rigid_fitting.h File Reference
preforms rigid fitting between a set of particles and a density map More...
#include <IMP/core/MonteCarlo.h>#include <IMP/core/ConjugateGradients.h>#include <IMP/RestraintSet.h>#include <IMP/algebra/Transformation3D.h>#include <IMP/VersionInfo.h>#include <IMP/Particle.h>#include <IMP/Model.h>#include "DensityMap.h"#include "FitRestraint.h"#include <IMP/em/em_config.h>#include <IMP/OptimizerState.h>#include <IMP/core/rigid_bodies.h>#include <IMP/ScoreState.h>#include <algorithm>
Include dependency graph for rigid_fitting.h: This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Classes | |
| class | IMP::em::FittingSolutions |
| A simple list of fitting solutions. More... | |
Namespaces | |
| namespace | IMP |
| All IMP::kernel code is brought into the IMP namespace. | |
| namespace | IMP::em |
| See IMP.em Overview for more information. | |
Typedefs | |
| typedef IMP::base::Vector < FittingSolutions > | IMP::em::FittingSolutionsList |
Functions | |
| Float | IMP::em::compute_fitting_score (const ParticlesTemp &ps, DensityMap *em_map, FloatKey wei_key=atom::Mass::get_mass_key()) |
| Compute fitting scores for a given set of rigid transformations. More... | |
| FittingSolutions | IMP::em::compute_fitting_scores (const ParticlesTemp &ps, DensityMap *em_map, const algebra::Transformation3Ds &transformations, bool fast_version=false, bool local_score=false, const FloatKey &wei_key=atom::Mass::get_mass_key()) |
| Compute fitting scores for a given set of rigid transformations. More... | |
| FittingSolutions | IMP::em::compute_fitting_scores (DensityMap *em_map, core::RigidBody rb, Refiner *refiner, const algebra::Transformation3Ds &transformations) |
| Compute fitting scores for a given set of rigid transformations. More... | |
| FittingSolutions | IMP::em::local_rigid_fitting (Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=true) |
| Local rigid fitting of a rigid body. More... | |
| FittingSolutions | IMP::em::local_rigid_fitting_around_point (Particle *p, Refiner *refiner, const FloatKey &weight_key, DensityMap *dmap, const algebra::Vector3D &anchor_centroid, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3, bool fast=false) |
| Local rigid fitting of a rigid body around a center point. More... | |
| FittingSolutions | IMP::em::local_rigid_fitting_around_points (Particle *p, Refiner *refiner, const FloatKey &wei_key, DensityMap *dmap, const algebra::Vector3Ds &anchor_centroids, OptimizerStates display_log, Int number_of_optimization_runs=5, Int number_of_mc_steps=10, Int number_of_cg_steps=100, Float max_translation=2., Float max_rotation=.3) |
| Local rigid fitting of a rigid body around a set of center points. More... | |
| FittingSolutions | IMP::em::local_rigid_fitting_grid_search (const ParticlesTemp &ps, const FloatKey &wei_key, DensityMap *dmap, Int max_voxels_translation=2, Int translation_step=1, Float max_angle_in_radians=0.174, Int number_of_rotations=100) |
| Local grid search rigid fitting. More... | |
Detailed Description
Copyright 2007-2013 IMP Inventors. All rights reserved.
Definition in file rigid_fitting.h.