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IMP Reference Guide
develop.d97d4ead1f,2024/11/21
The Integrative Modeling Platform
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Class that produces analysis-related output, and is able to parse the output of a file produced by the Statistics class. More...
Class that produces analysis-related output, and is able to parse the output of a file produced by the Statistics class.
Definition at line 8 of file isd/Analysis.py.
Public Member Functions | |
| def | add_data |
| adds data point to hierarchy More... | |
| def | create_entry |
| adds a new entry to the hierarchy by parsing a title entry More... | |
| def | dump |
| "dump float data from history h to file dest. More... | |
| def | histogram |
| plots histogram of datum (cat,name) from hierarchy h, optionally specifying a range. More... | |
| def | plot |
| plots datum (cat,name) from hierarchy h, optionally specifying a range. More... | |
| def | read_AMBER_stats |
| reads an AMBER mden file and returns a History instance More... | |
| def | read_AMBER_variables |
| reads an AMBER mden file and returns variables present in it More... | |
| def | read_stats |
| reads a *_stats.txt file and returns a History instance More... | |
| def | read_variables |
| reads a *_stats.txt file and returns variables present in it More... | |
| def IMP.isd.Analysis.Analysis.add_data | ( | self, | |
| h, | |||
| lineno, | |||
| colno, | |||
| data | |||
| ) |
adds data point to hierarchy
Definition at line 26 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.create_entry | ( | self, | |
| h, | |||
| lineno, | |||
| el | |||
| ) |
adds a new entry to the hierarchy by parsing a title entry
Definition at line 14 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.dump | ( | self, | |
| h, | |||
| dest, | |||
| args | |||
| ) |
"dump float data from history h to file dest.
args can be either strings corresponding to categories, or tuples corresponding to entries of a certain category. Only one counter will be output for the whole dump, it corresponds to the counter of the first entry's category. You can always specify additional counters if needed.
Definition at line 150 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.histogram | ( | self, | |
| h, | |||
| datums, | |||
| kwargs | |||
| ) |
plots histogram of datum (cat,name) from hierarchy h, optionally specifying a range.
To plot multiple data at the same time, add them sequentially.
Definition at line 138 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.plot | ( | self, | |
| h, | |||
| datums, | |||
| kwargs | |||
| ) |
plots datum (cat,name) from hierarchy h, optionally specifying a range.
To plot multiple data at the same time, add them sequentially. Takes x axis from the 'step' entry of the first datum. TODO.
Definition at line 122 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.read_AMBER_stats | ( | self, | |
| statfile | |||
| ) |
reads an AMBER mden file and returns a History instance
Definition at line 73 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.read_AMBER_variables | ( | self, | |
| statfile | |||
| ) |
reads an AMBER mden file and returns variables present in it
Definition at line 57 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.read_stats | ( | self, | |
| statfile | |||
| ) |
reads a *_stats.txt file and returns a History instance
Definition at line 96 of file isd/Analysis.py.
| def IMP.isd.Analysis.Analysis.read_variables | ( | self, | |
| statfile | |||
| ) |
reads a *_stats.txt file and returns variables present in it
Definition at line 38 of file isd/Analysis.py.