Normal distribution of Function.
Jeffreys prior for in the von Mises distribution.
A restraint on a scale parameter.
Normal distribution of Function.
Normal distribution of Function.
Normal distribution of Function.
A Penalized Complexity prior on sigma of a normal distribution.
A pmf based likelihood function with prior knowledge on the false positive rate.
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...
A lognormal restraint that uses the ISPA model to model HBond-derived distance fit.
An implementation of the d-norm to make an ambiguous restraint.
Common scoring functions.
A decorator for switching parameters particles.
A decorator for scale parameters particles.
A modifier which perturbs XYZs or Nuisances with a constant energy MD simulation. ...
Restrain a selection of particles (eg. a residue or segment) to be within a certain distance of a sec...
A pmf based likelihood function with prior knowledge on the false positive rate.
Simple molecular dynamics optimizer.
A decorator for nuisance parameters particles.
Classes for general functions.
Normal distribution of Function.
Normal distribution of Function.
Normal distribution of Function.
A hybrid monte carlo implementation.
Penalized complexity prior.
A mover that perturbs a Weight particle.
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...
A sigmoid shaped restraint between residues with discrete classifier and ambiguous assignment...
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...
Base class for probability distributions.
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...
Add weights constrained to the unit simplex to a particle.
FRET_R restraint to use in vivo FRET data.
Restrain two sets of Gaussians (model and GMM derived from EM map)
A restraint on a scale parameter.
Restraint between two sets of anchor points "model" and "EM density".
A sigmoid shaped restraint between residues with discrete classifier and ambiguous assignment...
TALOS dihedral restraint between four particles.
Restraint and ScoreState for GaussianProcessInterpolation.
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...
A simple quadric repulsive term between two atoms. Restraint is zero when the distance equals the sum...
Joint Student's t-distribution of Function.
Auxiliary class useful for FRET_R restraint.
Calculate the -Log of a list of restraints.
Classes for general functions.
A Student-t distribution restraint.
Conjugate prior for in the von Mises distribution.
