IMP  2.0.1
The Integrative Modeling Platform
rotamer/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 2.0.8
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 
9 from sys import version_info
10 if version_info >= (2,6,0):
11  def swig_import_helper():
12  from os.path import dirname
13  import imp
14  fp = None
15  try:
16  fp, pathname, description = imp.find_module('_IMP_rotamer', [dirname(__file__)])
17  except ImportError:
18  import _IMP_rotamer
19  return _IMP_rotamer
20  if fp is not None:
21  try:
22  _mod = imp.load_module('_IMP_rotamer', fp, pathname, description)
23  finally:
24  fp.close()
25  return _mod
26  _IMP_rotamer = swig_import_helper()
27  del swig_import_helper
28 else:
29  import _IMP_rotamer
30 del version_info
31 try:
32  _swig_property = property
33 except NameError:
34  pass # Python < 2.2 doesn't have 'property'.
35 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
36  if (name == "thisown"): return self.this.own(value)
37  if (name == "this"):
38  if type(value).__name__ == 'SwigPyObject':
39  self.__dict__[name] = value
40  return
41  method = class_type.__swig_setmethods__.get(name,None)
42  if method: return method(self,value)
43  if (not static):
44  self.__dict__[name] = value
45  else:
46  raise AttributeError("You cannot add attributes to %s" % self)
47 
48 def _swig_setattr(self,class_type,name,value):
49  return _swig_setattr_nondynamic(self,class_type,name,value,0)
50 
51 def _swig_getattr(self,class_type,name):
52  if (name == "thisown"): return self.this.own()
53  method = class_type.__swig_getmethods__.get(name,None)
54  if method: return method(self)
55  raise AttributeError(name)
56 
57 def _swig_repr(self):
58  try: strthis = "proxy of " + self.this.__repr__()
59  except: strthis = ""
60  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
61 
62 try:
63  _object = object
64  _newclass = 1
65 except AttributeError:
66  class _object : pass
67  _newclass = 0
68 
69 
70 try:
71  import weakref
72  weakref_proxy = weakref.proxy
73 except:
74  weakref_proxy = lambda x: x
75 
76 
77 class IMP_ROTAMER_SwigPyIterator(_object):
78  """Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class"""
79  __swig_setmethods__ = {}
80  __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_ROTAMER_SwigPyIterator, name, value)
81  __swig_getmethods__ = {}
82  __getattr__ = lambda self, name: _swig_getattr(self, IMP_ROTAMER_SwigPyIterator, name)
83  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
84  __repr__ = _swig_repr
85  __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator
86  __del__ = lambda self : None;
87  def value(self):
88  """value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
89  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)
90 
91  def incr(self, n=1):
92  """
93  incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
94  incr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
95  """
96  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)
97 
98  def decr(self, n=1):
99  """
100  decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
101  decr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
102  """
103  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)
104 
105  def distance(self, *args):
106  """distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
107  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, *args)
108 
109  def equal(self, *args):
110  """equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
111  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, *args)
112 
113  def copy(self):
114  """copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
115  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)
116 
117  def next(self):
118  """next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
119  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)
120 
121  def __next__(self):
122  """__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
123  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)
124 
125  def previous(self):
126  """previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
127  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)
128 
129  def advance(self, *args):
130  """advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
131  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, *args)
132 
133  def __eq__(self, *args):
134  """__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
135  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, *args)
136 
137  def __ne__(self, *args):
138  """__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
139  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, *args)
140 
141  def __iadd__(self, *args):
142  """__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
143  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, *args)
144 
145  def __isub__(self, *args):
146  """__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
147  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, *args)
148 
149  def __add__(self, *args):
150  """__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
151  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, *args)
152 
153  def __sub__(self, *args):
154  """
155  __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
156  __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
157  """
158  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
159 
160  def __iter__(self): return self
161 IMP_ROTAMER_SwigPyIterator_swigregister = _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister
162 IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)
163 
164 _value_types=[]
165 _object_types=[]
166 _raii_types=[]
167 _plural_types=[]
168 
169 IMP_HAS_DEPRECATED = _IMP_rotamer.IMP_HAS_DEPRECATED
170 IMP_DEBUG = _IMP_rotamer.IMP_DEBUG
171 IMP_RELEASE = _IMP_rotamer.IMP_RELEASE
172 IMP_SILENT = _IMP_rotamer.IMP_SILENT
173 IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS
174 IMP_TERSE = _IMP_rotamer.IMP_TERSE
175 IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE
176 IMP_NONE = _IMP_rotamer.IMP_NONE
177 IMP_USAGE = _IMP_rotamer.IMP_USAGE
178 IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL
179 IMP_COMPILER_HAS_AUTO = _IMP_rotamer.IMP_COMPILER_HAS_AUTO
180 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR
181 IMP_COMPILER_HAS_NULLPTR = _IMP_rotamer.IMP_COMPILER_HAS_NULLPTR
182 IMP_BASE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_BASE_HAS_BOOST_RANDOM
183 IMP_BASE_HAS_GPERFTOOLS = _IMP_rotamer.IMP_BASE_HAS_GPERFTOOLS
184 IMP_BASE_HAS_LOG4CXX = _IMP_rotamer.IMP_BASE_HAS_LOG4CXX
185 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
186 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
187 import sys
188 class _DirectorObjects(object):
189  """@internal Simple class to keep references to director objects
190  to prevent premature deletion."""
191  def __init__(self):
192  self._objects = []
193  def register(self, obj):
194  """Take a reference to a director object; will only work for
195  refcounted C++ classes"""
196  if hasattr(obj, 'get_ref_count'):
197  self._objects.append(obj)
198  def cleanup(self):
199  """Only drop our reference and allow cleanup by Python if no other
200  Python references exist (we hold 3 references: one in self._objects,
201  one in x, and one in the argument list for getrefcount) *and* no
202  other C++ references exist (the Python object always holds one)"""
203  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
204  or x.get_ref_count() > 1]
205 
206 
207  self._objects = objs
208  def get_object_count(self):
209  """Get number of director objects (useful for testing only)"""
210  return len(self._objects)
211 _director_objects = _DirectorObjects()
212 
213 DEFAULT_CHECK = _IMP_rotamer.DEFAULT_CHECK
214 NONE = _IMP_rotamer.NONE
215 USAGE = _IMP_rotamer.USAGE
216 USAGE_AND_INTERNAL = _IMP_rotamer.USAGE_AND_INTERNAL
217 
218 def set_check_level(*args):
219  """set_check_level(IMP::base::CheckLevel tf)"""
220  return _IMP_rotamer.set_check_level(*args)
221 
222 def get_check_level():
223  """get_check_level() -> IMP::base::CheckLevel"""
224  return _IMP_rotamer.get_check_level()
225 class _ostream(_object):
226  """Proxy of C++ std::ostream class"""
227  __swig_setmethods__ = {}
228  __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
229  __swig_getmethods__ = {}
230  __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
231  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
232  __repr__ = _swig_repr
233  def write(self, *args):
234  """write(_ostream self, char const * osa_buf)"""
235  return _IMP_rotamer._ostream_write(self, *args)
236 
237 _ostream_swigregister = _IMP_rotamer._ostream_swigregister
238 _ostream_swigregister(_ostream)
239 
240 IMP_COMPILER_HAS_OVERRIDE = _IMP_rotamer.IMP_COMPILER_HAS_OVERRIDE
241 IMP_COMPILER_HAS_FINAL = _IMP_rotamer.IMP_COMPILER_HAS_FINAL
242 import IMP.base
243 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM
244 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
245 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM
246 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM
247 import IMP.cgal
248 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL
249 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
250 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
251 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM
252 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
253 IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL
254 IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN
255 import IMP.algebra
256 IMP_KERNEL_HAS_IMP_CGAL = _IMP_rotamer.IMP_KERNEL_HAS_IMP_CGAL
257 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
258 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM
259 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_SYSTEM
260 IMP_KERNEL_HAS_CGAL = _IMP_rotamer.IMP_KERNEL_HAS_CGAL
261 import IMP.kernel
262 IMP_DISPLAY_HAS_IMP_BASE = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_BASE
263 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL
264 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
265 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
266 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM
267 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM
268 IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL
269 import IMP.display
270 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
271 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
272 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
273 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
274 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
275 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL
276 import IMP.score_functor
277 IMP_CORE_HAS_IMP_BASE = _IMP_rotamer.IMP_CORE_HAS_IMP_BASE
278 IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL
279 IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL
280 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM
281 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
282 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM
283 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM
284 IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL
285 import IMP.core
286 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA
287 IMP_CONTAINER_HAS_IMP_BASE = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_BASE
288 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL
289 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY
290 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL
291 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
292 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
293 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
294 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM
295 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM
296 IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL
297 import IMP.container
298 IMP_ATOM_HAS_IMP_BASE = _IMP_rotamer.IMP_ATOM_HAS_IMP_BASE
299 IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL
300 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL
301 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
302 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
303 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM
304 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX
305 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM
306 IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL
307 IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX
308 IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX
309 IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX
310 import IMP.atom
311 IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA
312 IMP_ROTAMER_HAS_IMP_BASE = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_BASE
313 IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL
314 IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER
315 IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY
316 IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL
317 IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR
318 IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM
319 IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS
320 IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM
321 IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX
322 IMP_ROTAMER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM
323 IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL
324 RotamerAngleTuples=list
325 _plural_types.append("RotamerAngleTuples")
326 _value_types.append("RotamerAngleTuple")
327 
328 ResidueRotamers=list
329 _plural_types.append("ResidueRotamers")
330 _value_types.append("ResidueRotamer")
331 
332 _object_types.append("RotamerLibrary")
333 
334 
335 def _object_cast_to_RotamerLibrary(*args):
336  """_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
337  return _IMP_rotamer._object_cast_to_RotamerLibrary(*args)
338 _object_types.append("RotamerCalculator")
339 
340 
341 def _object_cast_to_RotamerCalculator(*args):
342  """_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
343  return _IMP_rotamer._object_cast_to_RotamerCalculator(*args)
344 class RotamerAngleTuple(_object):
345  """Proxy of C++ IMP::rotamer::RotamerAngleTuple class"""
346  __swig_setmethods__ = {}
347  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerAngleTuple, name, value)
348  __swig_getmethods__ = {}
349  __getattr__ = lambda self, name: _swig_getattr(self, RotamerAngleTuple, name)
350  def __init__(self, *args):
351  """
352  __init__(IMP::rotamer::RotamerAngleTuple self) -> RotamerAngleTuple
353  __init__(IMP::rotamer::RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
354  """
355  this = _IMP_rotamer.new_RotamerAngleTuple(*args)
356  try: self.this.append(this)
357  except: self.this = this
358  def get_chi1(self):
359  """get_chi1(RotamerAngleTuple self) -> float"""
360  return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)
361 
362  def get_chi2(self):
363  """get_chi2(RotamerAngleTuple self) -> float"""
364  return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)
365 
366  def get_chi3(self):
367  """get_chi3(RotamerAngleTuple self) -> float"""
368  return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)
369 
370  def get_chi4(self):
371  """get_chi4(RotamerAngleTuple self) -> float"""
372  return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)
373 
374  def get_probability(self):
375  """get_probability(RotamerAngleTuple self) -> float"""
376  return _IMP_rotamer.RotamerAngleTuple_get_probability(self)
377 
378  def show(self, *args):
379  """
380  show(RotamerAngleTuple self, _ostream out=std::cout)
381  show(RotamerAngleTuple self)
382  """
383  return _IMP_rotamer.RotamerAngleTuple_show(self, *args)
384 
385  def __str__(self):
386  """__str__(RotamerAngleTuple self) -> std::string"""
387  return _IMP_rotamer.RotamerAngleTuple___str__(self)
388 
389  def __repr__(self):
390  """__repr__(RotamerAngleTuple self) -> std::string"""
391  return _IMP_rotamer.RotamerAngleTuple___repr__(self)
392 
393  __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple
394  __del__ = lambda self : None;
395 RotamerAngleTuple_swigregister = _IMP_rotamer.RotamerAngleTuple_swigregister
396 RotamerAngleTuple_swigregister(RotamerAngleTuple)
397 
398 class RotamerLibrary(IMP.base.Object):
399  """Proxy of C++ IMP::rotamer::RotamerLibrary class"""
400  __swig_setmethods__ = {}
401  for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
402  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerLibrary, name, value)
403  __swig_getmethods__ = {}
404  for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
405  __getattr__ = lambda self, name: _swig_getattr(self, RotamerLibrary, name)
406  def __init__(self, angle_step=10):
407  """
408  __init__(IMP::rotamer::RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary
409  __init__(IMP::rotamer::RotamerLibrary self) -> RotamerLibrary
410  """
411  this = _IMP_rotamer.new_RotamerLibrary(angle_step)
412  try: self.this.append(this)
413  except: self.this = this
414  def get_rotamers(self, *args):
415  """get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
416  return _IMP_rotamer.RotamerLibrary_get_rotamers(self, *args)
417 
418  def read_library_file(self, *args):
419  """read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
420  return _IMP_rotamer.RotamerLibrary_read_library_file(self, *args)
421 
422  def get_version_info(self):
423  """get_version_info(RotamerLibrary self) -> VersionInfo"""
424  return _IMP_rotamer.RotamerLibrary_get_version_info(self)
425 
426  __swig_destroy__ = _IMP_rotamer.delete_RotamerLibrary
427  __del__ = lambda self : None;
428  def __str__(self):
429  """__str__(RotamerLibrary self) -> std::string"""
430  return _IMP_rotamer.RotamerLibrary___str__(self)
431 
432  def __repr__(self):
433  """__repr__(RotamerLibrary self) -> std::string"""
434  return _IMP_rotamer.RotamerLibrary___repr__(self)
435 
436  def get_from(o):
437  return _object_cast_to_RotamerLibrary(o)
438  get_from = staticmethod(get_from)
439 
440 RotamerLibrary_swigregister = _IMP_rotamer.RotamerLibrary_swigregister
441 RotamerLibrary_swigregister(RotamerLibrary)
442 
443 class ResidueRotamer(_object):
444  """Proxy of C++ IMP::rotamer::ResidueRotamer class"""
445  __swig_setmethods__ = {}
446  __setattr__ = lambda self, name, value: _swig_setattr(self, ResidueRotamer, name, value)
447  __swig_getmethods__ = {}
448  __getattr__ = lambda self, name: _swig_getattr(self, ResidueRotamer, name)
449  def __init__(self, *args):
450  """
451  __init__(IMP::rotamer::ResidueRotamer self, ResidueType rt=UNK) -> ResidueRotamer
452  __init__(IMP::rotamer::ResidueRotamer self) -> ResidueRotamer
453  """
454  this = _IMP_rotamer.new_ResidueRotamer(*args)
455  try: self.this.append(this)
456  except: self.this = this
457  def get_coordinates(self, *args):
458  """get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
459  return _IMP_rotamer.ResidueRotamer_get_coordinates(self, *args)
460 
461  def get_number_of_cases(self, *args):
462  """get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
463  return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, *args)
464 
465  def get_atom_exists(self, *args):
466  """get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
467  return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, *args)
468 
469  def get_size(self):
470  """get_size(ResidueRotamer self) -> unsigned int"""
471  return _IMP_rotamer.ResidueRotamer_get_size(self)
472 
473  def get_probability(self, *args):
474  """get_probability(ResidueRotamer self, unsigned int index) -> double"""
475  return _IMP_rotamer.ResidueRotamer_get_probability(self, *args)
476 
477  def show(self, *args):
478  """
479  show(ResidueRotamer self, _ostream out=std::cout)
480  show(ResidueRotamer self)
481  """
482  return _IMP_rotamer.ResidueRotamer_show(self, *args)
483 
484  def __str__(self):
485  """__str__(ResidueRotamer self) -> std::string"""
486  return _IMP_rotamer.ResidueRotamer___str__(self)
487 
488  def __repr__(self):
489  """__repr__(ResidueRotamer self) -> std::string"""
490  return _IMP_rotamer.ResidueRotamer___repr__(self)
491 
492  __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer
493  __del__ = lambda self : None;
494 ResidueRotamer_swigregister = _IMP_rotamer.ResidueRotamer_swigregister
495 ResidueRotamer_swigregister(ResidueRotamer)
496 
497 class RotamerCalculator(IMP.base.Object):
498  """Proxy of C++ IMP::rotamer::RotamerCalculator class"""
499  __swig_setmethods__ = {}
500  for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
501  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerCalculator, name, value)
502  __swig_getmethods__ = {}
503  for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
504  __getattr__ = lambda self, name: _swig_getattr(self, RotamerCalculator, name)
505  def __init__(self, *args):
506  """__init__(IMP::rotamer::RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
507  this = _IMP_rotamer.new_RotamerCalculator(*args)
508  try: self.this.append(this)
509  except: self.this = this
510  def get_rotamer(self, *args):
511  """get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
512  return _IMP_rotamer.RotamerCalculator_get_rotamer(self, *args)
513 
514  def get_version_info(self):
515  """get_version_info(RotamerCalculator self) -> VersionInfo"""
516  return _IMP_rotamer.RotamerCalculator_get_version_info(self)
517 
518  __swig_destroy__ = _IMP_rotamer.delete_RotamerCalculator
519  __del__ = lambda self : None;
520  def transform(self, *args):
521  """transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
522  return _IMP_rotamer.RotamerCalculator_transform(self, *args)
523 
524  def __str__(self):
525  """__str__(RotamerCalculator self) -> std::string"""
526  return _IMP_rotamer.RotamerCalculator___str__(self)
527 
528  def __repr__(self):
529  """__repr__(RotamerCalculator self) -> std::string"""
530  return _IMP_rotamer.RotamerCalculator___repr__(self)
531 
532  def get_from(o):
533  return _object_cast_to_RotamerCalculator(o)
534  get_from = staticmethod(get_from)
535 
536 RotamerCalculator_swigregister = _IMP_rotamer.RotamerCalculator_swigregister
537 RotamerCalculator_swigregister(RotamerCalculator)
538 
539 
540 def get_module_version():
541  """get_module_version() -> std::string const"""
542  return _IMP_rotamer.get_module_version()
543 
544 def get_example_path(*args):
545  """get_example_path(std::string fname) -> std::string"""
546  return _IMP_rotamer.get_example_path(*args)
547 
548 def get_data_path(*args):
549  """get_data_path(std::string fname) -> std::string"""
550  return _IMP_rotamer.get_data_path(*args)
551 import _version_check
552 _version_check.check_version(get_module_version())
553 
554 # This file is compatible with both classic and new-style classes.
555 
556