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IMP Reference Guide
develop.63b38c487d,2024/12/21
The Integrative Modeling Platform
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Embed a configuration using the XYZ coordinates of a set of particles. More...
#include <IMP/statistics/embeddings.h>
Inheritance diagram for IMP::statistics::ConfigurationSetXYZEmbedding:Embed a configuration using the XYZ coordinates of a set of particles.
The point for each configuration of the model is a concatenation of the Cartesian coordinates of the particles contained in the passed SingletonContainer.
See ConfigurationSet for more information about the input.
Definition at line 28 of file embeddings.h.
Public Member Functions | |
| ConfigurationSetXYZEmbedding (ConfigurationSet *cs, SingletonContainerAdaptor pi, bool align=false) | |
| unsigned int | get_number_of_items () const override |
| algebra::VectorKD | get_point (unsigned int i) const override |
| virtual std::string | get_type_name () const override |
| virtual ::IMP::VersionInfo | get_version_info () const override |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::statistics::Embedding | |
| virtual algebra::VectorKDs | get_points () const |
| double | get_weight (unsigned int i) const |
| Return a weight for the point. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Protected Member Functions inherited from IMP::statistics::Embedding | |
| Embedding (std::string name) | |
| virtual double | do_get_weight (unsigned int i) const |
| By default return 1.0. More... | |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::statistics::ConfigurationSetXYZEmbedding::ConfigurationSetXYZEmbedding | ( | ConfigurationSet * | cs, |
| SingletonContainerAdaptor | pi, | ||
| bool | align = false |
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| ) |
If align is true, all the configurations are rigidly aligned with the first before generating their coordinates.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 42 of file embeddings.h.