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IMP Reference Guide
develop.d97d4ead1f,2024/11/21
The Integrative Modeling Platform
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Set the coordinates of a particle to be a transformed version of a reference. More...
#include <IMP/core/symmetry.h>
Inheritance diagram for IMP::core::TransformationAndReflectionSymmetry:Set the coordinates of a particle to be a transformed version of a reference.
The passed particles must be Reference particles and XYZ particles and must not be RigidBody particles.
Definition at line 51 of file core/symmetry.h.
Public Member Functions | |
| TransformationAndReflectionSymmetry (const algebra::Transformation3D &t, const algebra::Reflection3D &r) | |
| Create with both reflection and translation. More... | |
| virtual void | apply_index (Model *m, ParticleIndex p) const override |
| virtual void | apply_indexes (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound) const overridefinal |
| virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const override |
| Overload this method to specify the inputs. More... | |
| virtual ModelObjectsTemp | do_get_outputs (Model *m, const ParticleIndexes &pis) const override |
| Overload this method to specify the outputs. More... | |
| virtual std::string | get_type_name () const override |
| virtual ::IMP::VersionInfo | get_version_info () const override |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::SingletonModifier | |
| SingletonModifier (std::string name="SingletonModifier %1%") | |
| virtual void | apply_indexes_moved (Model *m, const ParticleIndexes &o, unsigned int lower_bound, unsigned int upper_bound, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const |
| Public Member Functions inherited from IMP::ParticleInputs | |
| ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects read when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::ParticleOutputs | |
| ModelObjectsTemp | get_outputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects changed when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::SingletonModifier | |
| typedef Particle * | Argument |
| typedef ParticleIndex | IndexArgument |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::core::TransformationAndReflectionSymmetry::TransformationAndReflectionSymmetry | ( | const algebra::Transformation3D & | t, |
| const algebra::Reflection3D & | r | ||
| ) |
Create with both reflection and translation.
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overridevirtual |
Apply the function to a single value
Implements IMP::SingletonModifier.
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finaloverridevirtual |
Apply the function to a collection of ParticlesTemp If bounds are passed, only apply to ones between the upper and lower bounds.
Reimplemented from IMP::SingletonModifier.
Definition at line 67 of file core/symmetry.h.
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overridevirtual |
Overload this method to specify the inputs.
Implements IMP::ParticleInputs.
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overridevirtual |
Overload this method to specify the outputs.
Implements IMP::ParticleOutputs.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 68 of file core/symmetry.h.