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IMP Reference Guide  develop.cc86c9801d,2022/11/22
The Integrative Modeling Platform
IMP.pmi.analysis.Alignment Class Reference

Performs alignment and RMSD calculation for two sets of coordinates. More...

Inherits object.

Detailed Description

Performs alignment and RMSD calculation for two sets of coordinates.

The class also takes into account non-equal stoichiometry of the proteins. If this is the case, the protein names of proteins in multiple copies should be specified in the following form: nameA..1, nameA..2 (note two dots).

Note
This class is only available in Python.

Definition at line 22 of file pmi/Analysis.py.

Public Member Functions

def __init__
 Constructor. More...
 

Constructor & Destructor Documentation

def IMP.pmi.analysis.Alignment.__init__ (   self,
  template,
  query,
  weights = None 
)

Constructor.

Parameters
query{'p1':coords(L,3), 'p2':coords(L,3)}
template{'p1':coords(L,3), 'p2':coords(L,3)}
weightsoptional weights for each set of coordinates

Definition at line 31 of file pmi/Analysis.py.


The documentation for this class was generated from the following file: