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IMP Reference Guide
develop.d97d4ead1f,2024/11/21
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::CHARMMAtom, including all inherited members.
| add_child(Hierarchy o) | IMP::atom::Hierarchy | |
| add_child(Hierarchy h) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Atom() (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| Atom(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| Atom(const IMP::ParticleAdaptor &d) (defined in IMP::atom::Atom) | IMP::atom::Atom | explicit |
| CHARMMAtom() (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| CHARMMAtom(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| CHARMMAtom(const IMP::ParticleAdaptor &d) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | explicit |
| clear_children() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| create_clone(Hierarchy d) | IMP::atom::Hierarchy | related |
| create_clone_one(Hierarchy d) | IMP::atom::Hierarchy | related |
| create_fragment(const Hierarchies &ps) | IMP::atom::Hierarchy | related |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator) | IMP::Decorator | protected |
| Decorator() (defined in IMP::Decorator) | IMP::Decorator | protected |
| Decorator(ParticleAdaptor p) (defined in IMP::Decorator) | IMP::Decorator | explicitprotected |
| DecoratorTraits typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| destroy(Hierarchy d) | IMP::atom::Hierarchy | related |
| get_atom_type() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_atom_type_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_bounding_box(const Hierarchy &h) | IMP::atom::Hierarchy | related |
| get_bounding_sphere(const Hierarchy &h) | IMP::atom::Hierarchy | related |
| get_by_type(Hierarchy mhd, GetByType t) | IMP::atom::Hierarchy | related |
| get_changed_key() | IMP::core::Hierarchy | static |
| get_charmm_type() const | IMP::atom::CHARMMAtom | |
| get_charmm_type_key() (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | static |
| get_child(unsigned int i) const | IMP::atom::Hierarchy | |
| get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_child_index() const | IMP::core::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_children_indexes() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_decorator_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_default_decorator_traits() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| get_default_traits() | IMP::core::Hierarchy | static |
| get_element() const | IMP::atom::Atom | |
| get_element_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_input_index() const | IMP::atom::Atom | |
| get_input_index_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_internal_bonds(Hierarchy mhd) | IMP::atom::Hierarchy | related |
| get_is_heterogen(Hierarchy h) | IMP::atom::Hierarchy | related |
| get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | static |
| get_is_setup(Model *m, ParticleIndex pi) | IMP::atom::CHARMMAtom | static |
| get_is_setup(const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::get_is_setup(Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
| get_is_valid(bool print_info=false) const | IMP::atom::Hierarchy | |
| IMP::core::Hierarchy::get_is_valid() const | IMP::Decorator | |
| get_leaves(Hierarchy h) | IMP::atom::Hierarchy | related |
| get_leaves(const Hierarchies &h) | IMP::atom::Hierarchy | related |
| get_model() const | IMP::Decorator | |
| get_number_of_children() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_occupancy() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_occupancy_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_parent() const | IMP::atom::Hierarchy | |
| get_particle() const | IMP::Decorator | |
| get_particle_index() const | IMP::Decorator | |
| get_residue(Hierarchy mhd, unsigned int index) | IMP::atom::Hierarchy | related |
| get_root(Hierarchy h) | IMP::atom::Hierarchy | related |
| get_temperature_factor() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_temperature_factor_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_traits() | IMP::atom::Hierarchy | static |
| Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy(ParticleAdaptor pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy() | IMP::atom::Hierarchy | |
| Hierarchy(IMP::core::Hierarchy h) | IMP::atom::Hierarchy | explicit |
| Hierarchy(::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Hierarchy(const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | explicit |
| operator Particle *() const (defined in IMP::Decorator) | IMP::Decorator | |
| operator ParticleIndex() const (defined in IMP::Decorator) | IMP::Decorator | |
| operator->() const (defined in IMP::Decorator) | IMP::Decorator | |
| remove_child(unsigned int i) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| remove_child(Hierarchy h) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| set_atom_type(AtomType t) | IMP::atom::Atom | |
| set_charmm_type(String t) | IMP::atom::CHARMMAtom | |
| set_input_index(Int t) | IMP::atom::Atom | |
| set_occupancy(double occupancy) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| set_temperature_factor(double tempFactor) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| setup_particle(Model *m, ParticleIndex pi, String charmm_type) | IMP::atom::CHARMMAtom | static |
| setup_particle(IMP::ParticleAdaptor pa, String charmm_type) | IMP::atom::CHARMMAtom | static |
| IMP::atom::Atom::setup_particle(Model *m, ParticleIndex pi, Atom other) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(IMP::ParticleAdaptor pa, Atom other) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(Model *m, ParticleIndex pi, AtomType atom_type) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(IMP::ParticleAdaptor pa, AtomType atom_type) | IMP::atom::Atom | static |
| IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor()) | IMP::atom::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| show(std::ostream &out=std::cout) const (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout) | IMP::atom::Hierarchy | related |
| Value() (defined in IMP::Value) | IMP::Value | protected |