DensityMap.h File Reference
Class for handling density maps. More...
#include <IMP/Pointer.h>#include <IMP/em/em_config.h>#include "DensityHeader.h"#include "MapReaderWriter.h"#include <IMP/Object.h>#include <IMP/algebra/Vector3D.h>#include <IMP/algebra/BoundingBoxD.h>#include <IMP/algebra/Transformation3D.h>#include <boost/scoped_array.hpp>#include <iostream>#include <iomanip>#include <IMP/algebra/standard_grids.h>
Include dependency graph for DensityMap.h: This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Classes | |
| class | IMP::em::DensityMap |
| Class for handling density maps. More... | |
Namespaces | |
| namespace | IMP |
| All IMP::kernel code is brought into the IMP namespace. | |
| namespace | IMP::em |
| See IMP.em Overview for more information. | |
Typedefs | |
| typedef IMP::base::Vector < IMP::base::Pointer < DensityMap > > | IMP::em::DensityMaps |
| rotate a grid More... | |
Functions | |
| Float | IMP::em::approximate_molecular_mass (DensityMap *m, Float threshold) |
| DensityMap * | IMP::em::binarize (DensityMap *orig_map, float threshold, bool reverse=false) |
| double | IMP::em::convolute (const DensityMap *m1, const DensityMap *m2) |
| DensityMap * | IMP::em::create_density_map (const DensityMap *other) |
| create a copy of another map | |
| DensityMap * | IMP::em::create_density_map (const algebra::BoundingBox3D &bb, double spacing) |
| Create an empty density map from a boudning box. | |
| DensityMap * | IMP::em::create_density_map (int nx, int ny, int nz, double spacing) |
| Create an empty density map. | |
| DensityMap * | IMP::em::create_density_map (const algebra::GridD< 3, algebra::DenseGridStorageD< 3, float >, float > &grid) |
| DensityMap * | IMP::em::get_binarized_interior (DensityMap *dmap) |
| Return a binaries density map with 1 for voxels that are internal. | |
| algebra::BoundingBoxD< 3 > | IMP::em::get_bounding_box (const DensityMap *m, Float threshold) |
| algebra::BoundingBoxD< 3 > | IMP::em::get_bounding_box (const DensityMap *m) |
| double | IMP::em::get_density (const DensityMap *m, const algebra::Vector3D &v) |
| algebra::GridD < 3, algebra::DenseGridStorageD < 3, float >, float > | IMP::em::get_grid (DensityMap *in_map) |
| bool | IMP::em::get_interiors_intersect (const DensityMap *d1, const DensityMap *d2) |
| DensityMap * | IMP::em::get_max_map (DensityMaps maps) |
| DensityMap * | IMP::em::get_resampled (DensityMap *input, double scaling) |
| Get a resampled version of the map. More... | |
| DensityMap * | IMP::em::get_segment (DensityMap *map_to_segment, int nx_start, int nx_end, int ny_start, int ny_end, int nz_start, int nz_end) |
| Get a segment of the map according to xyz indexes. More... | |
| DensityMap * | IMP::em::get_segment (DensityMap *map_to_segment, algebra::Vector3Ds vecs, float dist) |
| Get a segment of the map covered by the input points. | |
| DensityMap * | IMP::em::get_segment_by_masking (DensityMap *map_to_segment, DensityMap *mask, float mas_threshold) |
| Get a segment of the map covered by another map. | |
| double | IMP::em::get_sum (const DensityMap *m1) |
| Return the sum of all voxels. | |
| DensityMap * | IMP::em::get_threshold_map (DensityMap *orig_map, float threshold) |
| DensityMap * | IMP::em::get_transformed (const DensityMap *input, const algebra::Transformation3D &tr, double threshold) |
| DensityMap * | IMP::em::get_transformed (DensityMap *input, const algebra::Transformation3D &tr) |
| void | IMP::em::get_transformed_into (const DensityMap *source, const algebra::Transformation3D &tr, DensityMap *into, bool calc_rms=true) |
| Rotate a density map into another map. More... | |
| void | IMP::em::get_transformed_into2 (const DensityMap *source, const algebra::Transformation3D &tr, DensityMap *into) |
| DensityMap * | IMP::em::interpolate_map (DensityMap *in_map, double new_spacing) |
| DensityMap * | IMP::em::multiply (const DensityMap *m1, const DensityMap *m2) |
| DensityMap * | IMP::em::read_map (std::string filename, MapReaderWriter *reader) |
| DensityMap * | IMP::em::read_map (std::string filename) |
| void | IMP::em::write_map (DensityMap *m, std::string filename, MapReaderWriter *writer) |
| void | IMP::em::write_map (DensityMap *m, std::string filename) |
Detailed Description
Copyright 2007-2013 IMP Inventors. All rights reserved.
Definition in file DensityMap.h.