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IMP Reference Guide  develop.cb469e0f11,2024/05/28
The Integrative Modeling Platform
IMP::atom::ChainPDBSelector Class Reference

Select all ATOM and HETATM records with the given chain ids. More...

#include <IMP/atom/pdb.h>

+ Inheritance diagram for IMP::atom::ChainPDBSelector:

Detailed Description

Select all ATOM and HETATM records with the given chain ids.

When reading mmCIF format, this will use the author-provided chain ID, if available; otherwise the mmCIF "chain" ID, label_asym_id, will be used.

Definition at line 256 of file pdb.h.

Public Member Functions

 ChainPDBSelector (Strings chains, std::string name="ChainPDBSelector%1%")
 Allow any of the named chains. More...
 
bool get_is_selected (const PDBRecord &record) const override
 Return true if the line should be processed. More...
 
virtual std::string get_type_name () const override
 
virtual ::IMP::VersionInfo get_version_info () const override
 Get information about the module and version of the object. More...
 
- Public Member Functions inherited from IMP::atom::NonAlternativePDBSelector
 NonAlternativePDBSelector (std::string name="NonAlternativePDBSelector%1%")
 
- Public Member Functions inherited from IMP::atom::PDBSelector
 PDBSelector (std::string name)
 
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
 
CheckLevel get_check_level () const
 
LogLevel get_log_level () const
 
void set_check_level (CheckLevel l)
 
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
 
void set_was_used (bool tf) const
 
void show (std::ostream &out=std::cout) const
 
const std::string & get_name () const
 
void set_name (std::string name)
 

Additional Inherited Members

- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
 
virtual void do_destroy ()
 

Constructor & Destructor Documentation

IMP::atom::ChainPDBSelector::ChainPDBSelector ( Strings  chains,
std::string  name = "ChainPDBSelector%1%" 
)

Allow any of the named chains.

Chain IDs here, and in mmCIF files, can be any length, although chains in legacy PDB files are restricted to a single character.

Definition at line 272 of file pdb.h.

Member Function Documentation

bool IMP::atom::ChainPDBSelector::get_is_selected ( const PDBRecord record) const
overridevirtual

Return true if the line should be processed.

Reimplemented from IMP::atom::NonAlternativePDBSelector.

Definition at line 258 of file pdb.h.

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virtual ::IMP::VersionInfo IMP::atom::ChainPDBSelector::get_version_info ( ) const
overridevirtual

Get information about the module and version of the object.

Reimplemented from IMP::atom::NonAlternativePDBSelector.

Definition at line 265 of file pdb.h.


The documentation for this class was generated from the following file: