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IMP Reference Guide
develop.d97d4ead1f,2024/11/22
The Integrative Modeling Platform
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A single entity in the system. More...
Inherits Entity.
A single entity in the system.
This contains information (such as database identifiers) specific to a particular sequence rather than a copy (for example, when modeling a homodimer, two AsymUnits will point to the same Entity).
This functions identically to the base ihm.Entity class, but it allows identifying residues by either the PMI numbering scheme (which is always contiguous starting at 1, covering the entire sequence in the FASTA files, or the IHM scheme (seq_id, which also starts at 1, but which only covers the modeled subset of the full sequence, with non-modeled N-terminal or C-terminal residues removed). The actual offset (which is the integer to be added to the IHM numbering to get PMI numbering, or equivalently the number of not-represented N-terminal residues in the PMI sequence) is available in the pmi_offset member.
Public Member Functions | |
| def | pmi_range |
| Return a range of IHM residues indexed using PMI numbering. More... | |
| def | pmi_residue |
| Return a single IHM residue indexed using PMI numbering. More... | |
| def IMP.pmi.mmcif.Entity.pmi_range | ( | self, | |
| res_id_begin, | |||
| res_id_end | |||
| ) |
| def IMP.pmi.mmcif.Entity.pmi_residue | ( | self, | |
| res_id | |||
| ) |