home
about
news
download
doc
source
systems
tests
bugs
contact
IMP Reference Guide
develop.63b38c487d,2024/12/22
The Integrative Modeling Platform
IMP Manual
Reference Guide
Tutorial Index
Modules
Classes
Examples
include
IMP
isd
version 20241222.develop.63b38c487d
vonMisesKappaJeffreysRestraint.h
Go to the documentation of this file.
1
/**
2
* \file IMP/isd/vonMisesKappaJeffreysRestraint.h
3
* \brief Jeffreys prior for \f$\kappa\f$ in the von Mises distribution.
4
*
5
* Copyright 2007-2022 IMP Inventors. All rights reserved.
6
*
7
*/
8
9
#ifndef IMPISD_VON_MISES_KAPPA_JEFFREYS_RESTRAINT_H
10
#define IMPISD_VON_MISES_KAPPA_JEFFREYS_RESTRAINT_H
11
12
#include <IMP/isd/isd_config.h>
13
#include <
IMP/SingletonScore.h
>
14
#include <
IMP/Restraint.h
>
15
16
IMPISD_BEGIN_NAMESPACE
17
18
//! Jeffreys prior for the \f$\kappa\f$ concentration parameter of a von Mises distribution.
19
/** \f[p(\kappa) = \sqrt{\frac{I_1(\kappa)}{I_0(\kappa)}
20
* \left[
21
* \kappa
22
* -\frac{I_1(\kappa)}{I_0(\kappa)}
23
* -\kappa\left(\frac{I_1(\kappa)}{I_0(\kappa)}\right)^2
24
* \right]}\f]
25
*/
26
27
class
IMPISDEXPORT
vonMisesKappaJeffreysRestraint
:
public
Restraint
{
28
Pointer<Particle>
kappa_;
29
double
old_kappaval;
30
double
I0_, I1_;
31
32
public
:
33
//! Create the restraint.
34
vonMisesKappaJeffreysRestraint
(
Model
*m,
Particle
*kappa);
35
36
virtual
double
unprotected_evaluate
(
IMP::DerivativeAccumulator
*accum)
37
const override
;
38
virtual
IMP::ModelObjectsTemp
do_get_inputs
()
const override
;
39
IMP_OBJECT_METHODS
(
vonMisesKappaJeffreysRestraint
);
40
41
virtual
double
get_probability()
const
;
42
43
private
:
44
void
update_bessel(
double
kappaval);
// update memoized bessel values
45
};
46
47
IMPISD_END_NAMESPACE
48
49
#endif
/* IMPISD_VON_MISES_KAPPA_JEFFREYS_RESTRAINT_H */
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
object_macros.h:25
IMP::Restraint::unprotected_evaluate
virtual double unprotected_evaluate(DerivativeAccumulator *da) const
Return the unweighted score for the restraint.
IMP::Vector
A more IMP-like version of the std::vector.
Definition:
Vector.h:50
IMP::Pointer
A smart pointer to a reference counted object.
Definition:
Pointer.h:87
IMP::Model
Class for storing model, its restraints, constraints, and particles.
Definition:
Model.h:86
IMP::isd::vonMisesKappaJeffreysRestraint
Jeffreys prior for the concentration parameter of a von Mises distribution.
Definition:
vonMisesKappaJeffreysRestraint.h:27
SingletonScore.h
Define SingletonScore.
IMP::Particle
Class to handle individual particles of a Model object.
Definition:
Particle.h:43
Restraint.h
Abstract base class for all restraints.
IMP::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::DerivativeAccumulator
Class for adding derivatives from restraints to the model.
Definition:
DerivativeAccumulator.h:24
IMP::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition:
Restraint.h:56