IMP.pmi.topology.PDBSequences Class Reference

Data structure for reading and storing sequence data from PDBs. More...

Detailed Description

Data structure for reading and storing sequence data from PDBs.

See Also

fasta_pdb_alignments.

Note

This class is only available in Python.

Definition at line 1089 of file pmi/topology/__init__.py.

Public Member Functions
def	__init__
	Read a PDB file and return all sequences for each contiguous fragment. More...

Constructor & Destructor Documentation

def IMP.pmi.topology.PDBSequences.__init__	(		self,
			model,
			pdb_fn,
			name_map = None
	)

Read a PDB file and return all sequences for each contiguous fragment.

Parameters

pdb_fn	file
name_map	dictionary mapping the pdb chain id to final stored name

Definition at line 1095 of file pmi/topology/__init__.py.

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The documentation for this class was generated from the following file:

• pmi/topology/__init__.py