IMP.EMageFit.database Namespace Reference

Utility functions to manage SQL databases with sqlite3. More...

Detailed Description

Utility functions to manage SQL databases with sqlite3.

Classes
class	Database2
	Class to manage a SQL database built with sqlite3. More...

Functions
def	get_sorting_indices
	Return indices that sort the list ls. More...
def	merge_databases
	Reads a table from a set of database files into a single file Makes sure to reorder all column names if necessary before merging. More...
def	print_data
	Prints the data recovered from a database. More...
def	write_data
	writes data to a file. More...

Function Documentation

def IMP.EMageFit.database.get_sorting_indices

(

ls

)

Return indices that sort the list ls.

Note

This function is only available in Python.

Definition at line 357 of file database.py.

def IMP.EMageFit.database.merge_databases	(		fns,
			fn_output,
			tbl
	)

Reads a table from a set of database files into a single file Makes sure to reorder all column names if necessary before merging.

Note

This function is only available in Python.

Definition at line 364 of file database.py.

def IMP.EMageFit.database.print_data	(		data,
			delimiter = ' '
	)

Prints the data recovered from a database.

Note

This function is only available in Python.

Definition at line 316 of file database.py.

def IMP.EMageFit.database.write_data	(		data,
			output_file,
			delimiter = ' '
	)

writes data to a file.

The output file is expected to be a python file object

Note

This function is only available in Python.

Definition at line 323 of file database.py.