IMP Reference Guide
develop.f6c15b4169,2024/11/06
The Integrative Modeling Platform

Functions to analyze spatiotemporal models. More...
Functions to analyze spatiotemporal models.
Functions  
def  precision 
Function that reads in one labeled_pdf from create_DAG and returns the precision, defined as the sum of the squared probability of all trajectories. More...  
def  temporal_precision 
Function that reads in two labeled_pdfs from create_DAG and returns the temporal_precision, defined as the probability overlap between two pathway models. More...  
def IMP.spatiotemporal.analysis.precision  (  labeled_pdf_fn,  
output_fn = 'precision.txt' 

) 
Function that reads in one labeled_pdf from create_DAG and returns the precision, defined as the sum of the squared probability of all trajectories.
labeled_pdf_fn  string, labeled pdf file name (including the path); labeled_pdf from the total model 
output_fn  string, name of output file (default: 'temporal_precision.txt') 
Definition at line 81 of file spatiotemporal/Analysis.py.
def IMP.spatiotemporal.analysis.temporal_precision  (  labeled_pdf1_fn,  
labeled_pdf2_fn,  
output_fn = 'temporal_precision.txt' 

) 
Function that reads in two labeled_pdfs from create_DAG and returns the temporal_precision, defined as the probability overlap between two pathway models.
labeled_pdf1_fn  string, labeled pdf file name (including the path); labeled_pdf from one independent sampling 
labeled_pdf2_fn  string, labeled pdf file name (including the path); labeled_pdf from another independent sampling 
output_fn  string, name of output file (default: 'temporal_precision.txt') 
Definition at line 17 of file spatiotemporal/Analysis.py.