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IMP Reference Guide
develop.63b38c487d,2024/12/21
The Integrative Modeling Platform
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distance metrics More...
#include <IMP/atom/atom_config.h>#include <IMP/core/XYZ.h>#include "Hierarchy.h"#include "Selection.h"#include <IMP/algebra/distance.h>#include "IMP/base_types.h"
Include dependency graph for atom/distance.h: This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Namespaces | |
| IMP | |
| Base functionality and abstract base classes for representation, scoring and sampling. | |
| IMP::atom | |
| Functionality for loading, creating, manipulating and scoring atomic structures. | |
Functions | |
| FloatPair | IMP::atom::get_component_placement_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2) |
| Measure the difference between two placements of the same set of points. More... | |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_drms (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_drmsd (const Vector3DsOrXYZs0 &m0, const Vector3DsOrXYZs1 &m1) |
| Calculate distance the root mean square deviation between two sets of 3D points. More... | |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_drmsd_Q (const Vector3DsOrXYZs0 &m0, const Vector3DsOrXYZs1 &m1, double threshold) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_native_overlap (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2, double threshold) |
| Computes the native overlap between two sets of 3D points. More... | |
| double | IMP::atom::get_pairwise_rmsd_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2) |
| Measure the RMSD between two placements of the same set of points. More... | |
| FloatPair | IMP::atom::get_placement_score (const core::XYZs &source, const core::XYZs &target) |
| Measure the difference between two placements of the same set of points. More... | |
| double | IMP::atom::get_radius_of_gyration (const ParticlesTemp &ps, bool weighted=true) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_rigid_bodies_drms (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2, const IMP::IntRanges &ranges) |
| DRMS between two sets of rigid bodies. More... | |
| double | IMP::atom::get_rmsd (const core::XYZs &s0, const core::XYZs &s1) |
| double | IMP::atom::get_rmsd (const Selection &s0, const Selection &s1) |
| double | IMP::atom::get_rmsd_transforming_first (const IMP::algebra::Transformation3D &tr, const core::XYZs &s0, const core::XYZs &s1) |
| double | IMP::atom::get_rmsd_transforming_first (const algebra::Transformation3D &tr, const Selection &s0, const Selection &s1) |
distance metrics
Copyright 2007-2022 IMP Inventors. All rights reserved.
Definition in file atom/distance.h.