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IMP Reference Guide  develop.33c691def1,2022/08/08
The Integrative Modeling Platform
IMP::atom::Atom Member List

This is the complete list of members for IMP::atom::Atom, including all inherited members.

add_child(Hierarchy o)IMP::atom::Hierarchy
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Atom() (defined in IMP::atom::Atom)IMP::atom::Atom
Atom(::IMP::Model *m,::IMP::ParticleIndex id) (defined in IMP::atom::Atom)IMP::atom::Atom
Atom(const IMP::ParticleAdaptor &d) (defined in IMP::atom::Atom)IMP::atom::Atomexplicit
clear_children() (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
create_clone(Hierarchy d)IMP::atom::Hierarchyrelated
create_clone_one(Hierarchy d)IMP::atom::Hierarchyrelated
create_fragment(const Hierarchies &ps)IMP::atom::Hierarchyrelated
Decorator(Model *m, ParticleIndex pi) (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator() (defined in IMP::Decorator)IMP::Decoratorprotected
Decorator(ParticleAdaptor p) (defined in IMP::Decorator)IMP::Decoratorexplicitprotected
DecoratorTraits typedef (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
destroy(Hierarchy d)IMP::atom::Hierarchyrelated
get_atom_type() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_atom_type_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_bounding_box(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_bounding_sphere(const Hierarchy &h)IMP::atom::Hierarchyrelated
get_by_type(Hierarchy mhd, GetByType t)IMP::atom::Hierarchyrelated
get_changed_key()IMP::core::Hierarchystatic
get_child(unsigned int i) const IMP::atom::Hierarchy
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_child_index() const IMP::core::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children_indexes() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_decorator_traits() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_default_decorator_traits() (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
get_default_traits()IMP::core::Hierarchystatic
get_element() const IMP::atom::Atom
get_element_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_input_index() const IMP::atom::Atom
get_input_index_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_internal_bonds(Hierarchy mhd)IMP::atom::Hierarchyrelated
get_is_heterogen(Hierarchy h)IMP::atom::Hierarchyrelated
get_is_setup(const IMP::ParticleAdaptor &p) (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_is_setup(Model *m, ParticleIndex pi)IMP::atom::Atomstatic
get_is_setup(const IMP::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::get_is_setup(Model *, ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits())IMP::core::Hierarchystatic
get_is_valid(bool print_info=false) const IMP::atom::Hierarchy
IMP::core::Hierarchy::get_is_valid() const IMP::Decorator
get_leaves(Hierarchy h)IMP::atom::Hierarchyrelated
get_leaves(const Hierarchies &h)IMP::atom::Hierarchyrelated
get_model() const IMP::Decorator
get_number_of_children() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_occupancy() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_occupancy_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_parent() const IMP::atom::Hierarchy
get_particle() const IMP::Decorator
get_particle_index() const IMP::Decorator
get_residue(Hierarchy mhd, unsigned int index)IMP::atom::Hierarchyrelated
get_root(Hierarchy h)IMP::atom::Hierarchyrelated
get_temperature_factor() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_temperature_factor_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_traits()IMP::atom::Hierarchystatic
Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy(ParticleAdaptor pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy()IMP::atom::Hierarchy
Hierarchy(IMP::core::Hierarchy h)IMP::atom::Hierarchyexplicit
Hierarchy(::IMP::Model *m,::IMP::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Hierarchy(const IMP::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchyexplicit
operator Particle *() const (defined in IMP::Decorator)IMP::Decorator
operator ParticleIndex() const (defined in IMP::Decorator)IMP::Decorator
operator->() const (defined in IMP::Decorator)IMP::Decorator
remove_child(unsigned int i) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
set_atom_type(AtomType t)IMP::atom::Atom
set_input_index(Int t)IMP::atom::Atom
set_occupancy(double occupancy) (defined in IMP::atom::Atom)IMP::atom::Atom
set_temperature_factor(double tempFactor) (defined in IMP::atom::Atom)IMP::atom::Atom
setup_particle(Model *m, ParticleIndex pi, Atom other)IMP::atom::Atomstatic
setup_particle(IMP::ParticleAdaptor decorator, Atom other)IMP::atom::Atomstatic
setup_particle(Model *m, ParticleIndex pi, AtomType atom_type)IMP::atom::Atomstatic
setup_particle(IMP::ParticleAdaptor decorator, AtomType atom_type)IMP::atom::Atomstatic
IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexesAdaptor children=ParticleIndexesAdaptor())IMP::atom::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::setup_particle(Model *m, ParticleIndex pi, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(Model *m, ParticleIndex pi, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(IMP::ParticleAdaptor d, ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::Atom)IMP::atom::Atom
IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout)IMP::atom::Hierarchyrelated
Value() (defined in IMP::Value)IMP::Valueprotected