Class for scoring model fluorescence decay. More...

#include <IMP/bff/DecayScore.h>

Inheritance diagram for IMP::bff::DecayScore:

Detailed Description

Class for scoring model fluorescence decay.

This class provides functionality for scoring the fluorescence decay of a model against experimental data. It calculates the score based on various scoring types, such as Poisson, Pearson, Gauss, CNP, and SSWR (Sum of Weighted Squared Residuals). The score can be calculated for a specific range of data points.

Definition at line 34 of file DecayScore.h.

Public Member Functions
	DecayScore (DecayCurve model=nullptr, DecayCurve data=nullptr, std::string score_type="poisson", int start=0, int stop=-1)
	Constructs a DecayScore object with the specified model, experimental data, score type, and range of data points. More...

	~DecayScore () override
	Destroys the DecayScore object and frees any allocated memory. More...

DecayCurve *	get_data ()

DecayCurve *	get_model ()

double	get_score (int start=0, int stop=-1, const char *score_type=nullptr)

std::string	get_score_type ()

std::vector< double > &	get_weighted_residuals ()

double	score (DecayCurve *model=nullptr)

void	set (DecayCurve model, DecayCurve data, std::string score_type="poisson", int start=0, int stop=-1)

void	set_data (DecayCurve *v)

void	set_model (DecayCurve *v)

void	set_score_type (std::string v)

Public Member Functions inherited from IMP::bff::DecayRange
	DecayRange (int start, int stop)
	Constructor. More...

virtual	~DecayRange ()=default
	Destructor. More...

std::vector< int >	get_range (DecayCurve *d=nullptr)
	Get the range as a vector of indices. More...

size_t	get_start (DecayCurve *d=nullptr) const
	Get the start index of the decay range. More...

size_t	get_stop (DecayCurve *d=nullptr) const
	Get the stop index of the decay range. More...

void	set (int start=0, int stop=-1)
	Set the start and stop indices of the decay range. More...

void	set_range (std::vector< int > v)
	Set the range using a vector of indices. More...

void	set_start (int v)
	Set the start index of the decay range. More...

void	set_stop (int v)
	Set the stop index of the decay range. More...

void	show (std::ostream &out=std::cout) const

Constructor & Destructor Documentation

IMP::bff::DecayScore::DecayScore	(	DecayCurve *	model = `nullptr`,
		DecayCurve *	data = `nullptr`,
		std::string	score_type = `"poisson"`,
		int	start = `0`,
		int	stop = `-1`
	)

Constructs a DecayScore object with the specified model, experimental data, score type, and range of data points.

Parameters

model	Pointer to the model decay curve
data	Pointer to the experimental data decay curve
score_type	Type of score to calculate (default: "poisson")
start	Start index of the range of data points to consider (default: 0)
stop	Stop index of the range of data points to consider (default: -1, i.e., all points)

IMP::bff::DecayScore::~DecayScore ( )

override

Destroys the DecayScore object and frees any allocated memory.

Definition at line 134 of file DecayScore.h.

Member Function Documentation

DecayCurve* IMP::bff::DecayScore::get_data ( )

Get the experimental data decay curve.

Returns: Pointer to the experimental data decay curve

DecayCurve* IMP::bff::DecayScore::get_model ( )

Get the model decay curve.

Returns: Pointer to the model decay curve

double IMP::bff::DecayScore::get_score	(	int	start = `0`,
		int	stop = `-1`,
		const char *	score_type = `nullptr`
	)

Calculate the score based on the specified scoring type.

Parameters

start	Start index of the range of data points to consider (default: 0)
stop	Stop index of the range of data points to consider (default: -1, i.e., all points)
score_type	Type of score to calculate (default: nullptr, i.e., use the current score type)

Returns: The calculated score

std::string IMP::bff::DecayScore::get_score_type ( )

Get the score type.

Returns: The current score type

std::vector<double>& IMP::bff::DecayScore::get_weighted_residuals ( )

Get the vector of weighted residuals.

Returns: Reference to the vector of weighted residuals

double IMP::bff::DecayScore::score ( DecayCurve * model = nullptr )

Evaluate and return the score.

Parameters

model Pointer to the model decay curve (default: nullptr, i.e., use the current model)

Returns: The calculated score

void IMP::bff::DecayScore::set	(	DecayCurve *	model,
		DecayCurve *	data,
		std::string	score_type = `"poisson"`,
		int	start = `0`,
		int	stop = `-1`
	)

Set the model and experimental data decay curves, score type, and range of data points.

Parameters

model	Pointer to the model decay curve
data	Pointer to the experimental data decay curve
score_type	Type of score to calculate (default: "poisson")
start	Start index of the range of data points to consider (default: 0)
stop	Stop index of the range of data points to consider (default: -1, i.e., all points)

void IMP::bff::DecayScore::set_data ( DecayCurve * v )

Set the experimental data decay curve.

Parameters

v	Pointer to the experimental data decay curve

void IMP::bff::DecayScore::set_model ( DecayCurve * v )

Set the model decay curve.

Parameters

v	Pointer to the model decay curve

void IMP::bff::DecayScore::set_score_type ( std::string v )

Set the score type.

Parameters

v	The score type to set

The documentation for this class was generated from the following file:

DecayScore.h

Detailed Description

Public Member Functions

Constructor & Destructor Documentation

Member Function Documentation