IMP.pmi.restraints.basic.ResidueProteinProximityRestraint Class Reference

Restrain residue/residues to bind to unknown location in a target. More...

Inherits RestraintBase.

Detailed Description

Restrain residue/residues to bind to unknown location in a target.

Note

This class is only available in Python.

Definition at line 445 of file basic.py.

Public Member Functions
def	__init__
	Constructor. More...
def	get_container_pairs
	Get particles in the close pair container. More...

Constructor & Destructor Documentation

def IMP.pmi.restraints.basic.ResidueProteinProximityRestraint.__init__	(		self,
			hier,
			selection,
			cutoff = 6.0,
			sigma = 3.0,
			xi = 0.01,
			resolution = 1.0,
			weight = 1.0,
			label = None
	)

Constructor.

Parameters

hier	Hierarchy of the system
selection	Selection of residues and target; syntax is (prot, r1, r2, target_prot) or (prot1, r1, r2, target_prot, target_r1, target_r2)
cutoff	Distance cutoff between selected segment and target protein
sigma	Distance variance between selected fragments
xi	Slope of a distance-linear scoring function that funnels the score when the particles are too far away
resolution	Resolution at which to apply restraint
weight	Weight of the restraint
label	Extra text to label the restraint so that it is searchable in the output

Definition at line 461 of file basic.py.

Member Function Documentation

def IMP.pmi.restraints.basic.ResidueProteinProximityRestraint.get_container_pairs

(

self

)

Get particles in the close pair container.

Definition at line 568 of file basic.py.

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The documentation for this class was generated from the following file:

• basic.py