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IMP Reference Guide  develop.cc86c9801d,2022/11/22
The Integrative Modeling Platform
IMP.pmi.topology.PDBSequences Class Reference

Data structure for reading and storing sequence data from PDBs. More...

Inherits object.

Detailed Description

Data structure for reading and storing sequence data from PDBs.

See Also
fasta_pdb_alignments.
Note
This class is only available in Python.

Definition at line 1021 of file pmi/topology/__init__.py.

Public Member Functions

def __init__
 Read a PDB file and return all sequences for each contiguous fragment. More...
 

Constructor & Destructor Documentation

def IMP.pmi.topology.PDBSequences.__init__ (   self,
  model,
  pdb_fn,
  name_map = None 
)

Read a PDB file and return all sequences for each contiguous fragment.

Parameters
pdb_fnfile
name_mapdictionary mapping the pdb chain id to final stored name

Definition at line 1027 of file pmi/topology/__init__.py.


The documentation for this class was generated from the following file: