IMP Reference Guide
develop.714915d50b,2024/12/07
The Integrative Modeling Platform
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A filter for bonds. More...
#include <IMP/atom/BondedPairFilter.h>
A filter for bonds.
This is to be used with a core::ClosePairsScoreState to exclude all bonded pairs.
Definition at line 23 of file BondedPairFilter.h.
Public Member Functions | |
BondedPairFilter () | |
no arguments More... | |
virtual ModelObjectsTemp | do_get_inputs (Model *m, const ParticleIndexes &pis) const override |
Overload this method to specify the inputs. More... | |
virtual std::string | get_type_name () const override |
int | get_value (const ParticlePair &a) const |
Ints | get_value (const ParticlePairsTemp &o) const |
virtual int | get_value_index (Model *m, const ParticleIndexPair &p) const override |
Compute the predicate and the derivative if needed. More... | |
Ints | get_value_index (Model *m, const ParticleIndexPairs &o) const override |
virtual ::IMP::VersionInfo | get_version_info () const override |
Get information about the module and version of the object. More... | |
Public Member Functions inherited from IMP::PairPredicate | |
PairPredicate (std::string name="PairPredicate %1%") | |
virtual int | get_value_index_in_batch (Model *m, const ParticleIndexPair &vt) const |
int | operator() (Model *m, const ParticleIndexPair &vt) const |
Enable them to be use as functors. More... | |
virtual void | setup_for_get_value_index_in_batch (Model *) const |
Public Member Functions inherited from IMP::ParticleInputs | |
ModelObjectsTemp | get_inputs (Model *m, const ParticleIndexes &pis) const |
Get the ModelObjects read when the given list of particles is used. More... | |
Public Member Functions inherited from IMP::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Additional Inherited Members | |
Public Types inherited from IMP::PairPredicate | |
typedef ParticlePair | Argument |
typedef ParticleIndexPair | IndexArgument |
Protected Member Functions inherited from IMP::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
IMP::atom::BondedPairFilter::BondedPairFilter | ( | ) |
no arguments
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overridevirtual |
Overload this method to specify the inputs.
Implements IMP::ParticleInputs.
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overridevirtual |
Compute the predicate and the derivative if needed.
Implements IMP::PairPredicate.
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overridevirtual |
Get information about the module and version of the object.
Reimplemented from IMP::Object.
Definition at line 34 of file BondedPairFilter.h.