Go to the source code of this file.
Data Structures | |
| class | IMP::atom::Hierarchies |
| class | IMP::atom::HierarchiesTemp |
| class | IMP::atom::Hierarchy |
| The standard decorator for manipulating molecular structures. More... | |
Namespaces | |
| namespace | IMP |
The IMP kernel provides base classes and key shared functionality. | |
| namespace | IMP::atom |
| This module contains functionality for dealing with atoms and proteins. | |
Defines | |
| #define | IMP_CAPS_NAME(UCName, lcname, CAPSNAME) CAPSNAME, |
| #define | IMP_FOREACH_HIERARCHY_TYPE(macro) |
| Do an operation for each of the hierarchy types. | |
| #define | IMP_GET_AS_DECL(UCName, lcname, CAPSNAME) UCName get_as_##lcname() const; |
| #define | IMP_GET_AS_DEF(UCName, lcname, CAPSNAME) |
Enumerations | |
| enum | GetByType { ATOM_TYPE, RESIDUE_TYPE, CHAIN_TYPE, DOMAIN_TYPE, FRAGMENT_TYPE, XYZ_TYPE, XYZR_TYPE, MASS_TYPE } |
Functions | |
| Hierarchy | IMP::atom::create_clone (Hierarchy d) |
| Clone the Hierarchy. | |
| Hierarchy | IMP::atom::create_clone_one (Hierarchy d) |
| Clone the node in the Hierarchy. | |
| Hierarchy | IMP::atom::create_fragment (const HierarchiesTemp &ps) |
| Create a fragment containing the specified nodes. | |
| void | IMP::atom::destroy (Hierarchy d) |
| Delete the Hierarchy. | |
| algebra::BoundingBoxD< 3 > | IMP::atom::get_bounding_box (const Hierarchy &h) |
| Get a bounding box for the Hierarchy. | |
| algebra::SphereD< 3 > | IMP::atom::get_bounding_sphere (const Hierarchy &h) |
| HierarchiesTemp | IMP::atom::get_by_type (Hierarchy mhd, GetByType t) |
| Bonds | IMP::atom::get_internal_bonds (Hierarchy mhd) |
| Get the bonds internal to this tree. | |
| bool | IMP::atom::get_is_heterogen (Hierarchy h) |
| Return true if the piece of hierarchy should be classified as a heterogen. | |
| HierarchiesTemp | IMP::atom::get_leaves (Hierarchy h) |
| Hierarchy | IMP::atom::get_residue (Hierarchy mhd, unsigned int index) |
| Get the residue with the specified index. | |
| Hierarchy | IMP::atom::get_root (Hierarchy h) |
| Return the root of the hierarchy. | |
| IMP::core::RigidBody | IMP::atom::setup_as_rigid_body (Hierarchy h) |
| Rigidify a molecule or collection of molecules. | |
| void | IMP::atom::show (Hierarchy h, std::ostream &out=std::cout) |
| Print out a molecular hierarchy. | |
Copyright 2007-2010 IMP Inventors. All rights reserved.
