IMP::core) | KinkPairScore (IMP::spb) | ProteinChainRestraint (IMP::npc) | SparseUnboundedGrid3D (IMP::algebra) |
| ArgumentParser (IMP) | DistanceRMSDMetric (IMP::spb) | KMeans (IMP::kmeans) | ProteinContactRestraint (IMP::npc) | SparseUnboundedGridD (IMP::algebra) |
| Array (IMP) | DistanceTerminiRestraint (IMP::spb) |
| ProteinKinematics (IMP::kinematics) | SphereD (IMP::algebra) |
| AssemblyHeader (IMP::multifit) | DistanceToPointRestraint (IMP.pmi.restraints.basic) | ProteinLigandAtomPairScore (IMP::atom) | SphereDistance (IMP::score_functor) |
| AssemblySymmetryByDihedralRestraint (IMP::npc) | DistanceToPointRestraint (IMP.pmi1.restraints.basic) | LabelGeometry (IMP::display) | ProteinLigandRestraint (IMP::atom) | SphereDistancePairScore (IMP::core) |
| AssemblySymmetryByDistanceRestraint (IMP::npc) | DistributePairsScoreState (IMP::container) | LangevinThermostatOptimizerState (IMP::atom) | ProteinProximityRestraint (IMP::npc) | SphereDistanceToSingletonScore (IMP::core) |
| Assignment (IMP::domino) | DistributeQuadsScoreState (IMP::container) | LateralSurfaceConstraint (IMP::core) | ProteinsAnchorsSamplingSpace (IMP::multifit) | SphereGeometry (IMP::display) |
| AssignmentContainer (IMP::domino) | DistributeSingletonsScoreState (IMP::container) | LeavesRefiner (IMP::core) | ProteomicsData (IMP::multifit) | SpherePatch3D (IMP::algebra) |
| AssignmentsTable (IMP::domino) | DistributeTripletsScoreState (IMP::container) | LennardJones (IMP::atom) | ProteomicsEMAlignmentAtomic (IMP::multifit) | SphericalVector3D (IMP::algebra) |
| AsymUnit (IMP.pmi.mmcif) | Distribution (IMP::saxs) | LennardJonesPairScore (IMP::atom) | ProtocolOutput (IMP.pmi.mmcif) | SpiderHeader (IMP::em) |
| AsymUnit (IMP.pmi1.mmcif) | Distribution (IMP::isd) | LessPairBySecond (IMP::em2d) | ProtocolOutput (IMP.pmi.output) | SpiderImageReaderWriter (IMP::em2d) |
| Atom (IMP::atom) | DockOrder (IMP.EMageFit.buildxlinks) | Line3D (IMP::algebra) | ProtocolOutput (IMP.pmi1.output) | SpiderMapReaderWriter (IMP::em) |
| AtomicCrossLinkMSRestraint (IMP.pmi.restraints.crosslinking) | DOF (IMP::kinematics) | Linear (IMP::core) | ProtocolOutput (IMP.pmi1.mmcif) | State (IMP.pmi.topology) |
| AtomicCrossLinkMSRestraint (IMP.pmi1.restraints.crosslinking) | DOFsSampler (IMP::kinematics) | Linear1DFunction (IMP::isd) | Provenance (IMP::core) | State (IMP.mmcif.util) |
| AtomicCrossLinkMSRestraint (IMP::isd) | DOFValues (IMP::kinematics) | LinearFit2D (IMP::algebra) | Provenanced (IMP::core) | State (IMP::atom) |
| ATOMPDBSelector (IMP::atom) | Domain (IMP::atom) | LinearInteraction (IMP::npctransport) | PseudoAtomicRestraint (IMP.pmi.restraints.stereochemistry) | StateAdaptor (IMP::misc) |
| AtomType (IMP::atom) | DominoModel (IMP.EMageFit.domino_model) | LinearInteractionPairScore (IMP::npctransport) | PseudoAtomicRestraint (IMP.pmi1.restraints.stereochemistry) | StatHierarchyHandler (IMP.pmi1.output) |
| AtomTypePDBSelector (IMP::atom) | DominoSampler (IMP::domino) | LinearLowerBound (IMP::score_functor) | PymolWriter (IMP::display) | StatHierarchyHandler (IMP.pmi.output) |
| AttributeDistancePairScore (IMP::spb) | Dope (IMP::score_functor) | LinearSoftSpherePairScore (IMP::npctransport) | PythonDirectedGraph (IMP) | Statistical (IMP::score_functor) |
| AttributeOptimizer (IMP) | DopePairScore (IMP::atom) | LinearVelocity (IMP::atom) | PythonExampleConstraint (IMP.example) | StatisticalPairScore (IMP::core) |
| AttributeSingletonPredicate (IMP::core) | DummyRestraint (IMP::em2d) | LinearWellPairScore (IMP::npctransport) | PythonExamplePairScore (IMP.example) | Statistics (IMP::npctransport) |
| AverageDistanceLinkage (IMP::em2d) | DummyRestraint (IMP::multifit) | ListAssignmentContainer (IMP::domino) | PythonExampleRestraint (IMP.example) | Statistics (IMP.isd.Statistics) |
|
| DynamicListPairContainer (IMP::container) | ListAssignmentsTable (IMP::domino) | PythonExampleSingletonModifier (IMP.example) | SteepestDescent (IMP::core) |
| DynamicListQuadContainer (IMP::container) | ListPairContainer (IMP::container) | PythonExampleUnaryFunction (IMP.example) | StereochemistryPairFilter (IMP::atom) |
| BackbonePDBSelector (IMP::atom) | DynamicListSingletonContainer (IMP::container) | ListQuadContainer (IMP::container) |
| Stopwatch (IMP.pmi1.tools) |
| BallMover (IMP::symmetry) | DynamicListTripletContainer (IMP::container) | ListSingletonContainer (IMP::container) | Stopwatch (IMP.pmi.tools) |
| BallMover (IMP::core) | DynamicNearestNeighbor3D (IMP::algebra) | ListSubsetFilterTable (IMP::domino) | QuadConstraint (IMP::core) | StructureProvenance (IMP::core) |
| BerendsenThermostatOptimizerState (IMP::atom) |
| ListTripletContainer (IMP::container) | QuadContainer (IMP) | StructureSource (IMP::atom) |
| BinormalTerm (IMP::core) | LoadLink (IMP::rmf) | QuadContainerAdaptor (IMP) | StructureWarning (IMP.pmi) |
| BipartitePairsStatisticsOptimizerState (IMP::npctransport) | EdgePairGeometry (IMP::core) | LocalPlanner (IMP::kinematics) | QuadContainerSet (IMP::container) | StudentTRestraint (IMP::isd) |
| BiStableDistanceRestraint (IMP.pmi.restraints.basic) | EdgePairsGeometry (IMP::core) | LocalSlave (IMP.parallel) | QuadContainerStatistics (IMP::container) | Subset (IMP::domino) |
| BiStableDistanceRestraint (IMP.pmi1.restraints.basic) | ElasticNetworkRestraint (IMP.pmi.restraints.stereochemistry) | LogEmbeddingD (IMP::algebra) | QuadModifier (IMP) | SubsetFilter (IMP::domino) |
| BivariateFunction (IMP::isd) | ElasticNetworkRestraint (IMP.pmi1.restraints.stereochemistry) | LogHolder (IMP.isd.demux_trajs) | QuadPredicate (IMP) | SubsetFilterTable (IMP::domino) |
| BodyStatisticsOptimizerState (IMP::npctransport) | ElectronMicroscopy2D (IMP.pmi.restraints.em2d) | LognormalAmbiguousRestraint (IMP::isd) | QuadraticClosePairsFinder (IMP::core) | SubsetMover (IMP::core) |
| Bond (IMP::atom) | ElectronMicroscopy2D (IMP.pmi1.restraints.em2d) | LogNormalMover (IMP::core) | QuadRestraint (IMP::core) | Surface (IMP::core) |
| ForceFieldParameters::Bond (IMP::atom) | ElectronMicroscopy2D_FFT (IMP.pmi.restraints.em2d) | LognormalRestraint (IMP::isd) | QuadsConstraint (IMP::container) | SurfaceDepthPairScore (IMP::core) |
| BondAngleRevoluteJoint (IMP::kinematics) | ElectronMicroscopy2D_FFT (IMP.pmi1.restraints.em2d) | LogPairScore (IMP::misc) | QuadScore (IMP) | SurfaceDepthPairScore (IMP::score_functor) |
| Bonded (IMP::atom) | ElementTable (IMP::atom) | LogWrapper (IMP::isd) | QuadsOptimizerState (IMP::container) | SurfaceDistancePairScore (IMP::score_functor) |
| BondedPairFilter (IMP::atom) | Ellipsoid3D (IMP::algebra) | LowestRefinedPairScore (IMP::misc) | QuadsRestraint (IMP::container) | SurfaceDistancePairScore (IMP::core) |
| BondEndpointsRefiner (IMP::atom) | EllipsoidGeometry (IMP::display) | LRUCache (IMP) | QuasiNewton (IMP::gsl) | SurfaceGeometry (IMP::core) |
| BondGeometry (IMP::atom) | EM2DRestraint (IMP::spb) |
|
| SurfaceGeometryConstraint (IMP::core) |
| BondGraph (IMP::atom) | Em2DRestraint (IMP::em2d) | SurfaceHeightPairScore (IMP::core) |
| BondPairContainer (IMP::atom) | Em2DRestraintParameters (IMP::em2d) | Manager (IMP.parallel) | RadialDistributionFunction (IMP::saxs) | SurfaceHeightPairScore (IMP::score_functor) |
| BondsGeometry (IMP::atom) | EM2DScore (IMP::em2d) | MapCrossLinkDataBaseOnStructure (IMP.pmi.io.crosslink) | RadiusDependentDistanceMask (IMP::em) | SurfaceMeshGeometry (IMP::display) |
| BondSingletonScore (IMP::atom) | Embedding (IMP::statistics) | MapCrossLinkDataBaseOnStructure (IMP.pmi1.io.crosslink) | RadiusOfGyrationRestraint (IMP::saxs) | SurfaceMover (IMP::core) |
| BoundedGridRangeD (IMP::algebra) | EMReaderWriter (IMP::em) | MapDistanceTransform (IMP::em) | RadiusOfGyrationRestraint (IMP::multifit) | SurfacesGeometry |
| BoundingBoxD (IMP::algebra) | Ensemble (IMP.mmcif.util) | MapReaderWriter (IMP::em) | RAII (IMP) | SurfaceShellDensityMap (IMP::em) |
| BoundingBoxGeometry (IMP::display) | Ensemble (IMP::multifit) | MarginalHBondRestraint (IMP::isd) | RangeViewAssignmentContainer (IMP::domino) | SurfaceSymmetryConstraint (IMP::core) |
| BoxedMover (IMP::spb) | EnsembleGenerator (IMP::multi_state) | MarginalNOERestraint (IMP::isd) | RatioVolatilityScore (IMP::saxs) | SurfaceTetheredChain (IMP::core) |
| BoxSweepClosePairsFinder (IMP::core) | Entity (IMP.pmi.mmcif) | MasksManager (IMP::em2d) | ReadAssignmentContainer (IMP::domino) | Switching (IMP::isd) |
| BranchAndBoundAssignmentsTable (IMP::domino) | Entity (IMP.pmi1.mmcif) | Mass (IMP::atom) | ReadHDF5AssignmentContainer (IMP::domino) | Symmetric (IMP::pmi1) |
| BranchAndBoundSampler (IMP::domino) | Entry (IMP.isd.Entry) | MasterCommunicator (IMP.parallel.master_communicator) | RecursiveAssignmentsTable (IMP::domino) | Symmetric (IMP::pmi) |
| BrownianDynamics (IMP::atom) | EnvelopeFitRestraint (IMP::em) | MatchTemplateResult (IMP::em2d) | RecursivePartitionalClusteringEmbedding (IMP::statistics) | SymmetryRestraint (IMP.pmi1.restraints.stereochemistry) |
| BrownianDynamicsTAMD (IMP::atom) | EnvelopePenetrationRestraint (IMP::em) | MaxVectorKDMetric (IMP::algebra) | RecursivePartitionalClusteringMetric (IMP::statistics) | SymmetryRestraint (IMP.pmi.restraints.stereochemistry) |
| BrownianDynamicsTAMDWithSlabSupport (IMP::npctransport) | EnvelopeScore (IMP::em) | MCCGSampler (IMP::core) | RecursiveStates (IMP::domino) | System (IMP.pmi.topology) |
| BuildModel (IMP.pmi1.macros) | EqualitySubsetFilterTable (IMP::domino) | MeanAbsoluteDifference (IMP::em2d) | RefCountChecker (IMP.test) |
|
| BuildModel1 (IMP.pmi1.macros) | EquivalenceAndExclusionSubsetFilterTable (IMP::domino) | MembraneExclusionRestraint (IMP.npc.npc_restraints) | Reference (IMP::core) |
| BuildSystem (IMP.pmi.macros) | EquivalenceSubsetFilterTable (IMP::domino) | MembraneExclusionRestraint (IMP::npc) | ReferenceFrame3D (IMP::algebra) | TableRefiner (IMP::core) |
|
| Error (IMP.parallel) | MembraneRestraint (IMP::pmi) | ReferenceFrameGeometry (IMP::display) | TALOSReader (IMP.isd.TALOSReader) |
| EuclideanMetric (IMP::statistics) | MembraneRestraint (IMP::pmi1) | ReferenceFrameToText (IMP.EMageFit.imp_general.io) | TALOSRestraint (IMP::isd) |
| CAAngleRestraint (IMP::atom) | EuclideanVectorKDMetric (IMP::algebra) | MembraneSurfaceLocationConditionalRestraint (IMP::npc) | RefinedPairsPairScore (IMP::core) | TAMDCentroid (IMP::atom) |
| CADihedralRestraint (IMP::atom) | LinearInteractionPairScore::EvaluationCache (IMP::npctransport) | MembraneSurfaceLocationConditionalRestraint (IMP.npc.npc_restraints) | Refiner (IMP) | TAMDParticle (IMP::atom) |
| CAlphaPDBSelector (IMP::atom) | EvaluationState (IMP) | MembraneSurfaceLocationRestraint (IMP.npc.npc_restraints) | Reflection3D (IMP::algebra) | TempResidue (IMP.pmi.topology) |
| CappedAssignmentContainer (IMP::domino) | EventException (IMP) | MembraneSurfaceLocationRestraint (IMP::npc) | RegistrationResult (IMP::em2d) | TestCase (IMP.test) |
| CBetaPDBSelector (IMP::atom) | EventPairsOptimizerState (IMP::container) | Memoizer (IMP) | RelativePositionMover (IMP::em2d) | TextInput (IMP) |
| CCDLoopClosure (IMP::kinematics) | EventQuadsOptimizerState (IMP::container) | MergeTreeBuilder (IMP::multifit) | RelaxingSpring (IMP::npctransport) | TextOutput (IMP) |
| CellMover (IMP::spb) | EventSingletonsOptimizerState (IMP::container) | Metric (IMP::statistics) | RemoteError (IMP.parallel) | TextWriter (IMP::display) |
| CenteredMat (IMP::em2d) | EventTripletsOptimizerState (IMP::container) | MetricClosePairsFinder (IMP::misc) | RemoveRigidMotionOptimizerState (IMP::atom) | ThreeToOneConverter (IMP.pmi1.tools) |
| CenterOfMass (IMP::atom) | ExampleComplexRestraint (IMP::example) | MinimumPairRestraint (IMP::container) | RemoveTranslationOptimizerState (IMP::atom) | ThreeToOneConverter (IMP.pmi.tools) |
| Centroid (IMP::core) | ExampleConstraint (IMP::example) | MinimumPairScore (IMP::container) | ReplicaExchange (IMP::mpi) | TIFFImageReaderWriter (IMP::em2d) |
| CentroidOfRefined (IMP::core) | ExampleDecorator (IMP::example) | MinimumQuadRestraint (IMP::container) | ReplicaExchange (IMP.pmi.samplers) | TiltSingletonScore (IMP::spb) |
| Chain (IMP::atom) | ExampleObject (IMP::example) | MinimumQuadScore (IMP::container) | ReplicaExchange (IMP.pmi1.samplers) | TopologyPlot (IMP.pmi1.plotting.topology) |
| ChainPDBSelector (IMP::atom) | ExamplePairScore (IMP::example) | MinimumRestraint (IMP::core) | ReplicaExchange0 (IMP.pmi.macros) | TopologyPlot (IMP.pmi.plotting.topology) |
| ChainStatisticsOptimizerState (IMP::npctransport) | ExampleRestraint (IMP::example) | MinimumRestraintScoreSubsetFilterTable (IMP::domino) | ReplicaExchange0 (IMP.pmi1.macros) | TopologyReader (IMP.pmi.topology) |
| ChainType (IMP::atom) | ExampleSingletonModifier (IMP::example) | MinimumSingletonRestraint (IMP::container) | Representation (IMP.pmi.representation) | TopologyReader (IMP.pmi1.topology) |
| Charged (IMP::atom) | ExampleSubsetFilterTable (IMP::example) | MinimumSingletonScore (IMP::container) | Representation (IMP.pmi1.representation) | Torus3D (IMP::algebra) |
| CHARMMAtom (IMP::atom) | ExampleTemplateClassD (IMP::example) | MinimumSphereDistancePairScore (IMP::npc) | Representation (IMP::atom) | TotalScoreOutput (IMP.pmi.io) |
| CHARMMAtomTopology (IMP::atom) | ExampleUnaryFunction (IMP::example) | MinimumTripletRestraint (IMP::container) | RepulsiveDistancePairScore (IMP::isd) | TotalScoreOutput (IMP.pmi1.io) |
| CHARMMBondEndpoint (IMP::atom) | Exception (IMP) | MinimumTripletScore (IMP::container) | Residue (IMP::atom) | Transform (IMP::core) |
| CHARMMBondParameters (IMP::atom) | ExcludedVolumeRestraint (IMP::core) | MissingFileWarning (IMP.pmi) | ResidueAngleRestraint (IMP.pmi.restraints.stereochemistry) | Transformation2D (IMP::algebra) |
| CHARMMConnection (IMP::atom) | ExcludedVolumeSphere (IMP.pmi.restraints.stereochemistry) | Model (IMP) | ResidueAngleRestraint (IMP.pmi1.restraints.stereochemistry) | Transformation3D (IMP::algebra) |
| CHARMMDihedralParameters (IMP::atom) | ExcludedVolumeSphere (IMP.pmi1.restraints.stereochemistry) | ModelException (IMP) | ResidueBondRestraint (IMP.pmi.restraints.stereochemistry) | Transformation3DToText (IMP.EMageFit.imp_general.io) |
| CharmmForceFieldRestraint (IMP.pmi.restraints.stereochemistry) | ExcludeZRangeSingletonScore (IMP::npctransport) | ModellerRestraints (IMP.modeller) | ResidueBondRestraint (IMP.pmi1.restraints.stereochemistry) | TransformationAndReflectionSymmetry (IMP::core) |
| CharmmForceFieldRestraint (IMP.pmi1.restraints.stereochemistry) | ExclusionSubsetFilterTable (IMP::domino) | ModelLoader (IMP.modeller) | ResidueDihedralRestraint (IMP.pmi.restraints.stereochemistry) | TransformationJoint (IMP::kinematics) |
| CHARMMIdealResidueTopology (IMP::atom) | ExclusiveConsecutivePairContainer (IMP::container) | ModelObject (IMP) | ResidueDihedralRestraint (IMP.pmi1.restraints.stereochemistry) | TransformationSymmetry (IMP::spb) |
| CHARMMInternalCoordinate (IMP::atom) | ExclusiveConsecutivePairFilter (IMP::container) | ModifierVisitor (IMP::core) | ResiduePairListParser (IMP.pmi.io.crosslink) | TransformationSymmetry (IMP::core) |
| CHARMMParameters (IMP::atom) | ExtendedGridIndexD (IMP::algebra) | Mol2Selector (IMP::atom) | ResiduePairListParser (IMP.pmi1.io.crosslink) | TransformationSymmetryMover (IMP::core) |
| CHARMMPatch (IMP::atom) | ExternalBarrier (IMP.pmi.restraints.basic) | MolCnSymmAxisDetector (IMP::cnmultifit) | ResidueRotamer (IMP::rotamer) | TransformedDistancePairScore (IMP::core) |
| CHARMMResidueTopology (IMP::atom) | ExternalBarrier (IMP.pmi1.restraints.basic) | MolecularDynamics (IMP::atom) | ResidueType (IMP::atom) | TransformMover (IMP::pmi1) |
| CHARMMResidueTopologyBase (IMP::atom) | EzRestraint (IMP::atom) | MolecularDynamics (IMP.pmi1.samplers) | ResidueTypePDBSelector (IMP::atom) | TransformMover (IMP::pmi) |
| CHARMMSegmentTopology (IMP::atom) |
| MolecularDynamics (IMP.pmi.samplers) | Resolution (IMP::pmi) | Transporting (IMP::npctransport) |
| CHARMMStereochemistryRestraint (IMP::atom) | MolecularDynamics (IMP::isd) | Resolution (IMP::pmi1) | Triangle3D (IMP::algebra) |
| CHARMMTopology (IMP::atom) | FFTFitting (IMP::multifit) | MolecularDynamicsMover (IMP::isd) | Restraint (IMP::saxs) | TriangleGeometry (IMP::display) |
| ChecksScoreState (IMP::core) | FFTFittingOutput (IMP::multifit) | MolecularDynamicsWithWte (IMP::spb) | Restraint (IMP) | TripletConstraint (IMP::core) |
| ChiFreeScore (IMP::saxs) | FGChain (IMP::npctransport) | Molecule (IMP::atom) | RestraintBase (IMP.pmi.restraints) | TripletContainer (IMP) |
| ChildrenRefiner (IMP::core) | FilterGeometry (IMP::display) | Molecule (IMP.pmi.topology) | RestraintBase (IMP.pmi1.restraints) | TripletContainerAdaptor (IMP) |
| ChiScore (IMP::saxs) | FilterOperator (IMP.pmi.io.crosslink) | MonteCarlo (IMP.pmi1.samplers) | RestraintCache (IMP::domino) | TripletContainerSet (IMP::container) |
| ChiScoreLog (IMP::saxs) | FilterOperator (IMP.pmi1.io.crosslink) | MonteCarlo (IMP.pmi.samplers) | RestraintGeometry (IMP::display) | TripletContainerStatistics (IMP::container) |
| ChiSquaredScore (IMP::em2d) | FilterProvenance (IMP::core) | MonteCarlo (IMP::core) | RestraintInfo (IMP) | TripletModifier (IMP) |
| ChiSquareMetric (IMP::spb) | Fine2DRegistrationRestraint (IMP::em2d) | MonteCarloMover (IMP::core) | RestraintsAdaptor (IMP) | TripletPredicate (IMP) |
| ChiSquareMetric (IMP::statistics) | FitParameters (IMP::saxs) | MonteCarloMoverResult (IMP::core) | RestraintScoreSubsetFilterTable (IMP::domino) | TripletRestraint (IMP::core) |
| CloseBipartitePairContainer (IMP::container) | FitRestraint (IMP::em) | MonteCarloRelativeMoves (IMP.EMageFit.monte_carlo) | RestraintSet (IMP) | TripletsConstraint (IMP::container) |
| ClosedCubicSpline (IMP::core) | FittingSolutionRecord (IMP::multifit) | MonteCarloWithBasinHopping (IMP::core) | RestraintSetGeometry (IMP::display) | TripletScore (IMP) |
| ClosePairContainer (IMP::container) | FittingSolutions (IMP::em) | MonteCarloWithLocalOptimization (IMP::core) | RestraintsScoringFunction (IMP::core) | TripletsOptimizerState (IMP::container) |
| ClosePairsFinder (IMP::core) | FittingStates (IMP::multifit) | MonteCarloWithWte (IMP::spb) | ResultsDB (IMP.EMageFit.solutions_io) | TripletsRestraint (IMP::container) |
| ClosePairsPairScore (IMP::core) | FixedFormatParser (IMP.pmi.io.crosslink) | MoveStatisticsScoreState (IMP::core) | RevoluteJoint (IMP::kinematics) | TruncatedHarmonic (IMP::core) |
| Cluster (IMP.pmi.output) | FixedFormatParser (IMP.pmi1.io.crosslink) | MRCReaderWriter (IMP::em) | RevoluteJointMover (IMP::kinematics) | TwoStateGoModelRestraint (IMP::spb) |
| Cluster (IMP.pmi1.output) | FixedRefiner (IMP::core) | MSConnectivityRestraint (IMP::core) | RigidBodiesImageFitRestraint (IMP::em2d) | Typed (IMP::core) |
| Clustering (IMP.pmi.analysis) | FixedXYZ (IMP::algebra) | MultipleBinormalRestraint (IMP::core) | RigidBodiesProfileHandler (IMP::saxs) | TypedPairScore (IMP::core) |
| Clustering (IMP.pmi1.analysis) | Flag (IMP) | MultiStateModel (IMP::multi_state) | RigidBody (IMP::core) | TypedSitesGeometry (IMP::npctransport) |
| ClusterProvenance (IMP::core) | FloatIndex (IMP) | MultiStateModelScore (IMP::multi_state) | RigidBodyAnglePairScore (IMP::core) | TypeException (IMP) |
| ClusterSet (IMP::em2d) | FNormal (IMP::isd) | MultivariateFNormalSufficient (IMP::isd) | RigidBodyDerivativeGeometry (IMP::core) |
|
| CnSymmAxisDetector (IMP::cnmultifit) | ForceFieldParameters (IMP::atom) | MyMetric (write_a_metric) | RigidBodyDerivativesGeometry (IMP::core) |
| CoarseCC (IMP::em) | ForceSwitch (IMP::atom) | MyOptimizerState (write_an_optimizer_state) | RigidBodyDiffusion (IMP::atom) | UnaryFunction (IMP) |
| CoarseCCatIntervals (IMP::em) | FormFactorTable (IMP::saxs) |
| RigidBodyDistancePairScore (IMP::core) | UnaryFunctionEvaluate (IMP::score_functor) |
| CoarseConvolution (IMP::em) | Fragment (IMP::atom) | RigidBodyFrameGeometry (IMP::core) | UnboundedGridRangeD (IMP::algebra) |
| CoinFlipPairPredicate (IMP::core) | FreelyJointedChain (IMP::misc) | NearestNeighborD (IMP::algebra) | RigidBodyFramesGeometry (IMP::core) | Uncertainty (IMP::pmi) |
| CoinFlipQuadPredicate (IMP::core) | FretData (IMP::isd) | NearestNeighborsClosePairsFinder (IMP::core) | RigidBodyHierarchyGeometry (IMP::core) | Uncertainty (IMP::pmi1) |
| CoinFlipSingletonPredicate (IMP::core) | FretRestraint (IMP::isd) | NeighborsTable (IMP::core) | RigidBodyMember (IMP::core) | UncheckedWeakPointer (IMP) |
| CoinFlipTripletPredicate (IMP::core) | FStudentT (IMP::isd) | NestedRigidBodyStates (IMP::domino) | RigidBodyMover (IMP::symmetry) | Undecorator (IMP) |
| CollisionCrossSection (IMP::em2d) | FunctorLinearInteractionPairScore (IMP::npctransport) | NetworkError (IMP.parallel) | RigidBodyMover (IMP::core) | UniformBackboneSampler (IMP::kinematics) |
| Color (IMP::display) | FunctorLinearSoftSpherePairScore (IMP::npctransport) | NOERestraint (IMP::isd) | RigidBodyNewMover (IMP::spb) | UniformBoundedRestraint (IMP::spb) |
| ColorChange (IMP.pmi.tools) | FusionRestraint (IMP.pmi.restraints.stereochemistry) | NoMoreSlavesError (IMP.parallel) | RigidBodyPackingScore (IMP::spb) | UniformPrior (IMP::isd) |
| ColorChange (IMP.pmi1.tools) | FusionRestraint (IMP.pmi1.restraints.stereochemistry) | NonAlternativePDBSelector (IMP::atom) | RigidBodyStates (IMP::domino) | UnivariateFunction (IMP::isd) |
| Colored (IMP::display) | FuzzyBoolean (IMP.pmi.restraints.proteomics) | NonCopyable (IMP) | RigidBodyTorque (IMP::core) | UnorderedTypePairPredicate (IMP::core) |
| CombineProvenance (IMP::core) | FuzzyBoolean (IMP.pmi1.restraints.proteomics) | NonHydrogenMol2Selector (IMP::atom) | RigidBodyTunneler (IMP::core) | UnorderedTypeQuadPredicate (IMP::core) |
| CommandDispatcher (IMP) | FuzzyRestraint (IMP.pmi.restraints.proteomics) | NonHydrogenPDBSelector (IMP::atom) | RigidBodyUmbrella (IMP::core) | UnorderedTypeSingletonPredicate (IMP::core) |
| CommonEndpointPairFilter (IMP::misc) | FuzzyRestraint (IMP.pmi1.restraints.proteomics) | NonRigidMember (IMP::core) | RigidClosePairsFinder (IMP::core) | UnorderedTypeTripletPredicate (IMP::core) |
| CompareMultiStateModels (IMP::multi_state) |
| NonWaterNonHydrogenPDBSelector (IMP::atom) | RigidLeavesRefiner (IMP::multifit) | UsageException (IMP) |
| ComplementarityRestraint (IMP::multifit) | NonWaterPDBSelector (IMP::atom) | RigidMember (IMP::core) |
|
| CompleteLinkage (IMP::em2d) | Gaussian (IMP::spb) | NormalizedSphereDistancePairScore (IMP::core) | RMFFrame (IMP.mmcif.util) |
| ComponentHeader (IMP::multifit) | Gaussian (IMP::core) | NormalMover (IMP::core) | RMFHierarchyHandler (IMP.pmi.output) | Value (IMP) |
| CompositeJoint (IMP::kinematics) | Gaussian3D (IMP::algebra) | NormalSigmaPCRestraint (IMP::isd) | RMFHierarchyHandler (IMP.pmi1.output) | ValueException (IMP) |
| CompositeRestraint (IMP.pmi.restraints.proteomics) | GaussianAnchorEMRestraint (IMP::isd) | NotPDBSelector (IMP::atom) | RMSD (IMP.pmi.analysis) | Vector (IMP) |
| CompositeRestraint (IMP.pmi1.restraints.proteomics) | GaussianEMRestraint (IMP.pmi.restraints.em) | NPDBSelector (IMP::atom) | RMSD (IMP.pmi1.analysis) | VectorBaseD (IMP::algebra) |
| CompositeRestraint (IMP::npc) | GaussianEMRestraint (IMP.pmi1.restraints.em) | Nuisance (IMP::isd) | RMSDMetric (IMP::spb) | VectorD (IMP::algebra) |
| CompositeRestraint (IMP::pmi) | GaussianEMRestraint (IMP::isd) | NuisanceRangeModifier (IMP::spb) | RMSDOutput (IMP.pmi1.io) | VectorDEmbedding (IMP::statistics) |
| CompositeRestraint (IMP::pmi1) | GaussianProcessInterpolation (IMP::isd) |
| RotamerAngleTuple (IMP::rotamer) | VectorKDMetric (IMP::algebra) |
| CompoundStates (IMP::domino) | GaussianProcessInterpolationRestraint (IMP::isd) | RotamerCalculator (IMP::rotamer) | VelocityScalingOptimizerState (IMP::atom) |
| Cone3D (IMP::algebra) | GaussianRestraint (IMP::isd) | Object (IMP) | RotamerLibrary (IMP::rotamer) | VersionInfo (IMP) |
| Configuration (IMP) | GeneralizedGuinierPorodFunction (IMP::isd) | OneDimensionalDistribution (IMP::isd) | Rotation2D (IMP::algebra) | VolumeRestraint (IMP::core) |
| ConfigurationSet (IMP) | GenericAttributeSingletonScore (IMP::core) | OneDimensionalSufficientDistribution (IMP::isd) | Rotation3D (IMP::algebra) | Voxel (IMP::em) |
| ConfigurationSetRMSDMetric (IMP::statistics) | GenericBoundingBox3DSingletonScore (IMP::core) | OpenCubicSpline (IMP::score_functor) | RRT (IMP::kinematics) |
|
| ConfigurationSetXYZEmbedding (IMP::statistics) | GenericBoundingSphere3DSingletonScore (IMP::core) | OpenCubicSpline (IMP::core) | RRT::RRTNode (IMP::kinematics) |
| ConjugateGradients (IMP.pmi.samplers) | GenericDistanceToSingletonScore (IMP::core) | Optimizer (IMP) |
| WarningContext (IMP) |
| ConjugateGradients (IMP.pmi1.samplers) | GeometricHash (IMP::multifit) | OptimizerState (IMP) | WaterPDBSelector (IMP::atom) |
| ConjugateGradients (IMP::gsl) | GeometricPrimitiveD (IMP::algebra) | Order (IMP::domino) | SameParticlePairFilter (IMP::spb) | WeakPointer (IMP) |
| ConjugateGradients (IMP::core) | Geometry (IMP::display) | OrderedDefaultDict (IMP.pmi.tools) | SameResiduePairFilter (IMP::atom) | Weight (IMP::isd) |
| ConnectingPairContainer (IMP::container) | GeometryProcessor (IMP::display) | OrderedDefaultDict (IMP.pmi1.tools) | SameRigidBodyPairFilter (IMP::spb) | WeightedDerivativesToRefined (IMP::core) |
| ConnectivityCrossLinkMS (IMP.pmi1.restraints.crosslinking) | GeometrySet (IMP::display) | OrderedTypePairPredicate (IMP::core) | SampleAssignmentContainer (IMP::domino) | WeightedExcludedVolumeRestraint (IMP::multifit) |
| ConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) | GetModelDensity (IMP.pmi.analysis) | OrderedTypeQuadPredicate (IMP::core) | SampledDensityMap (IMP::em) | WeightedFitParameters (IMP::saxs) |
| ConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics) | GetModelDensity (IMP.pmi1.analysis) | OrderedTypeSingletonPredicate (IMP::core) | SampleProvenance (IMP::core) | WeightedProfileFitter (IMP::saxs) |
| ConnectivityRestraint (IMP.pmi.restraints.proteomics) | GlobalStatisticsOptimizerState (IMP::npctransport) | OrderedTypeTripletPredicate (IMP::core) | Sampler (IMP) | WeightedSphereDistancePairScore (IMP::core) |
| ConnectivityRestraint (IMP.pmi.restraints.stereochemistry) | GMMParser (IMP.pmi.mmcif) | OrientedSoap (IMP::score_functor) | SaveLink (IMP::rmf) | WeightedSum (IMP::core) |
| ConnectivityRestraint (IMP.pmi1.restraints.proteomics) | GridClosePairsFinder (IMP::core) | OrientedSoapPairScore (IMP::atom) | SaveOptimizerState (IMP::rmf) | WeightedSumOfExponential (IMP::core) |
| ConnectivityRestraint (IMP.pmi1.restraints.stereochemistry) | GridD (IMP::algebra) | OrPDBSelector (IMP::atom) | SaveToConfigurationSetOptimizerState (IMP) | WeightMover (IMP::isd) |
| ConnectivityRestraint (IMP::core) | GridIndexD (IMP::algebra) | Output (IMP.pmi.output) | SAXSISDRestraint (IMP.pmi.restraints.saxs) | WeightRestraint (IMP::isd) |
| ConnollySurfacePoint (IMP::algebra) | GridStates (IMP::em2d) | Output (IMP.pmi1.output) | SAXSISDRestraint (IMP.pmi1.restraints.saxs) | WeightRestraint (IMP.pmi.restraints.parameters) |
| ConsecutivePairContainer (IMP::container) | GSLOptimizer (IMP::gsl) | OutputStatistics (IMP.pmi.output) | SAXSMultiStateModelScore (IMP::multi_state) | WeightRestraint (IMP.pmi1.restraints.parameters) |
| ConsecutivePairFilter (IMP::container) |
| OutputStatistics (IMP.pmi1.output) | SAXSRestraint (IMP.pmi1.restraints.saxs) | WeightScore (IMP::score_functor) |
| ConstantPairPredicate (IMP::core) |
| SAXSRestraint (IMP.pmi.restraints.saxs) | WormLikeChain (IMP::misc) |
| ConstantQuadPredicate (IMP::core) | Harmonic (IMP::score_functor) | Scale (IMP::isd) | WriteAssignmentContainer (IMP::domino) |
| ConstantRestraint (IMP::core) | Harmonic (IMP::core) | PackedAssignmentContainer (IMP::domino) | ScopedAddCacheAttribute (IMP) | WriteHDF5AssignmentContainer (IMP::domino) |
| ConstantSingletonPredicate (IMP::core) | HarmonicDistancePairScore (IMP::core) | PairConstraint (IMP::core) | ScopedSetAttribute (IMP) | WriteOptimizerState (IMP::display) |
| ConstantTripletPredicate (IMP::core) | HarmonicLowerBound (IMP::score_functor) | PairContainer (IMP) | Score (IMP::score_functor) | WritePDBOptimizerState (IMP::atom) |
| Constraint (IMP) | HarmonicLowerBound (IMP::core) | PairContainerAdaptor (IMP) | ScoreAccumulator (IMP) | Writer (IMP::display) |
| ConstVector (IMP) | HarmonicSphereDistancePairScore (IMP::core) | PairContainerSet (IMP::container) | ScoreFunction (IMP::em2d) | WriterAdaptor (IMP::display) |
| ContactMapMetric (IMP::spb) | HarmonicSpringSingletonScore (IMP::npctransport) | PairContainerStatistics (IMP::container) | ScoreState (IMP) | WriteRestraintScoresOptimizerState (IMP::core) |
| Container (IMP) | HarmonicSurfaceDepthPairScore (IMP::core) | PairGeometry (IMP::display) | ScoreUnaryFunction (IMP::score_functor) |
|
| Context (IMP.parallel) | HarmonicSurfaceDistancePairScore (IMP::core) | PairListSubsetFilterTable (IMP::domino) | Scoring (IMP::npctransport) |
| Copy (IMP::atom) | HarmonicSurfaceHeightPairScore (IMP::core) | PairModifier (IMP) | ScoringFunction (IMP) | Xlink (IMP.EMageFit.buildxlinks) |
| Cosine (IMP::core) | HarmonicUpperBound (IMP::score_functor) | PairPredicate (IMP) | ScoringFunctionAdaptor (IMP) | XlinksDict (IMP.EMageFit.buildxlinks) |
| CoulombPairScore (IMP::atom) | HarmonicUpperBound (IMP::core) | PairRestraint (IMP::core) | ScriptProvenance (IMP::core) | XLTable (IMP.pmi1.io.xltable) |
| Covariance1DFunction (IMP::isd) | HarmonicUpperBoundSphereDiameterPairScore (IMP::core) | PairsConstraint (IMP::container) | SecondaryStructure (IMP.pmi1.restraints.stereochemistry) | XorPDBSelector (IMP::atom) |
| Cover (IMP::core) | HarmonicUpperBoundSphereDistancePairScore (IMP::core) | PairScore (IMP) | SecondaryStructure (IMP.pmi.restraints.stereochemistry) | XplorReaderWriter (IMP::em) |
| CoverBond (IMP::atom) | HarmonicWell (IMP::core) | PairsGeometry (IMP::display) | SecondaryStructureResidue (IMP::atom) | XYRadialPositionLowerRestraint (IMP::npc) |
| CoverRefined (IMP::core) | HarmonicWellPairScore (IMP::npctransport) | PairsOptimizerState (IMP::container) | Segment3D (IMP::algebra) | XYRadialPositionLowerRestraint (IMP.npc.npc_restraints) |
| CPDBSelector (IMP::atom) | HasHigherCCC (IMP::em2d) | PairsRestraint (IMP::container) | SegmentationParameters (IMP::em2d) | XYRadialPositionRestraint (IMP::npc) |
| CreateLogContext (IMP) | HasLowerScore (IMP::em2d) | ParabolicFit2D (IMP::algebra) | SegmentGeometry (IMP::display) | XYRadialPositionRestraint (IMP.npc.npc_restraints) |
| CrossCorrelationRestraint (IMP.pmi.restraints.em) | HeapAssignmentContainer (IMP::domino) | ParameterWarning (IMP.pmi) | Segments (IMP.pmi.tools) | XYRadialPositionUpperRestraint (IMP::npc) |
| CrossCorrelationRestraint (IMP.pmi1.restraints.em) | HeapRecord (IMP.EMageFit.solutions_io) | Particle (IMP) | Segments (IMP.pmi1.tools) | XYRadialPositionUpperRestraint (IMP.npc.npc_restraints) |
| CrossLinkData (IMP::isd) | HelixDecorator (IMP::spb) | ParticleAdaptor (IMP) | Selection (IMP::atom) | XYZ (IMP::core) |
| CrossLinkDataBase (IMP.pmi.io.crosslink) | HelixRestraint (IMP.pmi.restraints.stereochemistry) | ParticleEmbedding (IMP::statistics) | SelectionGeometry (IMP::atom) | XYZDerivativeGeometry (IMP::core) |
| CrossLinkDataBaseFromStructure (IMP.pmi.io.crosslink) | HelixRestraint (IMP.pmi1.restraints.stereochemistry) | ParticleFactory (IMP::npctransport) | Sequences (IMP.pmi1.topology) | XYZDerivativesGeometry (IMP::core) |
| CrossLinkDataBaseFromStructure (IMP.pmi1.io.crosslink) | HelixRestraint (IMP::atom) | ParticleIndexAdaptor (IMP) | Sequences (IMP.pmi.topology) | XYZR (IMP::core) |
| CrossLinkDataBaseKeywordsConverter (IMP.pmi.io.crosslink) | HierarchiesGeometry (IMP::atom) | ParticleIndexesAdaptor (IMP) | SerialMover (IMP::core) | XYZRGeometry (IMP::core) |
| CrossLinkDataBaseKeywordsConverter (IMP.pmi1.io.crosslink) | Hierarchy (IMP::core) | ParticleIndexPairsAdaptor (IMP) | SetCheckState (IMP) | XYZRsGeometry (IMP::core) |
| CrossLinkingMassSpectrometryRestraint (IMP.pmi.restraints.crosslinking) | Hierarchy (IMP::atom) | ParticleInputs (IMP) | SetLogState (IMP) | XYZStates (IMP::domino) |
| CrossLinkingMassSpectrometryRestraint (IMP.pmi1.restraints.crosslinking) | HierarchyCounter (IMP::core) | ParticleOutputs (IMP) | SetLogTarget (IMP) |
|
| CrossLinkMS (IMP.pmi1.nonmantained) | HierarchyDatabase (IMP.pmi.tools) | ParticlesAdaptor (IMP::domino) | SetNumberOfThreads (IMP) |
| CrossLinkMSRestraint (IMP::isd) | HierarchyDatabase (IMP.pmi1.tools) | ParticlesDummyRestraint (IMP::em2d) | SettingsData (IMP::multifit) | YAxialPositionLowerRestraint (IMP::npc) |
| CrossLinkTable (IMP.pmi.analysis) | HierarchyGeometry (IMP::atom) | ParticleStates (IMP::domino) | SetupConnectivityNetworkRestraint (IMP.pmi.restraints.proteomics) | YAxialPositionLowerRestraint (IMP.npc.npc_restraints) |
| CrossLinkTable (IMP.pmi1.analysis) | HierarchyLoadLink (IMP::rmf) | ParticleStatesTable (IMP::domino) | SetupConnectivityNetworkRestraint (IMP.pmi1.restraints.proteomics) | YAxialPositionRestraint (IMP.npc.npc_restraints) |
| CustomXYZR (IMP::misc) | HierarchySaveLink (IMP::rmf) | ParticleTransportStatisticsOptimizerState (IMP::npctransport) | SetupMembraneRestraint (IMP.pmi1.restraints.proteomics) | YAxialPositionRestraint (IMP::npc) |
| CvEstimator (IMP.isd.TuneRex) | HierarchyTraits (IMP::core) | PartitionalClustering (IMP::statistics) | SGEPESlaveArray (IMP.parallel) | YAxialPositionUpperRestraint (IMP::npc) |
| Cylinder3D (IMP::algebra) | HierarchyVisitor (IMP::core) | PartitionalClusteringWithCenter (IMP::statistics) | SGEQsubSlaveArray (IMP.parallel) | YAxialPositionUpperRestraint (IMP.npc.npc_restraints) |
| CylinderGeometry (IMP::display) | HierarchyWithSitesLoadLink (IMP::npctransport) | PathLocalPlanner (IMP::kinematics) | Shift (IMP::score_functor) |
|
| CylinderRestraint (IMP.pmi.restraints.basic) | HierarchyWithSitesSaveLink (IMP::npctransport) | PbcBoxedMover (IMP::spb) | Showable (IMP) |
| CylinderRestraint (IMP.pmi1.restraints.basic) | HighDensityEmbedding (IMP::em) | PbcBoxedRigidBodyMover (IMP::spb) | SigmoidRestraintSphere (IMP::pmi) | ZAxialPositionLowerRestraint (IMP::npc) |
| CysteineCrossLinkData (IMP::isd) | HistogramD (IMP::statistics) | PCAAligner (IMP::em) | SigmoidRestraintSphere (IMP::pmi1) | ZAxialPositionLowerRestraint (IMP.npc.npc_restraints) |
| CysteineCrossLinkRestraint (IMP::isd) | History (IMP.isd.History) | PCAFitRestraint (IMP::em) | SimpleAssignmentsTable (IMP::domino) | ZAxialPositionRestraint (IMP::npc) |
|
| HybridMonteCarlo (IMP::isd) | PCAFitRestraint (IMP::em2d) | SimpleLoadLink (IMP::rmf) | ZAxialPositionRestraint (IMP.npc.npc_restraints) |
| HydrogenPDBSelector (IMP::atom) | PDBSelector (IMP::atom) | SimpleSaveLink (IMP::rmf) | ZAxialPositionUpperRestraint (IMP::npc) |
| Database2 (IMP.EMageFit.database) |
| PDBSequences (IMP.pmi.topology) | Simplex (IMP::gsl) | ZAxialPositionUpperRestraint (IMP.npc.npc_restraints) |
| DataEntry (IMP.pmi.output) | PenalizedComplexityPrior (IMP::isd) | SimulationData (IMP::npctransport) | ZBiasSingletonScore (IMP::npctransport) |
| DataEntry (IMP.pmi1.output) | Image (IMP::em2d) | PerinuclearVolumeLocationRestraint (IMP::npc) | Simulator (IMP::atom) |
|
| DataObject (IMP::core) | ImageHeader (IMP::em) | PermutationStates (IMP::domino) | SingleLinkage (IMP::em2d) |
| DataPointsAssignment (IMP::multifit) | ImageReaderWriter (IMP::em2d) | Pipe (IMP.isd.utils) | SingletonConstraint (IMP::core) | piecewise_linear_distribution (IMP) |
| DecayPairContainerOptimizerState (IMP::misc) | IMPRestraints (IMP.modeller) | PivyWriter (IMP::display) | SingletonContainer (IMP) |
|
| Decorator (IMP) | ImproperSingletonScore (IMP::atom) | Plane3D (IMP::algebra) | SingletonContainerAdaptor (IMP) |
| DefaultEmbeddingD (IMP::algebra) | InBoundingBox3DSingletonPredicate (IMP::core) | PlaneDihedralRestraint (IMP.pmi1.restraints.stereochemistry) | SingletonContainerSet (IMP::container) | sfo_common (IMP.isd.shared_functions) |
| | | | |
