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IMP Reference Guide
2.11.0
The Integrative Modeling Platform
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A container that returns pairs of the endpoints of the bonds. More...
#include <IMP/atom/BondPairContainer.h>
Inheritance diagram for IMP::atom::BondPairContainer:A container that returns pairs of the endpoints of the bonds.
Turn a container of Bond particles into a container of ParticlePair objects of the endpoints.
Definition at line 30 of file BondPairContainer.h.
Public Member Functions | |
| BondPairContainer (SingletonContainer *sc) | |
| The container containing the bonds. More... | |
| template<class F > | |
| void | apply_generic (F *f) const |
| void | do_apply (const PairModifier *sm) const |
| virtual ModelObjectsTemp | do_get_inputs () const |
| ParticleIndexes | get_all_possible_indexes () const |
| Get contained particles. More... | |
| virtual ParticleIndexPairs | get_indexes () const |
| virtual ParticleIndexPairs | get_range_indexes () const |
| virtual std::string | get_type_name () const |
| virtual ::IMP::VersionInfo | get_version_info () const |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::PairContainer | |
| void | apply (const PairModifier *sm) const |
| Apply a SingletonModifier to the contents. More... | |
| void | apply_generic (const PairModifier *m) const |
| Just use apply() in the base class. More... | |
| const ParticleIndexPairs & | get_contents () const |
| ParticlePair | get_particle_pair (unsigned int i) const |
| ParticlePairsTemp | get_particle_pairs () const |
| Public Member Functions inherited from IMP::Container | |
| ModelObjectsTemp | do_get_outputs () const |
| containers don't have outputs More... | |
| std::size_t | get_contents_hash () const |
| virtual bool | get_is_decomposable () const |
| Public Member Functions inherited from IMP::ModelObject | |
| ModelObject (Model *m, std::string name) | |
| bool | get_has_dependencies () const |
| Return whether this object has dependencies computed. More... | |
| bool | get_has_required_score_states () const |
| Return whether score states are computed. More... | |
| ModelObjectsTemp | get_inputs () const |
| ModelObjectsTemps | get_interactions () const |
| Get the interacting sets induced by this ModelObject. More... | |
| Model * | get_model () const |
| ModelObjectsTemp | get_outputs () const |
| const ScoreStatesTemp & | get_required_score_states () const |
| Get the score states that are ancestors of this in the dependency graph. More... | |
| void | set_has_dependencies (bool tf) |
| Either invalidate the dependencies or ensure they are correct. More... | |
| void | set_has_required_score_states (bool tf) |
| Compute the required score states. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::PairContainer | |
| typedef ParticleIndexPair | ContainedIndexType |
| typedef ParticleIndexPairs | ContainedIndexTypes |
| typedef ParticlePair | ContainedType |
| typedef ParticlePairsTemp | ContainedTypes |
| typedef PairModifier | Modifier |
| typedef const ParticleIndexPair & | PassContainedIndexType |
| Protected Member Functions inherited from IMP::PairContainer | |
| PairContainer (Model *m, std::string name="PairContainer %1%") | |
| virtual bool | do_get_provides_access () const |
| Protected Member Functions inherited from IMP::Container | |
| Container (Model *m, std::string name="Container %1%") | |
| Protected Member Functions inherited from IMP::ModelObject | |
| virtual ModelObjectsTemps | do_get_interactions () const |
| virtual void | handle_set_has_required_score_states (bool) |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::atom::BondPairContainer::BondPairContainer | ( | SingletonContainer * | sc | ) |
The container containing the bonds.
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Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.
Implements IMP::ModelObject.
Definition at line 53 of file BondPairContainer.h.
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Get contained particles.
Get a list of all particles contained in this one, given that the input containers are up to date.
Implements IMP::Container.
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Get all the indexes contained in the container.
This should be protected but isn't for compatibility reasons.
External callers should use get_contents().
Implements IMP::PairContainer.
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Get all the indexes that might possibly be contained in the container, useful with dynamic containers. For example, with a container::ClosePairContainer, this is the list of all pairs taken from input list (those that are far apart in addition to those that are close).
Implements IMP::PairContainer.
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Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 58 of file BondPairContainer.h.