- e -

• Em2DRestraint() : IMP::em2d::Em2DRestraint
• EM2DRestraint() : IMP::spb::EM2DRestraint
• empty() : IMP::bff::DecayCurve
• enable_all_movers() : IMP.pmi.dof.DegreesOfFreedom
• EnvelopeFitRestraint() : IMP::em::EnvelopeFitRestraint
• EnvelopePenetrationRestraint() : IMP::em::EnvelopePenetrationRestraint
• estimate_cv_constant() : IMP.isd.TuneRex.CvEstimator
• estimate_cv_interpolate() : IMP.isd.TuneRex.CvEstimator
• estimate_cv_mbar() : IMP.isd.TuneRex.CvEstimator
• evaluate() : IMP::core::ClosedCubicSpline , IMP::core::Cosine , IMP::core::Harmonic , IMP::core::HarmonicLowerBound , IMP::core::HarmonicUpperBound , IMP::core::HarmonicWell , IMP::core::Linear , IMP::core::SurfaceTetheredChain , IMP::core::TruncatedHarmonic< DIRECTION > , IMP::core::WeightedSum , IMP::core::WeightedSumOfExponential , IMP::em::CoarseCCatIntervals , IMP::example::ExampleUnaryFunction , IMP::isd::MultivariateFNormalSufficient , IMP::isd::OneDimensionalDistribution , IMP::isd::OneDimensionalSufficientDistribution , IMP::misc::FreelyJointedChain , IMP::misc::WormLikeChain , IMP::Restraint , IMP::score_functor::ScoreUnaryFunction< Score, D > , IMP::ScoringFunction , IMP::spb::Gaussian , IMP::UnaryFunction
• evaluate_derivative_alpha() : IMP::isd::PenalizedComplexityPrior
• evaluate_derivative_Dxi() : IMP::isd::PenalizedComplexityPrior
• evaluate_derivative_factor() : IMP::isd::MultivariateFNormalSufficient
• evaluate_derivative_FM() : IMP::isd::FStudentT , IMP::isd::MultivariateFNormalSufficient
• evaluate_derivative_Fx() : IMP::isd::FStudentT
• evaluate_derivative_FX() : IMP::isd::FStudentT
• evaluate_derivative_Jxi() : IMP::isd::PenalizedComplexityPrior
• evaluate_derivative_LogJX() : IMP::isd::FStudentT
• evaluate_derivative_nu() : IMP::isd::FStudentT
• evaluate_derivative_sigma() : IMP::isd::FStudentT
• evaluate_derivative_Sigma() : IMP::isd::MultivariateFNormalSufficient
• evaluate_derivative_xi() : IMP::isd::PenalizedComplexityPrior
• evaluate_for_contributions() : IMP::isd::AtomicCrossLinkMSRestraint , IMP::isd::ResidueProteinProximityRestraint
• evaluate_if_below() : IMP::Restraint
• evaluate_if_good() : IMP::Restraint
• evaluate_if_good_index() : IMP::core::ClosePairsPairScore , IMP::core::KClosePairsPairScore , IMP::PairScore , IMP::QuadScore , IMP::SingletonScore , IMP::TripletScore
• evaluate_if_good_indexes() : IMP::atom::AngleSingletonScore , IMP::atom::BondSingletonScore , IMP::atom::CoulombPairScore , IMP::atom::DihedralSingletonScore , IMP::atom::ImproperSingletonScore , IMP::atom::LennardJonesPairScore , IMP::container::MinimumPairScore , IMP::container::MinimumQuadScore , IMP::container::MinimumSingletonScore , IMP::container::MinimumTripletScore , IMP::core::AngleTripletScore , IMP::core::ClosePairsPairScore , IMP::core::GenericAttributeSingletonScore< UF > , IMP::core::GenericBoundingBox3DSingletonScore< UF > , IMP::core::GenericBoundingSphere3DSingletonScore< UF > , IMP::core::GenericDistanceToSingletonScore< UF > , IMP::core::HarmonicUpperBoundSphereDiameterPairScore , IMP::core::KClosePairsPairScore , IMP::core::NormalizedSphereDistancePairScore , IMP::core::PredicateSingletonScore< Predicate, Score > , IMP::core::RefinedPairsPairScore , IMP::core::RigidBodyAnglePairScore , IMP::core::SphereDistanceToSingletonScore , IMP::core::TransformedDistancePairScore , IMP::core::TypedPairScore , IMP::core::WeightedSphereDistancePairScore , IMP::example::ExamplePairScore , IMP::isd::RepulsiveDistancePairScore , IMP::misc::LowestRefinedPairScore , IMP::misc::SoftCylinderPairScore , IMP::npc::MinimumSphereDistancePairScore , IMP::npc::SlabWithSphericalIndentMBMScore , IMP::npc::SlabWithToroidalPoreGoPairScore , IMP::npc::SlabWithToroidalPoreMBMScore , IMP::npc::SphericalIndentSurfaceDepthPairScore , IMP::npc::ToroidalPoreSurfaceDepthPairScore , IMP::npctransport::AnchorToCylidnricalPorePairScore , IMP::npctransport::ExcludeZRangeSingletonScore , IMP::npctransport::HarmonicSpringSingletonScore , IMP::npctransport::HarmonicWellPairScore , IMP::npctransport::LinearSoftSpherePairScore , IMP::npctransport::LinearWellPairScore , IMP::npctransport::SitesPairScore , IMP::npctransport::SlabWithCylindricalPorePairScore , IMP::npctransport::SlabWithToroidalPorePairScore , IMP::npctransport::ZBiasSingletonScore , IMP::PairScore , IMP::QuadScore , IMP::score_functor::DistancePairScore< DistanceScoreT > , IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT > , IMP::SingletonScore , IMP::spb::AttributeDistancePairScore , IMP::spb::KinkPairScore , IMP::spb::RigidBodyPackingScore , IMP::spb::TiltSingletonScore , IMP::TripletScore
• evaluate_index() : IMP::atom::AngleSingletonScore , IMP::atom::BondSingletonScore , IMP::atom::CoulombPairScore , IMP::atom::DihedralSingletonScore , IMP::atom::ImproperSingletonScore , IMP::atom::LennardJonesPairScore , IMP::container::MinimumPairScore , IMP::container::MinimumQuadScore , IMP::container::MinimumSingletonScore , IMP::container::MinimumTripletScore , IMP::core::AngleTripletScore , IMP::core::ClosePairsPairScore , IMP::core::DistancePairScore , IMP::core::GenericAttributeSingletonScore< UF > , IMP::core::GenericBoundingBox3DSingletonScore< UF > , IMP::core::GenericBoundingSphere3DSingletonScore< UF > , IMP::core::GenericDistanceToSingletonScore< UF > , IMP::core::HarmonicDistancePairScore , IMP::core::HarmonicSphereDistancePairScore , IMP::core::HarmonicSurfaceDepthPairScore , IMP::core::HarmonicSurfaceDistancePairScore , IMP::core::HarmonicSurfaceHeightPairScore , IMP::core::HarmonicUpperBoundSphereDiameterPairScore , IMP::core::HarmonicUpperBoundSphereDistancePairScore , IMP::core::KClosePairsPairScore , IMP::core::NormalizedSphereDistancePairScore , IMP::core::PredicateSingletonScore< Predicate, Score > , IMP::core::RefinedPairsPairScore , IMP::core::RigidBodyAnglePairScore , IMP::core::SoftSpherePairScore , IMP::core::SoftSubSurfacePairScore , IMP::core::SoftSuperSurfacePairScore , IMP::core::SphereDistancePairScore , IMP::core::SphereDistanceToSingletonScore , IMP::core::SurfaceDepthPairScore , IMP::core::SurfaceDistancePairScore , IMP::core::SurfaceHeightPairScore , IMP::core::TransformedDistancePairScore , IMP::core::TypedPairScore , IMP::core::WeightedSphereDistancePairScore , IMP::example::ExamplePairScore , IMP::isd::RepulsiveDistancePairScore , IMP::misc::LogPairScore , IMP::misc::LowestRefinedPairScore , IMP::misc::SoftCylinderPairScore , IMP::npc::MinimumSphereDistancePairScore , IMP::npc::SlabWithSphericalIndentMBMScore , IMP::npc::SlabWithToroidalPoreGoPairScore , IMP::npc::SlabWithToroidalPoreMBMScore , IMP::npc::SphericalIndentSurfaceDepthPairScore , IMP::npc::ToroidalPoreSurfaceDepthPairScore , IMP::npctransport::AnchorToCylidnricalPorePairScore , IMP::npctransport::ExcludeZRangeSingletonScore , IMP::npctransport::HarmonicSpringSingletonScore , IMP::npctransport::HarmonicWellPairScore , IMP::npctransport::LinearInteractionPairScore , IMP::npctransport::LinearSoftSpherePairScore , IMP::npctransport::LinearWellPairScore , IMP::npctransport::SitesPairScore , IMP::npctransport::SlabWithCylindricalPorePairScore , IMP::npctransport::SlabWithToroidalPorePairScore , IMP::npctransport::ZBiasSingletonScore , IMP::PairScore , IMP::QuadScore , IMP::score_functor::DistancePairScore< DistanceScoreT > , IMP::score_functor::DistancePairScoreWithCache< DistanceScoreT > , IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT > , IMP::SingletonScore , IMP::spb::AttributeDistancePairScore , IMP::spb::KinkPairScore , IMP::spb::RigidBodyPackingScore , IMP::spb::TiltSingletonScore , IMP::TripletScore
• evaluate_indexes() : IMP::atom::AngleSingletonScore , IMP::atom::BondSingletonScore , IMP::atom::CoulombPairScore , IMP::atom::DihedralSingletonScore , IMP::atom::ImproperSingletonScore , IMP::atom::LennardJonesPairScore , IMP::container::MinimumPairScore , IMP::container::MinimumQuadScore , IMP::container::MinimumSingletonScore , IMP::container::MinimumTripletScore , IMP::core::AngleTripletScore , IMP::core::ClosePairsPairScore , IMP::core::GenericAttributeSingletonScore< UF > , IMP::core::GenericBoundingBox3DSingletonScore< UF > , IMP::core::GenericBoundingSphere3DSingletonScore< UF > , IMP::core::GenericDistanceToSingletonScore< UF > , IMP::core::HarmonicUpperBoundSphereDiameterPairScore , IMP::core::KClosePairsPairScore , IMP::core::NormalizedSphereDistancePairScore , IMP::core::PredicateSingletonScore< Predicate, Score > , IMP::core::RefinedPairsPairScore , IMP::core::RigidBodyAnglePairScore , IMP::core::SphereDistanceToSingletonScore , IMP::core::TransformedDistancePairScore , IMP::core::TypedPairScore , IMP::core::WeightedSphereDistancePairScore , IMP::example::ExamplePairScore , IMP::isd::RepulsiveDistancePairScore , IMP::misc::LowestRefinedPairScore , IMP::misc::SoftCylinderPairScore , IMP::npc::MinimumSphereDistancePairScore , IMP::npc::SlabWithSphericalIndentMBMScore , IMP::npc::SlabWithToroidalPoreGoPairScore , IMP::npc::SlabWithToroidalPoreMBMScore , IMP::npc::SphericalIndentSurfaceDepthPairScore , IMP::npc::ToroidalPoreSurfaceDepthPairScore , IMP::npctransport::AnchorToCylidnricalPorePairScore , IMP::npctransport::ExcludeZRangeSingletonScore , IMP::npctransport::HarmonicSpringSingletonScore , IMP::npctransport::HarmonicWellPairScore , IMP::npctransport::LinearInteractionPairScore , IMP::npctransport::LinearSoftSpherePairScore , IMP::npctransport::LinearWellPairScore , IMP::npctransport::SitesPairScore , IMP::npctransport::SlabWithCylindricalPorePairScore , IMP::npctransport::SlabWithToroidalPorePairScore , IMP::npctransport::ZBiasSingletonScore , IMP::PairScore , IMP::QuadScore , IMP::score_functor::DistancePairScore< DistanceScoreT > , IMP::score_functor::DistancePairScoreWithCache< DistanceScoreT > , IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT > , IMP::SingletonScore , IMP::spb::AttributeDistancePairScore , IMP::spb::KinkPairScore , IMP::spb::RigidBodyPackingScore , IMP::spb::TiltSingletonScore , IMP::TripletScore
• evaluate_indexes_delta() : IMP::atom::AngleSingletonScore , IMP::atom::BondSingletonScore , IMP::atom::CoulombPairScore , IMP::atom::DihedralSingletonScore , IMP::atom::ImproperSingletonScore , IMP::atom::LennardJonesPairScore , IMP::container::MinimumPairScore , IMP::container::MinimumQuadScore , IMP::container::MinimumSingletonScore , IMP::container::MinimumTripletScore , IMP::core::AngleTripletScore , IMP::core::ClosePairsPairScore , IMP::core::GenericAttributeSingletonScore< UF > , IMP::core::GenericBoundingBox3DSingletonScore< UF > , IMP::core::GenericBoundingSphere3DSingletonScore< UF > , IMP::core::GenericDistanceToSingletonScore< UF > , IMP::core::HarmonicUpperBoundSphereDiameterPairScore , IMP::core::KClosePairsPairScore , IMP::core::NormalizedSphereDistancePairScore , IMP::core::PredicateSingletonScore< Predicate, Score > , IMP::core::RefinedPairsPairScore , IMP::core::RigidBodyAnglePairScore , IMP::core::SphereDistanceToSingletonScore , IMP::core::TransformedDistancePairScore , IMP::core::TypedPairScore , IMP::core::WeightedSphereDistancePairScore , IMP::example::ExamplePairScore , IMP::isd::RepulsiveDistancePairScore , IMP::misc::LowestRefinedPairScore , IMP::misc::SoftCylinderPairScore , IMP::npc::MinimumSphereDistancePairScore , IMP::npc::SlabWithSphericalIndentMBMScore , IMP::npc::SlabWithToroidalPoreGoPairScore , IMP::npc::SlabWithToroidalPoreMBMScore , IMP::npc::SphericalIndentSurfaceDepthPairScore , IMP::npc::ToroidalPoreSurfaceDepthPairScore , IMP::npctransport::AnchorToCylidnricalPorePairScore , IMP::npctransport::ExcludeZRangeSingletonScore , IMP::npctransport::HarmonicSpringSingletonScore , IMP::npctransport::HarmonicWellPairScore , IMP::npctransport::LinearWellPairScore , IMP::npctransport::ZBiasSingletonScore , IMP::PairScore , IMP::QuadScore , IMP::score_functor::DistancePairScore< DistanceScoreT > , IMP::score_functor::DistancePairScoreWithCache< DistanceScoreT > , IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT > , IMP::SingletonScore , IMP::spb::AttributeDistancePairScore , IMP::spb::KinkPairScore , IMP::spb::RigidBodyPackingScore , IMP::spb::TiltSingletonScore , IMP::TripletScore
• evaluate_indexes_scores() : IMP::atom::AngleSingletonScore , IMP::atom::BondSingletonScore , IMP::atom::CoulombPairScore , IMP::atom::DihedralSingletonScore , IMP::atom::ImproperSingletonScore , IMP::atom::LennardJonesPairScore , IMP::container::MinimumPairScore , IMP::container::MinimumQuadScore , IMP::container::MinimumSingletonScore , IMP::container::MinimumTripletScore , IMP::core::AngleTripletScore , IMP::core::ClosePairsPairScore , IMP::core::GenericAttributeSingletonScore< UF > , IMP::core::GenericBoundingBox3DSingletonScore< UF > , IMP::core::GenericBoundingSphere3DSingletonScore< UF > , IMP::core::GenericDistanceToSingletonScore< UF > , IMP::core::HarmonicUpperBoundSphereDiameterPairScore , IMP::core::KClosePairsPairScore , IMP::core::NormalizedSphereDistancePairScore , IMP::core::PredicateSingletonScore< Predicate, Score > , IMP::core::RefinedPairsPairScore , IMP::core::RigidBodyAnglePairScore , IMP::core::SphereDistanceToSingletonScore , IMP::core::TransformedDistancePairScore , IMP::core::TypedPairScore , IMP::core::WeightedSphereDistancePairScore , IMP::example::ExamplePairScore , IMP::isd::RepulsiveDistancePairScore , IMP::misc::LowestRefinedPairScore , IMP::misc::SoftCylinderPairScore , IMP::npc::MinimumSphereDistancePairScore , IMP::npc::SlabWithSphericalIndentMBMScore , IMP::npc::SlabWithToroidalPoreGoPairScore , IMP::npc::SlabWithToroidalPoreMBMScore , IMP::npc::SphericalIndentSurfaceDepthPairScore , IMP::npc::ToroidalPoreSurfaceDepthPairScore , IMP::npctransport::AnchorToCylidnricalPorePairScore , IMP::npctransport::ExcludeZRangeSingletonScore , IMP::npctransport::HarmonicSpringSingletonScore , IMP::npctransport::HarmonicWellPairScore , IMP::npctransport::LinearWellPairScore , IMP::npctransport::ZBiasSingletonScore , IMP::PairScore , IMP::QuadScore , IMP::score_functor::DistancePairScore< DistanceScoreT > , IMP::score_functor::DistancePairScoreWithCache< DistanceScoreT > , IMP::score_functor::SurfaceDistancePairScore< DistanceScoreT > , IMP::SingletonScore , IMP::spb::AttributeDistancePairScore , IMP::spb::KinkPairScore , IMP::spb::RigidBodyPackingScore , IMP::spb::TiltSingletonScore , IMP::TripletScore
• evaluate_moved() : IMP::Restraint , IMP::ScoringFunction
• evaluate_moved_if_below() : IMP::Restraint
• evaluate_moved_if_good() : IMP::Restraint
• evaluate_second_derivative_FM_FM() : IMP::isd::MultivariateFNormalSufficient
• evaluate_second_derivative_FM_Sigma() : IMP::isd::MultivariateFNormalSufficient
• evaluate_second_derivative_Sigma_Sigma() : IMP::isd::MultivariateFNormalSufficient
• evaluate_site_contributions() : IMP::npctransport::SitesPairScore
• evaluate_site_contributions_with_internal_tables() : IMP::npctransport::SitesPairScore
• evaluate_with_derivative() : IMP::core::ClosedCubicSpline , IMP::core::Cosine , IMP::core::Harmonic , IMP::core::HarmonicLowerBound , IMP::core::HarmonicUpperBound , IMP::core::HarmonicWell , IMP::core::Linear , IMP::core::SurfaceTetheredChain , IMP::core::TruncatedHarmonic< DIRECTION > , IMP::core::WeightedSum , IMP::core::WeightedSumOfExponential , IMP::example::ExampleUnaryFunction , IMP::misc::FreelyJointedChain , IMP::misc::WormLikeChain , IMP::score_functor::ScoreUnaryFunction< Score, D > , IMP::spb::Gaussian , IMP::UnaryFunction
• EventException() : IMP::EventException
• ExampleComplexRestraint() : IMP::example::ExampleComplexRestraint
• ExampleRestraint() : IMP::example::ExampleRestraint
• ExampleTemplateClassD() : IMP::example::ExampleTemplateClassD< D >
• ExampleUnaryFunction() : IMP::example::ExampleUnaryFunction
• exclude_coordinates() : IMP.pmi.mmcif.ProtocolOutput
• ExcludedVolumeRestraint() : IMP::core::ExcludedVolumeRestraint
• ExcludeZRangeSingletonScore() : IMP::npctransport::ExcludeZRangeSingletonScore
• execute() : IMP::kmeans::KMeans
• execute_macro() : IMP.pmi.macros.BuildSystem
• ExtendedGridIndexD() : IMP::algebra::ExtendedGridIndexD< D >