IMP  2.0.1
The Integrative Modeling Platform
hierarchical_clustering.h File Reference

Agglomerative clustering algorithm. More...

#include "IMP/em2d/em2d_config.h"
#include "IMP/em2d/scores2D.h"
#include "IMP/base_types.h"
#include <IMP/log.h>
#include <vector>
#include <list>
#include <algorithm>
#include <limits>
#include <functional>
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Namespaces

namespace  IMP
 All IMP::kernel code is brought into the IMP namespace.
 
namespace  IMP::em2d
 See IMP.em2d Overview for more information.
 

Typedefs

typedef IMP::base::Vector
< AverageDistanceLinkage > 
IMP::em2d::AverageDistanceLinkages
 
typedef IMP::base::Vector
< ClusterSet > 
IMP::em2d::ClusterSets
 
typedef IMP::base::Vector
< CompleteLinkage > 
IMP::em2d::CompleteLinkages
 
typedef std::list
< pair_cluster_id_distance > 
IMP::em2d::list_cluster_id_distance
 
typedef std::pair< unsigned
int,double > 
IMP::em2d::pair_cluster_id_distance
 
typedef IMP::base::Vector
< SingleLinkage > 
IMP::em2d::SingleLinkages
 
typedef FloatsList IMP::em2d::VectorOfFloats
 
typedef IntsList IMP::em2d::VectorOfInts
 

Functions

template<class LinkageFunction >
ClusterSet IMP::em2d::do_hierarchical_agglomerative_clustering (const FloatsList &distances)
 
template<class T >
void IMP::em2d::print_vector (const std::vector< T > &v)
 

Detailed Description

Copyright 2007-2013 IMP Inventors. All rights reserved.

Definition in file hierarchical_clustering.h.