IMP Reference Guide  develop.cc86c9801d,2022/11/22 The Integrative Modeling Platform
IMP.pmi1.restraints.em2d.ElectronMicroscopy2D Class Reference

Fit particles against a set of class averages by principal components. More...

Inherits object.

## Detailed Description

Fit particles against a set of class averages by principal components.

Compares how well the principal components of the segmented class average fit to the principal components of the particles.

Note
This class is only available in Python.

Definition at line 14 of file /restraints/em2d.py.

## Public Member Functions

def __init__
Constructor. More...

## Constructor & Destructor Documentation

 def IMP.pmi1.restraints.em2d.ElectronMicroscopy2D.__init__ ( self, representation = None, images = None, pixel_size = None, image_resolution = None, projection_number = None, micrographs_number = None, resolution = None, n_components = 1, hier = None )

Constructor.

Parameters
 representation DEPRECATED, pass 'hier' instead images 2D class average filenames in PGM text format pixel_size Pixel size in angstroms image_resolution Estimated resolution of the images in angstroms projection_number Number of projections of the model to generate and fit to images. The lower the number, the faster the evaluation, but the lower the accuracy micrographs_number Number of micrograph particles that were used to generate the class averages, if known resolution Which level of model representation to use in the fit n_components Number of the largest components to be considered for the EM image hier The root hierarchy for applying the restraint

Definition at line 31 of file /restraints/em2d.py.

The documentation for this class was generated from the following file: