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IMP Reference Guide
develop.63b38c487d,2024/12/22
The Integrative Modeling Platform
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Utility functions to handle IO. More...
Utility functions to handle IO.
Classes | |
| class | ReferenceFrameToText |
| Transform a IMP reference frame into parseable output. More... | |
| class | Transformation3DToText |
| Parseable output for a IMP Transformation3D. More... | |
Functions | |
| def | get_particles_from_points |
| Simply creates IMP particles from a set of 2D points model - is the model to store the particles. More... | |
| def | imp_info |
| Returns text with the time and information about the modules employed imp_modules is the set of modules whose infos are requested. More... | |
| def | read_reference_frames |
| Read the reference frames contained in a solutions file from sampling n is the maximum number of ref frames to read. More... | |
| def | read_transforms |
| Read a file of IMP.algebra.Transformation3D. More... | |
| def | write_particles_as_text |
| Writes a set of particles with coordinates to a file. More... | |
| def | write_pdb_for_reference_frames |
| Read the PDB files, apply reference frames to them, and write a pdb. More... | |
| def | write_transforms |
| Write a file with the Transformation3Ds contained in Ts. More... | |
| def | write_vectors_in_multifit2_format |
| writes a text files in the format required for point alignment in multifit2 More... | |
| def IMP.EMageFit.imp_general.io.get_particles_from_points | ( | points, | |
| model | |||
| ) |
| def IMP.EMageFit.imp_general.io.imp_info | ( | imp_modules = None | ) |
| def IMP.EMageFit.imp_general.io.read_reference_frames | ( | fn, | |
n = 10 |
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| ) |
Read the reference frames contained in a solutions file from sampling n is the maximum number of ref frames to read.
NOTE: Currently the function returns only the reference frames and discards the score, the first element of a row
| def IMP.EMageFit.imp_general.io.read_transforms | ( | fn, | |
n = False |
|||
| ) |
Read a file of IMP.algebra.Transformation3D.
The it is assumed that the transformations are the only thing contained in a line
| def IMP.EMageFit.imp_general.io.write_particles_as_text | ( | leaves, | |
| fn_output | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_pdb_for_reference_frames | ( | fn_pdbs, | |
| refs_texts, | |||
| fn_output | |||
| ) |
| def IMP.EMageFit.imp_general.io.write_transforms | ( | Ts, | |
| fn | |||
| ) |