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IMP Reference Guide
develop.d97d4ead1f,2024/11/21
The Integrative Modeling Platform
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A filter for bonds. More...
#include <IMP/atom/BondedPairFilter.h>
Inheritance diagram for IMP::atom::BondedPairFilter:A filter for bonds.
This is to be used with a core::ClosePairsScoreState to exclude all bonded pairs.
Definition at line 23 of file BondedPairFilter.h.
Public Member Functions | |
| BondedPairFilter () | |
| no arguments More... | |
| virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const override |
| Overload this method to specify the inputs. More... | |
| virtual std::string | get_type_name () const override |
| int | get_value (const ParticlePair &a) const |
| Ints | get_value (const ParticlePairsTemp &o) const |
| virtual int | get_value_index (Model *m, const ParticleIndexPair &p) const override |
| Compute the predicate and the derivative if needed. More... | |
| Ints | get_value_index (Model *m, const ParticleIndexPairs &o) const override |
| virtual ::IMP::VersionInfo | get_version_info () const override |
| Get information about the module and version of the object. More... | |
| Public Member Functions inherited from IMP::PairPredicate | |
| PairPredicate (std::string name="PairPredicate %1%") | |
| virtual int | get_value_index_in_batch (Model *m, const ParticleIndexPair &vt) const |
| int | operator() (Model *m, const ParticleIndexPair &vt) const |
| Enable them to be use as functors. More... | |
| virtual void | setup_for_get_value_index_in_batch (Model *) const |
| Public Member Functions inherited from IMP::ParticleInputs | |
| ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
| Get the ModelObjects read when the given list of particles is used. More... | |
| Public Member Functions inherited from IMP::Object | |
| virtual void | clear_caches () |
| CheckLevel | get_check_level () const |
| LogLevel | get_log_level () const |
| void | set_check_level (CheckLevel l) |
| void | set_log_level (LogLevel l) |
| Set the logging level used in this object. More... | |
| void | set_was_used (bool tf) const |
| void | show (std::ostream &out=std::cout) const |
| const std::string & | get_name () const |
| void | set_name (std::string name) |
Additional Inherited Members | |
| Public Types inherited from IMP::PairPredicate | |
| typedef ParticlePair | Argument |
| typedef ParticleIndexPair | IndexArgument |
| Protected Member Functions inherited from IMP::Object | |
| Object (std::string name) | |
| Construct an object with the given name. More... | |
| virtual void | do_destroy () |
| IMP::atom::BondedPairFilter::BondedPairFilter | ( | ) |
no arguments
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overridevirtual |
Overload this method to specify the inputs.
Implements IMP::ParticleInputs.
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overridevirtual |
Compute the predicate and the derivative if needed.
Implements IMP::PairPredicate.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 34 of file BondedPairFilter.h.