Detailed Description

Class to read EM maps (3D) in Spider and Xmipp formats.

Note: : Compatible only with Xmipp 2.2 and Spider floating point maps; : A DensityHeader class must be provided

Definition at line 35 of file SpiderReaderWriter.h.

Public Member Functions
	SpiderMapReaderWriter ()

	SpiderMapReaderWriter (String filename, bool skip_type_check, bool force_reversed, bool skip_extra_checkings)
	Full constructor. More...

virtual std::string	get_type_name () const override

virtual ::IMP::VersionInfo	get_version_info () const override
	Get information about the module and version of the object. More...

void	read (const char filename, float *data, DensityHeader &header) override
	Reads a map in Spider format and transfers the data and header. More...

void	write (const char filename, const float data, const DensityHeader &header) override
	Writes a map in Spider format from data and header. More...

Public Member Functions inherited from IMP::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

def	get_derived_object
	Return this object cast to the most derived subclass. More...

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::em::SpiderMapReaderWriter::SpiderMapReaderWriter ( )

Empty constructor. It does not force reversed header and does not skip any of the tests

Definition at line 44 of file SpiderReaderWriter.h.

IMP::em::SpiderMapReaderWriter::SpiderMapReaderWriter	(	String	filename,
		bool	skip_type_check,
		bool	force_reversed,
		bool	skip_extra_checkings
	)

Full constructor.

Parameters

[in]	filename	file to read
[in]	skip_type_check	if true, the check for type of image is skipped
[in]	force_reversed	if true, the reverse mode is enforced for reading and writing
[in]	skip_extra_checkings	if true, the most stringent tests for consistency of images are skipped when reading

Definition at line 59 of file SpiderReaderWriter.h.

virtual ::IMP::VersionInfo IMP::em::SpiderMapReaderWriter::get_version_info ( ) const

overridevirtual

Get information about the module and version of the object.

Definition at line 87 of file SpiderReaderWriter.h.

void IMP::em::SpiderMapReaderWriter::read	(	const char *	filename,
		float **	data,
		DensityHeader &	header
	)

overridevirtual

Reads a map in Spider format and transfers the data and header.

Parameters

[in]	filename	file to read
[in]	data	pointer to the structure where to store the data
[in]	header	DensityHeader class where to store the info from the header.

void IMP::em::SpiderMapReaderWriter::write	(	const char *	filename,
		const float *	data,
		const DensityHeader &	header
	)

overridevirtual

Writes a map in Spider format from data and header.

Parameters

[in]	filename	file to write
[in]	data	pointer to the structure where data are stored
[in]	header	DensityHeader class where the header info is stored data from the header.

The documentation for this class was generated from the following file: