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IMP Reference Guide  develop.3e83b1f578,2019/10/15
The Integrative Modeling Platform
IMP::core::GridClosePairsFinder Class Reference

Find all nearby pairs by testing all pairs. More...

#include <IMP/core/GridClosePairsFinder.h>

+ Inheritance diagram for IMP::core::GridClosePairsFinder:

Detailed Description

Find all nearby pairs by testing all pairs.

See Also
ClosePairsScoreState

Definition at line 21 of file GridClosePairsFinder.h.

Public Member Functions

virtual ModelObjectsTemp do_get_inputs (Model *m, const ParticleIndexes &pis) const
 Overload this method to specify the inputs. More...
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bbs) const
 
virtual IntPairs get_close_pairs (const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const
 
virtual ParticleIndexPairs get_close_pairs (Model *m, const ParticleIndexes &pc) const
 return all close pairs among pc in model m More...
 
virtual ParticleIndexPairs get_close_pairs (Model *m, const ParticleIndexes &pca, const ParticleIndexes &pcb) const
 return all close pairs among pc in model m More...
 
virtual std::string get_type_name () const
 
virtual ::IMP::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::core::ClosePairsFinder
 ClosePairsFinder (std::string name)
 
virtual void set_distance (double d)
 
double get_distance () const
 
void remove_pair_filter (PairPredicate *d)
 
void remove_pair_filters (const PairPredicates &d)
 
void set_pair_filters (const PairPredicates &ps)
 
void set_pair_filters_order (const PairPredicates &objs)
 
unsigned int add_pair_filter (PairPredicate *obj)
 
void add_pair_filters (const PairPredicates &objs)
 
void clear_pair_filters ()
 
unsigned int get_number_of_pair_filters () const
 
bool get_has_pair_filters ()
 
PairPredicateget_pair_filter (unsigned int i) const
 
PairPredicates get_pair_filters () const
 
void reserve_pair_filters (unsigned int sz)
 
- Public Member Functions inherited from IMP::ParticleInputs
ModelObjectsTemp get_inputs (Model *m, const ParticleIndexes &pis) const
 Get the ModelObjects read when the given list of particles is used. More...
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Member Function Documentation

virtual ModelObjectsTemp IMP::core::GridClosePairsFinder::do_get_inputs ( Model m,
const ParticleIndexes pis 
) const
virtual

Overload this method to specify the inputs.

Implements IMP::ParticleInputs.

virtual ParticleIndexPairs IMP::core::GridClosePairsFinder::get_close_pairs ( Model m,
const ParticleIndexes pc 
) const
virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ParticleIndexPairs IMP::core::GridClosePairsFinder::get_close_pairs ( Model m,
const ParticleIndexes pca,
const ParticleIndexes pcb 
) const
virtual

return all close pairs among pc in model m

Implements IMP::core::ClosePairsFinder.

virtual ::IMP::VersionInfo IMP::core::GridClosePairsFinder::get_version_info ( ) const
virtual

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 37 of file GridClosePairsFinder.h.


The documentation for this class was generated from the following file: