IMP.pmi.mmcif.Entity Class Reference

A single entity in the system. More...

Inherits Entity.

Detailed Description

A single entity in the system.

This functions identically to the base ihm.Entity class, but it allows identifying residues by either the IHM numbering scheme (seq_id, which is always contiguous starting at 1) or by the PMI scheme (which is similar, but may not start at 1 if the sequence in the FASTA file has one or more N-terminal gaps

Note

This class is only available in Python.

Definition at line 1097 of file mmcif.py.

Public Member Functions
def	pmi_range
	Return a range of IHM residues indexed using PMI numbering. More...
def	pmi_residue
	Return a single IHM residue indexed using PMI numbering. More...

Member Function Documentation

def IMP.pmi.mmcif.Entity.pmi_range	(		self,
			res_id_begin,
			res_id_end
	)

Return a range of IHM residues indexed using PMI numbering.

Definition at line 1114 of file mmcif.py.

def IMP.pmi.mmcif.Entity.pmi_residue	(		self,
			res_id
	)

Return a single IHM residue indexed using PMI numbering.

Definition at line 1110 of file mmcif.py.

---

The documentation for this class was generated from the following file:

• mmcif.py