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IMP Reference Guide  develop.cb6747d2d1,2024/03/28
The Integrative Modeling Platform
IMP::atom::Fragment Member List

This is the complete list of members for IMP::atom::Fragment, including all inherited members.

add_child(Hierarchy o)IMP::atom::Hierarchy
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
clear_children() (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
create_clone(Hierarchy d)IMP::atom::Hierarchyrelated
create_clone_one(Hierarchy d)IMP::atom::Hierarchyrelated
create_fragment(const Hierarchies &ps)IMP::atom::Hierarchyrelated
Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator() (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator(ParticleAdaptor p) (defined in IMP::Decorator)IMP::Decoratorexplicitprotected
DecoratorTraits typedef (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
destroy(Hierarchy d)IMP::atom::Hierarchyrelated
Fragment() (defined in IMP::atom::Fragment)IMP::atom::Fragment
Fragment(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::Fragment)IMP::atom::Fragment
Fragment(const IMP::ParticleAdaptor &d) (defined in IMP::atom::Fragment)IMP::atom::Fragmentexplicit
get_bounding_box(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_bounding_sphere(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_by_type(Hierarchy mhd, GetByType t)IMP::atom::Hierarchyrelated
get_changed_key()IMP::core::Hierarchystatic
get_child(unsigned int i) const IMP::atom::Hierarchy
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_child_index() const IMP::core::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children_indexes() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_contains_any_sorted_residue(const Ints &rinds) const IMP::atom::Fragment
get_contains_residue(int rindex) const IMP::atom::Fragment
get_decorator_traits() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_default_decorator_traits() (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
get_default_traits()IMP::core::Hierarchystatic
get_internal_bonds(Hierarchy mhd)IMP::atom::Hierarchyrelated
get_is_heterogen(Hierarchy h)IMP::atom::Hierarchyrelated
get_is_setup(Model *m, ParticleIndex pi) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
get_is_setup(const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::get_is_setup(Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits())IMP::core::Hierarchystatic
get_is_valid(bool print_info=false) const IMP::atom::Hierarchy
IMP::core::Hierarchy::get_is_valid() const IMP::Decorator
get_leaves(Hierarchy h)IMP::atom::Hierarchyrelated
get_leaves(const Hierarchies &h)IMP::atom::Hierarchyrelated
get_model() const IMP::Decorator
get_number_of_children() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_parent() const IMP::atom::Hierarchy
get_particle() const IMP::Decorator
get_particle_index() const IMP::Decorator
get_residue(Hierarchy mhd, unsigned int index)IMP::atom::Hierarchyrelated
get_residue_indexes() const (defined in IMP::atom::Fragment)IMP::atom::Fragment
get_root(Hierarchy h)IMP::atom::Hierarchyrelated
get_traits()IMP::atom::Hierarchystatic
Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy(ParticleAdaptor pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy()IMP::atom::Hierarchy
Hierarchy(IMP::core::Hierarchy h)IMP::atom::Hierarchyexplicit
Hierarchy(::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Hierarchy(const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchyexplicit
operator Particle *() const (defined in IMP::Decorator)IMP::Decorator
operator ParticleIndex() const (defined in IMP::Decorator)IMP::Decorator
operator->() const (defined in IMP::Decorator)IMP::Decorator
remove_child(unsigned int i) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
set_residue_indexes(Ints o)IMP::atom::Fragment
setup_particle(Model *m, ParticleIndex pi)IMP::atom::Fragmentstatic
setup_particle(IMP::ParticleAdaptor pa)IMP::atom::Fragmentstatic
setup_particle(Model *m, ParticleIndex pi, Fragment other)IMP::atom::Fragmentstatic
setup_particle(IMP::ParticleAdaptor pa, Fragment other)IMP::atom::Fragmentstatic
setup_particle(Model *m, ParticleIndex pi, Ints residue_indexes)IMP::atom::Fragmentstatic
setup_particle(IMP::ParticleAdaptor pa, Ints residue_indexes)IMP::atom::Fragmentstatic
IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor())IMP::atom::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::Fragment)IMP::atom::Fragment
IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout)IMP::atom::Hierarchyrelated
Value() (defined in IMP::Value)IMP::Valueprotected