IMP logo
IMP Reference Guide  develop.5de2a9ba5d,2024/02/25
The Integrative Modeling Platform
IMP.pmi.mmcif.Entity Class Reference

A single entity in the system. More...

Inherits Entity.

Detailed Description

A single entity in the system.

This functions identically to the base ihm.Entity class, but it allows identifying residues by either the IHM numbering scheme (seq_id, which is always contiguous starting at 1) or by the PMI scheme (which is similar, but may not start at 1 if the sequence in the FASTA file has one or more N-terminal gaps

Note
This class is only available in Python.

Definition at line 1195 of file mmcif.py.

Public Member Functions

def pmi_range
 Return a range of IHM residues indexed using PMI numbering. More...
 
def pmi_residue
 Return a single IHM residue indexed using PMI numbering. More...
 

Member Function Documentation

def IMP.pmi.mmcif.Entity.pmi_range (   self,
  res_id_begin,
  res_id_end 
)

Return a range of IHM residues indexed using PMI numbering.

Definition at line 1212 of file mmcif.py.

def IMP.pmi.mmcif.Entity.pmi_residue (   self,
  res_id 
)

Return a single IHM residue indexed using PMI numbering.

Definition at line 1208 of file mmcif.py.


The documentation for this class was generated from the following file: