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IMP Reference Guide  develop.a3ebfe92e8,2023/01/27
The Integrative Modeling Platform
IMP.pmi1.restraints.npc Namespace Reference

Specialized restraints for modeling the Nuclear Pore Complex. More...

Detailed Description

Specialized restraints for modeling the Nuclear Pore Complex.

These restraints have been used to model the Nuclear Pore Complex (NPC) but may be useful for other applications too. They model the NPC as lying in the xy plane, centered at the origin. (Transport through the pore corresponds to movement along the z axis.) The surface of the nuclear membrane is represented as the surface of a half torus, also lying in the xy plane and centered at the origin. Individual proteins (or parts of proteins, such as the N- or C- termini) are then localized to different regions of the complex (e.g. near the membrane or pore, or on the nuclear or cytoplasmic side) by simple restraints on ther Cartesian coordinates.

Classes

class  MembraneExclusionRestraint
 Create Membrane Exclusion Restraint. More...
 
class  MembraneSurfaceLocationConditionalRestraint
 Create Membrane Surface Location CONDITIONAL Restraint for Nup120 ALPS Motifs - Mutually Exclusive from (135,152,'Nup120') and (197,216,'Nup120'). More...
 
class  MembraneSurfaceLocationRestraint
 Create Membrane Surface Location Restraint. More...
 
class  XYRadialPositionLowerRestraint
 Create XYRadial Position Lower restraints. More...
 
class  XYRadialPositionRestraint
 Create XYRadial Position Restraint. More...
 
class  XYRadialPositionUpperRestraint
 Create XYRadial Position Upper restraints. More...
 
class  YAxialPositionLowerRestraint
 Create Y-Axial Position Lower restraints. More...
 
class  YAxialPositionRestraint
 Create Y-Axial Position restraints. More...
 
class  YAxialPositionUpperRestraint
 Create Y-Axial Position Upper restraints. More...
 
class  ZAxialPositionLowerRestraint
 Create Z-Axial Position Lower restraints. More...
 
class  ZAxialPositionRestraint
 Create Z-Axial Position restraints. More...
 
class  ZAxialPositionUpperRestraint
 Create Z-Axial Position Upper restraints. More...