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IMP Reference Guide  develop.9f755902c2,2022/12/07
The Integrative Modeling Platform
IMP.pmi1.macros.BuildModel1 Class Reference

Building macro. More...

Inherits object.

Detailed Description

Building macro.

Note
This class is only available in Python.

Definition at line 850 of file /macros.py.

Public Member Functions

def __init__
 Constructor. More...
 
def build_model
 Create model. More...
 

Constructor & Destructor Documentation

def IMP.pmi1.macros.BuildModel1.__init__ (   self,
  representation 
)

Constructor.

Parameters
representationThe PMI representation

Definition at line 853 of file /macros.py.

Member Function Documentation

def IMP.pmi1.macros.BuildModel1.build_model (   self,
  data_structure,
  sequence_connectivity_scale = 4.0,
  sequence_connectivity_resolution = 10,
  rmf_file = None,
  rmf_frame_number = 0,
  rmf_file_map = None,
  skip_connectivity_these_domains = None,
  skip_gaussian_in_rmf = False,
  skip_gaussian_in_representation = False 
)

Create model.

Parameters
data_structureList of lists containing these entries: comp_name, hier_name, color, fasta_file, fasta_id, pdb_name, chain_id, res_range, read_em_files, bead_size, rb, super_rb, em_num_components, em_txt_file_name, em_mrc_file_name, chain_of_super_rb, keep_gaussian_flexible_beads (optional)
sequence_connectivity_scale
rmf_file
rmf_frame_number
rmf_file_map: a dictionary that map key=component_name:value=(rmf_file_name, rmf_frame_number, rmf_component_name)

Definition at line 867 of file /macros.py.


The documentation for this class was generated from the following file: