14 from sys
import version_info
as _swig_python_version_info
18 import builtins
as __builtin__
24 strthis =
"proxy of " + self.this.__repr__()
25 except __builtin__.Exception:
27 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
30 def _swig_setattr_nondynamic_instance_variable(set):
31 def set_instance_attr(self, name, value):
33 set(self, name, value)
34 elif name ==
"thisown":
36 elif hasattr(self, name)
and isinstance(getattr(type(self), name), property):
37 set(self, name, value)
39 raise AttributeError(
"You cannot add instance attributes to %s" % self)
40 return set_instance_attr
43 def _swig_setattr_nondynamic_class_variable(set):
44 def set_class_attr(cls, name, value):
45 if hasattr(cls, name)
and not isinstance(getattr(cls, name), property):
48 raise AttributeError(
"You cannot add class attributes to %s" % cls)
52 def _swig_add_metaclass(metaclass):
53 """Class decorator for adding a metaclass to a SWIG wrapped class - a slimmed down version of six.add_metaclass"""
55 return metaclass(cls.__name__, cls.__bases__, cls.__dict__.copy())
59 class _SwigNonDynamicMeta(type):
60 """Meta class to enforce nondynamic attributes (no new attributes) for a class"""
61 __setattr__ = _swig_setattr_nondynamic_class_variable(type.__setattr__)
66 class IMP_KERNEL_SwigPyIterator(object):
67 r"""Proxy of C++ swig::IMP_KERNEL_SwigPyIterator class."""
69 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
71 def __init__(self, *args, **kwargs):
72 raise AttributeError(
"No constructor defined - class is abstract")
74 __swig_destroy__ = _IMP_kernel.delete_IMP_KERNEL_SwigPyIterator
77 r"""value(IMP_KERNEL_SwigPyIterator self) -> PyObject *"""
78 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_value(self)
81 r"""incr(IMP_KERNEL_SwigPyIterator self, size_t n=1) -> IMP_KERNEL_SwigPyIterator"""
82 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_incr(self, n)
85 r"""decr(IMP_KERNEL_SwigPyIterator self, size_t n=1) -> IMP_KERNEL_SwigPyIterator"""
86 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_decr(self, n)
88 def distance(self, x):
89 r"""distance(IMP_KERNEL_SwigPyIterator self, IMP_KERNEL_SwigPyIterator x) -> ptrdiff_t"""
90 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_distance(self, x)
93 r"""equal(IMP_KERNEL_SwigPyIterator self, IMP_KERNEL_SwigPyIterator x) -> bool"""
94 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_equal(self, x)
97 r"""copy(IMP_KERNEL_SwigPyIterator self) -> IMP_KERNEL_SwigPyIterator"""
98 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_copy(self)
101 r"""next(IMP_KERNEL_SwigPyIterator self) -> PyObject *"""
102 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_next(self)
105 r"""__next__(IMP_KERNEL_SwigPyIterator self) -> PyObject *"""
106 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___next__(self)
109 r"""previous(IMP_KERNEL_SwigPyIterator self) -> PyObject *"""
110 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_previous(self)
112 def advance(self, n):
113 r"""advance(IMP_KERNEL_SwigPyIterator self, ptrdiff_t n) -> IMP_KERNEL_SwigPyIterator"""
114 return _IMP_kernel.IMP_KERNEL_SwigPyIterator_advance(self, n)
117 r"""__eq__(IMP_KERNEL_SwigPyIterator self, IMP_KERNEL_SwigPyIterator x) -> bool"""
118 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___eq__(self, x)
121 r"""__ne__(IMP_KERNEL_SwigPyIterator self, IMP_KERNEL_SwigPyIterator x) -> bool"""
122 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___ne__(self, x)
124 def __iadd__(self, n):
125 r"""__iadd__(IMP_KERNEL_SwigPyIterator self, ptrdiff_t n) -> IMP_KERNEL_SwigPyIterator"""
126 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___iadd__(self, n)
128 def __isub__(self, n):
129 r"""__isub__(IMP_KERNEL_SwigPyIterator self, ptrdiff_t n) -> IMP_KERNEL_SwigPyIterator"""
130 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___isub__(self, n)
132 def __add__(self, n):
133 r"""__add__(IMP_KERNEL_SwigPyIterator self, ptrdiff_t n) -> IMP_KERNEL_SwigPyIterator"""
134 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___add__(self, n)
136 def __sub__(self, *args):
138 __sub__(IMP_KERNEL_SwigPyIterator self, ptrdiff_t n) -> IMP_KERNEL_SwigPyIterator
139 __sub__(IMP_KERNEL_SwigPyIterator self, IMP_KERNEL_SwigPyIterator x) -> ptrdiff_t
141 return _IMP_kernel.IMP_KERNEL_SwigPyIterator___sub__(self, *args)
146 _IMP_kernel.IMP_KERNEL_SwigPyIterator_swigregister(IMP_KERNEL_SwigPyIterator)
153 IMP_DEBUG = _IMP_kernel.IMP_DEBUG
155 IMP_RELEASE = _IMP_kernel.IMP_RELEASE
157 IMP_SILENT = _IMP_kernel.IMP_SILENT
159 IMP_PROGRESS = _IMP_kernel.IMP_PROGRESS
161 IMP_TERSE = _IMP_kernel.IMP_TERSE
163 IMP_VERBOSE = _IMP_kernel.IMP_VERBOSE
165 IMP_MEMORY = _IMP_kernel.IMP_MEMORY
167 IMP_NONE = _IMP_kernel.IMP_NONE
169 IMP_USAGE = _IMP_kernel.IMP_USAGE
171 IMP_INTERNAL = _IMP_kernel.IMP_INTERNAL
173 IMP_KERNEL_HAS_LOG4CXX = _IMP_kernel.IMP_KERNEL_HAS_LOG4CXX
175 IMP_COMPILER_HAS_CEREAL_RAW_POINTER = _IMP_kernel.IMP_COMPILER_HAS_CEREAL_RAW_POINTER
177 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_kernel.IMP_COMPILER_HAS_DEBUG_VECTOR
179 IMP_COMPILER_HAS_RANDOM_SHUFFLE = _IMP_kernel.IMP_COMPILER_HAS_RANDOM_SHUFFLE
181 IMP_COMPILER_HAS_THREE_WAY = _IMP_kernel.IMP_COMPILER_HAS_THREE_WAY
183 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_kernel.IMP_KERNEL_HAS_BOOST_RANDOM
185 IMP_KERNEL_HAS_NUMPY = _IMP_kernel.IMP_KERNEL_HAS_NUMPY
187 IMP_KERNEL_HAS_GPERFTOOLS = _IMP_kernel.IMP_KERNEL_HAS_GPERFTOOLS
189 IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER = _IMP_kernel.IMP_KERNEL_HAS_TCMALLOC_HEAPCHECKER
191 IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER = _IMP_kernel.IMP_KERNEL_HAS_TCMALLOC_HEAPPROFILER
193 IMPKERNEL_SHOW_WARNINGS = _IMP_kernel.IMPKERNEL_SHOW_WARNINGS
197 class _DirectorObjects:
198 """@internal Simple class to keep references to director objects
199 to prevent premature deletion."""
202 def register(self, obj):
203 """Take a reference to a director object; will only work for
204 refcounted C++ classes"""
205 if hasattr(obj,
'get_ref_count'):
206 self._objects.append(obj)
208 """Only drop our reference and allow cleanup by Python if no other
209 Python references exist (we hold 3 references: one in self._objects,
210 one in x, and one in the argument list for getrefcount) *and* no
211 other C++ references exist (the Python object always holds one)"""
212 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
213 or x.get_ref_count() > 1]
217 def get_object_count(self):
218 """Get number of director objects (useful for testing only)"""
219 return len(self._objects)
220 _director_objects = _DirectorObjects()
222 DEFAULT_CHECK = _IMP_kernel.DEFAULT_CHECK
224 NONE = _IMP_kernel.NONE
226 USAGE = _IMP_kernel.USAGE
228 USAGE_AND_INTERNAL = _IMP_kernel.USAGE_AND_INTERNAL
232 r"""set_check_level(IMP::CheckLevel tf)"""
233 return _IMP_kernel.set_check_level(tf)
236 r"""get_check_level() -> IMP::CheckLevel"""
237 return _IMP_kernel.get_check_level()
239 from _IMP_kernel
import Exception, InternalException, ModelException, EventException
240 from _IMP_kernel
import UsageException, IndexException, IOException, ValueException
241 from _IMP_kernel
import TypeException
243 class _ostream(object):
244 r"""Proxy of C++ std::ostream class."""
246 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
248 def __init__(self, *args, **kwargs):
249 raise AttributeError(
"No constructor defined")
250 __repr__ = _swig_repr
252 def write(self, osa_buf):
253 r"""write(_ostream self, char const * osa_buf)"""
254 return _IMP_kernel._ostream_write(self, osa_buf)
257 _IMP_kernel._ostream_swigregister(_ostream)
258 IMP_C_OPEN_BINARY = _IMP_kernel.IMP_C_OPEN_BINARY
261 from .
import _list_util
264 _models_set = weakref.WeakSet()
266 def _models_set_get(m):
267 for x
in _models_set:
272 _raii_types.append(
"SetLogState")
275 _raii_types.append(
"SetNumberOfThreads")
278 _raii_types.append(
"SetCheckState")
281 _object_types.append(
"Object")
284 def _object_cast_to_Object(o):
285 r"""_object_cast_to_Object(Object * o) -> Object"""
286 return _IMP_kernel._object_cast_to_Object(o)
288 _object_types.append(
"_TestObject")
291 def _object_cast_to__TestObject(o):
292 r"""_object_cast_to__TestObject(Object * o) -> _TestObject"""
293 return _IMP_kernel._object_cast_to__TestObject(o)
296 _plural_types.append(
"VersionInfos")
297 _value_types.append(
"VersionInfo")
300 _raii_types.append(
"CreateLogContext")
303 _raii_types.append(
"WarningContext")
306 _raii_types.append(
"SetLogTarget")
310 _plural_types.append(
"_TestValues")
311 _value_types.append(
"_TestValue")
315 _plural_types.append(
"Floats")
316 _value_types.append(
"Float")
320 _plural_types.append(
"Ints")
321 _value_types.append(
"Int")
325 _plural_types.append(
"Strings")
326 _value_types.append(
"String")
330 _plural_types.append(
"_Protections")
331 _value_types.append(
"_Protection")
333 class _InputAdaptor(object):
334 r"""Proxy of C++ IMP::InputAdaptor class."""
336 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
338 def __init__(self, *args, **kwargs):
339 raise AttributeError(
"No constructor defined")
340 __repr__ = _swig_repr
342 def __getstate__(self):
343 raise NotImplementedError(str(self.__class__)
344 +
" does not support serialization")
346 __swig_destroy__ = _IMP_kernel.delete__InputAdaptor
349 _IMP_kernel._InputAdaptor_swigregister(_InputAdaptor)
350 class _NonCopyable(object):
351 r"""Proxy of C++ IMP::NonCopyable class."""
353 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
355 def __init__(self, *args, **kwargs):
356 raise AttributeError(
"No constructor defined")
357 __repr__ = _swig_repr
358 __swig_destroy__ = _IMP_kernel.delete__NonCopyable
361 _IMP_kernel._NonCopyable_swigregister(_NonCopyable)
362 class _RAII(_NonCopyable):
363 r"""Proxy of C++ IMP::RAII class."""
365 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
367 def __init__(self, *args, **kwargs):
368 raise AttributeError(
"No constructor defined")
369 __repr__ = _swig_repr
370 __swig_destroy__ = _IMP_kernel.delete__RAII
373 _IMP_kernel._RAII_swigregister(_RAII)
374 class _Value(object):
375 r"""Proxy of C++ IMP::Value class."""
377 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
379 def __init__(self, *args, **kwargs):
380 raise AttributeError(
"No constructor defined")
381 __repr__ = _swig_repr
383 def __getstate__(self):
384 raise NotImplementedError(str(self.__class__)
385 +
" does not support serialization")
387 __swig_destroy__ = _IMP_kernel.delete__Value
390 _IMP_kernel._Value_swigregister(_Value)
393 r"""get_executable_name() -> std::string"""
394 return _IMP_kernel.get_executable_name()
398 setup_from_argv(IMP::Strings const & argv, std::string description)
399 setup_from_argv(IMP::Strings const & argv, std::string description, std::string positional_description, int num_positional) -> IMP::Strings
401 return _IMP_kernel.setup_from_argv(*args)
404 r"""add_string_flag(std::string name, std::string default_value, std::string description)"""
405 return _IMP_kernel.add_string_flag(name, default_value, description)
408 r"""get_string_flag(std::string name) -> std::string"""
409 return _IMP_kernel.get_string_flag(name)
412 r"""add_int_flag(std::string name, size_t default_value, std::string description)"""
413 return _IMP_kernel.add_int_flag(name, default_value, description)
416 r"""get_int_flag(std::string name) -> size_t"""
417 return _IMP_kernel.get_int_flag(name)
420 r"""add_bool_flag(std::string name, std::string description)"""
421 return _IMP_kernel.add_bool_flag(name, description)
424 r"""get_bool_flag(std::string name) -> bool"""
425 return _IMP_kernel.get_bool_flag(name)
428 r"""add_float_flag(std::string name, double default_value, std::string description)"""
429 return _IMP_kernel.add_float_flag(name, default_value, description)
432 r"""get_float_flag(std::string name) -> double"""
433 return _IMP_kernel.get_float_flag(name)
436 r"""write_help(_ostream out=std::cerr)"""
437 return _IMP_kernel.write_help(*args)
440 r"""get_is_quick_test() -> bool"""
441 return _IMP_kernel.get_is_quick_test()
442 DEFAULT = _IMP_kernel.DEFAULT
444 SILENT = _IMP_kernel.SILENT
446 WARNING = _IMP_kernel.WARNING
448 PROGRESS = _IMP_kernel.PROGRESS
450 TERSE = _IMP_kernel.TERSE
452 VERBOSE = _IMP_kernel.VERBOSE
454 MEMORY = _IMP_kernel.MEMORY
456 ALL_LOG = _IMP_kernel.ALL_LOG
458 class VersionInfo(_Value):
459 r"""Proxy of C++ IMP::VersionInfo class."""
461 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
463 def __init__(self, *args):
465 __init__(VersionInfo self, std::string module, std::string version) -> VersionInfo
466 __init__(VersionInfo self) -> VersionInfo
468 _IMP_kernel.VersionInfo_swiginit(self, _IMP_kernel.new_VersionInfo(*args))
470 def get_module(self):
471 r"""get_module(VersionInfo self) -> std::string"""
472 return _IMP_kernel.VersionInfo_get_module(self)
474 def get_version(self):
475 r"""get_version(VersionInfo self) -> std::string"""
476 return _IMP_kernel.VersionInfo_get_version(self)
478 def show(self, *args):
479 r"""show(VersionInfo self, _ostream out=std::cout)"""
480 return _IMP_kernel.VersionInfo_show(self, *args)
482 def __cmp__(self, o):
483 r"""__cmp__(VersionInfo self, VersionInfo o) -> int"""
484 return _IMP_kernel.VersionInfo___cmp__(self, o)
487 r"""__eq__(VersionInfo self, VersionInfo o) -> bool"""
488 return _IMP_kernel.VersionInfo___eq__(self, o)
491 r"""__ne__(VersionInfo self, VersionInfo o) -> bool"""
492 return _IMP_kernel.VersionInfo___ne__(self, o)
495 r"""__lt__(VersionInfo self, VersionInfo o) -> bool"""
496 return _IMP_kernel.VersionInfo___lt__(self, o)
499 r"""__gt__(VersionInfo self, VersionInfo o) -> bool"""
500 return _IMP_kernel.VersionInfo___gt__(self, o)
503 r"""__ge__(VersionInfo self, VersionInfo o) -> bool"""
504 return _IMP_kernel.VersionInfo___ge__(self, o)
507 r"""__le__(VersionInfo self, VersionInfo o) -> bool"""
508 return _IMP_kernel.VersionInfo___le__(self, o)
511 r"""__str__(VersionInfo self) -> std::string"""
512 return _IMP_kernel.VersionInfo___str__(self)
515 r"""__repr__(VersionInfo self) -> std::string"""
516 return _IMP_kernel.VersionInfo___repr__(self)
518 def _get_as_binary(self):
519 r"""_get_as_binary(VersionInfo self) -> PyObject *"""
520 return _IMP_kernel.VersionInfo__get_as_binary(self)
522 def _set_from_binary(self, p):
523 r"""_set_from_binary(VersionInfo self, PyObject * p)"""
524 return _IMP_kernel.VersionInfo__set_from_binary(self, p)
526 def __getstate__(self):
527 p = self._get_as_binary()
528 if len(self.__dict__) > 1:
529 d = self.__dict__.copy()
534 def __setstate__(self, p):
535 if not hasattr(self,
'this'):
537 if isinstance(p, tuple):
539 self.__dict__.update(d)
540 return self._set_from_binary(p)
542 __swig_destroy__ = _IMP_kernel.delete_VersionInfo
545 _IMP_kernel.VersionInfo_swigregister(VersionInfo)
546 class TextOutput(_InputAdaptor):
547 r"""Proxy of C++ IMP::TextOutput class."""
549 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
550 __repr__ = _swig_repr
552 def __init__(self, *args):
554 __init__(TextOutput self, int arg2) -> TextOutput
555 __init__(TextOutput self, double arg2) -> TextOutput
556 __init__(TextOutput self, char const * c, bool append=False) -> TextOutput
557 __init__(TextOutput self, IMP::TextProxy< std::ostream > p) -> TextOutput
558 __init__(TextOutput self) -> TextOutput
559 __init__(TextOutput self, std::string file_name, bool append=False) -> TextOutput
561 _IMP_kernel.TextOutput_swiginit(self, _IMP_kernel.new_TextOutput(*args))
563 def show(self, *args):
564 r"""show(TextOutput self, _ostream out=std::cout)"""
565 return _IMP_kernel.TextOutput_show(self, *args)
568 r"""get_name(TextOutput self) -> std::string"""
569 return _IMP_kernel.TextOutput_get_name(self)
570 __swig_destroy__ = _IMP_kernel.delete_TextOutput
573 _IMP_kernel.TextOutput_swigregister(TextOutput)
574 class TextInput(_InputAdaptor):
575 r"""Proxy of C++ IMP::TextInput class."""
577 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
578 __repr__ = _swig_repr
580 def __init__(self, *args):
582 __init__(TextInput self, int arg2) -> TextInput
583 __init__(TextInput self, double arg2) -> TextInput
584 __init__(TextInput self, char const * c) -> TextInput
585 __init__(TextInput self, IMP::TextProxy< std::istream > p) -> TextInput
586 __init__(TextInput self) -> TextInput
587 __init__(TextInput self, std::string file_name) -> TextInput
589 _IMP_kernel.TextInput_swiginit(self, _IMP_kernel.new_TextInput(*args))
591 def show(self, *args):
592 r"""show(TextInput self, _ostream out=std::cout)"""
593 return _IMP_kernel.TextInput_show(self, *args)
596 r"""get_name(TextInput self) -> std::string"""
597 return _IMP_kernel.TextInput_get_name(self)
598 __swig_destroy__ = _IMP_kernel.delete_TextInput
601 _IMP_kernel.TextInput_swigregister(TextInput)
602 class SetLogTarget(_RAII):
603 r"""Proxy of C++ IMP::SetLogTarget class."""
605 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
607 def __init__(self, *args):
609 __init__(SetLogTarget self) -> SetLogTarget
610 __init__(SetLogTarget self, TextOutput to) -> SetLogTarget
612 _IMP_kernel.SetLogTarget_swiginit(self, _IMP_kernel.new_SetLogTarget(*args))
615 r"""set(SetLogTarget self, TextOutput to)"""
616 return _IMP_kernel.SetLogTarget_set(self, to)
619 r"""reset(SetLogTarget self)"""
620 return _IMP_kernel.SetLogTarget_reset(self)
621 __swig_destroy__ = _IMP_kernel.delete_SetLogTarget
623 def show(self, *args):
624 r"""show(SetLogTarget self, _ostream out=std::cout)"""
625 return _IMP_kernel.SetLogTarget_show(self, *args)
629 def __exit__(self, exc_type, exc_val, exc_tb):
635 r"""__str__(SetLogTarget self) -> std::string"""
636 return _IMP_kernel.SetLogTarget___str__(self)
639 r"""__repr__(SetLogTarget self) -> std::string"""
640 return _IMP_kernel.SetLogTarget___repr__(self)
643 _IMP_kernel.SetLogTarget_swigregister(SetLogTarget)
646 r"""create_temporary_file(std::string prefix="imp_temp", std::string suffix="") -> TextOutput"""
647 return _IMP_kernel.create_temporary_file(*args)
650 r"""create_temporary_file_name(std::string prefix="imp_temp", std::string suffix="") -> std::string"""
651 return _IMP_kernel.create_temporary_file_name(*args)
654 r"""get_relative_path(std::string base, std::string relative) -> std::string"""
655 return _IMP_kernel.get_relative_path(base, relative)
658 r"""get_absolute_path(std::string file) -> std::string"""
659 return _IMP_kernel.get_absolute_path(file)
661 def push_log_context(functionname, object):
662 r"""push_log_context(char const * functionname, void const * object)"""
663 return _IMP_kernel.push_log_context(functionname, object)
665 def pop_log_context():
666 r"""pop_log_context()"""
667 return _IMP_kernel.pop_log_context()
671 add_to_log(std::string to_write)
672 add_to_log(IMP::LogLevel level, std::string to_write)
674 return _IMP_kernel.add_to_log(*args)
677 r"""set_log_level(IMP::LogLevel l)"""
678 return _IMP_kernel.set_log_level(l)
681 r"""set_log_timer(bool tb)"""
682 return _IMP_kernel.set_log_timer(tb)
685 r"""reset_log_timer()"""
686 return _IMP_kernel.reset_log_timer()
689 r"""get_log_level() -> IMP::LogLevel"""
690 return _IMP_kernel.get_log_level()
693 r"""set_progress_display(std::string description, unsigned int steps)"""
694 return _IMP_kernel.set_progress_display(description, steps)
697 r"""add_to_progress_display(unsigned int step=1)"""
698 return _IMP_kernel.add_to_progress_display(step)
699 class Object(_NonCopyable):
700 r"""Proxy of C++ IMP::Object class."""
702 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
704 def __init__(self, name):
705 r"""__init__(Object self, std::string name) -> Object"""
706 if self.__class__ == Object:
710 _IMP_kernel.Object_swiginit(self, _IMP_kernel.new_Object(_self, name))
712 if self.__class__ != Object:
713 _director_objects.register(self)
717 __swig_destroy__ = _IMP_kernel.delete_Object
720 r"""__hash__(Object self) -> std::size_t"""
721 return _IMP_kernel.Object___hash__(self)
724 r"""set_log_level(Object self, IMP::LogLevel l)"""
725 return _IMP_kernel.Object_set_log_level(self, l)
728 r"""set_check_level(Object self, IMP::CheckLevel l)"""
729 return _IMP_kernel.Object_set_check_level(self, l)
732 r"""get_log_level(Object self) -> IMP::LogLevel"""
733 return _IMP_kernel.Object_get_log_level(self)
736 r"""get_check_level(Object self) -> IMP::CheckLevel"""
737 return _IMP_kernel.Object_get_check_level(self)
739 def get_version_info(self):
740 r"""get_version_info(Object self) -> VersionInfo"""
741 return _IMP_kernel.Object_get_version_info(self)
744 r"""get_name(Object self) -> std::string const &"""
745 return _IMP_kernel.Object_get_name(self)
747 def set_name(self, name):
748 r"""set_name(Object self, std::string name)"""
749 return _IMP_kernel.Object_set_name(self, name)
751 def get_type_name(self):
752 r"""get_type_name(Object self) -> std::string"""
753 return _IMP_kernel.Object_get_type_name(self)
755 def set_was_used(self, tf):
756 r"""set_was_used(Object self, bool tf)"""
757 return _IMP_kernel.Object_set_was_used(self, tf)
759 def show(self, *args):
760 r"""show(Object self, _ostream out=std::cout)"""
761 return _IMP_kernel.Object_show(self, *args)
763 def get_string(self):
764 r"""get_string(Object self) -> std::string"""
765 return _IMP_kernel.Object_get_string(self)
767 def _on_destruction(self):
768 r"""_on_destruction(Object self)"""
769 return _IMP_kernel.Object__on_destruction(self)
771 def get_is_valid(self):
772 r"""get_is_valid(Object self) -> bool"""
773 return _IMP_kernel.Object_get_is_valid(self)
775 def get_ref_count(self):
776 r"""get_ref_count(Object self) -> unsigned int"""
777 return _IMP_kernel.Object_get_ref_count(self)
780 def get_number_of_live_objects():
781 r"""get_number_of_live_objects() -> unsigned int"""
782 return _IMP_kernel.Object_get_number_of_live_objects()
784 def get_is_shared(self):
785 r"""get_is_shared(Object self) -> bool"""
786 return _IMP_kernel.Object_get_is_shared(self)
788 def clear_caches(self):
789 r"""clear_caches(Object self)"""
790 return _IMP_kernel.Object_clear_caches(self)
792 def do_destroy(self):
793 r"""do_destroy(Object self)"""
794 return _IMP_kernel.Object_do_destroy(self)
796 def __getstate__(self):
797 raise NotImplementedError(str(self.__class__)
798 +
" does not support serialization")
802 r"""__eq__(Object self, Object o) -> bool"""
803 return _IMP_kernel.Object___eq__(self, o)
806 r"""__ne__(Object self, Object o) -> bool"""
807 return _IMP_kernel.Object___ne__(self, o)
810 r"""__le__(Object self, Object o) -> bool"""
811 return _IMP_kernel.Object___le__(self, o)
814 r"""__lt__(Object self, Object o) -> bool"""
815 return _IMP_kernel.Object___lt__(self, o)
818 r"""__ge__(Object self, Object o) -> bool"""
819 return _IMP_kernel.Object___ge__(self, o)
822 r"""__gt__(Object self, Object o) -> bool"""
823 return _IMP_kernel.Object___gt__(self, o)
826 r"""__str__(Object self) -> std::string"""
827 return _IMP_kernel.Object___str__(self)
830 r"""__repr__(Object self) -> std::string"""
831 return _IMP_kernel.Object___repr__(self)
835 return _object_cast_to_Object(o)
837 def __disown__(self):
839 _IMP_kernel.disown_Object(self)
840 return weakref.proxy(self)
843 _IMP_kernel.Object_swigregister(Object)
844 class SetLogState(_RAII):
845 r"""Proxy of C++ IMP::SetLogState class."""
847 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
850 r"""reset(SetLogState self)"""
851 return _IMP_kernel.SetLogState_reset(self)
852 __swig_destroy__ = _IMP_kernel.delete_SetLogState
854 def show(self, *args):
855 r"""show(SetLogState self, _ostream out=std::cout)"""
856 return _IMP_kernel.SetLogState_show(self, *args)
858 def __init__(self, *args):
860 __init__(SetLogState self) -> SetLogState
861 __init__(SetLogState self, Object o, IMP::LogLevel l) -> SetLogState
862 __init__(SetLogState self, IMP::LogLevel l) -> SetLogState
864 _IMP_kernel.SetLogState_swiginit(self, _IMP_kernel.new_SetLogState(*args))
866 def set(self, *args):
868 set(SetLogState self, Object o, IMP::LogLevel l)
869 set(SetLogState self, IMP::LogLevel l)
871 return _IMP_kernel.SetLogState_set(self, *args)
875 def __exit__(self, exc_type, exc_val, exc_tb):
881 r"""__str__(SetLogState self) -> std::string"""
882 return _IMP_kernel.SetLogState___str__(self)
885 r"""__repr__(SetLogState self) -> std::string"""
886 return _IMP_kernel.SetLogState___repr__(self)
889 _IMP_kernel.SetLogState_swigregister(SetLogState)
890 class WarningContext(object):
891 r"""Proxy of C++ IMP::WarningContext class."""
893 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
894 data_ = property(_IMP_kernel.WarningContext_data__get, _IMP_kernel.WarningContext_data__set, doc=
r"""data_ : boost::unordered_set<(std::string)>""")
896 def add_warning(self, key, warning):
897 r"""add_warning(WarningContext self, std::string key, std::string warning)"""
898 return _IMP_kernel.WarningContext_add_warning(self, key, warning)
900 def clear_warnings(self):
901 r"""clear_warnings(WarningContext self)"""
902 return _IMP_kernel.WarningContext_clear_warnings(self)
904 def dump_warnings(self):
905 r"""dump_warnings(WarningContext self)"""
906 return _IMP_kernel.WarningContext_dump_warnings(self)
907 __swig_destroy__ = _IMP_kernel.delete_WarningContext
909 def show(self, *args):
910 r"""show(WarningContext self, _ostream out=std::cout)"""
911 return _IMP_kernel.WarningContext_show(self, *args)
915 def __exit__(self, exc_type, exc_val, exc_tb):
921 r"""__str__(WarningContext self) -> std::string"""
922 return _IMP_kernel.WarningContext___str__(self)
925 r"""__repr__(WarningContext self) -> std::string"""
926 return _IMP_kernel.WarningContext___repr__(self)
929 r"""__init__(WarningContext self) -> WarningContext"""
930 _IMP_kernel.WarningContext_swiginit(self, _IMP_kernel.new_WarningContext())
933 _IMP_kernel.WarningContext_swigregister(WarningContext)
934 class CreateLogContext(_RAII):
935 r"""Proxy of C++ IMP::CreateLogContext class."""
937 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
939 def __init__(self, *args):
941 __init__(CreateLogContext self, std::string fname, Object object=None) -> CreateLogContext
942 __init__(CreateLogContext self) -> CreateLogContext
943 __init__(CreateLogContext self, char const * fname, Object object=None) -> CreateLogContext
945 _IMP_kernel.CreateLogContext_swiginit(self, _IMP_kernel.new_CreateLogContext(*args))
947 def set(self, fname, object=None):
948 r"""set(CreateLogContext self, char const * fname, Object object=None)"""
949 return _IMP_kernel.CreateLogContext_set(self, fname, object)
952 r"""reset(CreateLogContext self)"""
953 return _IMP_kernel.CreateLogContext_reset(self)
954 __swig_destroy__ = _IMP_kernel.delete_CreateLogContext
956 def show(self, *args):
957 r"""show(CreateLogContext self, _ostream out=std::cout)"""
958 return _IMP_kernel.CreateLogContext_show(self, *args)
962 def __exit__(self, exc_type, exc_val, exc_tb):
968 r"""__str__(CreateLogContext self) -> std::string"""
969 return _IMP_kernel.CreateLogContext___str__(self)
972 r"""__repr__(CreateLogContext self) -> std::string"""
973 return _IMP_kernel.CreateLogContext___repr__(self)
976 _IMP_kernel.CreateLogContext_swigregister(CreateLogContext)
977 class SetCheckState(_RAII):
978 r"""Proxy of C++ IMP::SetCheckState class."""
980 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
983 r"""reset(SetCheckState self)"""
984 return _IMP_kernel.SetCheckState_reset(self)
985 __swig_destroy__ = _IMP_kernel.delete_SetCheckState
987 def show(self, *args):
988 r"""show(SetCheckState self, _ostream out=std::cout)"""
989 return _IMP_kernel.SetCheckState_show(self, *args)
991 def __init__(self, *args):
993 __init__(SetCheckState self) -> SetCheckState
994 __init__(SetCheckState self, Object o, IMP::CheckLevel l) -> SetCheckState
995 __init__(SetCheckState self, IMP::CheckLevel l) -> SetCheckState
997 _IMP_kernel.SetCheckState_swiginit(self, _IMP_kernel.new_SetCheckState(*args))
999 def set(self, *args):
1001 set(SetCheckState self, Object o, IMP::CheckLevel l)
1002 set(SetCheckState self, IMP::CheckLevel l)
1004 return _IMP_kernel.SetCheckState_set(self, *args)
1006 def __enter__(self):
1008 def __exit__(self, exc_type, exc_val, exc_tb):
1014 r"""__str__(SetCheckState self) -> std::string"""
1015 return _IMP_kernel.SetCheckState___str__(self)
1018 r"""__repr__(SetCheckState self) -> std::string"""
1019 return _IMP_kernel.SetCheckState___repr__(self)
1022 _IMP_kernel.SetCheckState_swigregister(SetCheckState)
1025 r"""get_unique_name(std::string templ) -> std::string"""
1026 return _IMP_kernel.get_unique_name(templ)
1029 r"""get_copyright() -> std::string"""
1030 return _IMP_kernel.get_copyright()
1031 class _Protection(object):
1032 r"""Proxy of C++ IMP::internal::_Protection class."""
1034 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1036 def __init__(self, *args, **kwargs):
1037 raise AttributeError(
"No constructor defined")
1039 def show(self, *args):
1040 r"""show(_Protection self, _ostream out=std::cout)"""
1041 return _IMP_kernel._Protection_show(self, *args)
1044 r"""__str__(_Protection self) -> std::string"""
1045 return _IMP_kernel._Protection___str__(self)
1048 r"""__repr__(_Protection self) -> std::string"""
1049 return _IMP_kernel._Protection___repr__(self)
1050 __swig_destroy__ = _IMP_kernel.delete__Protection
1053 _IMP_kernel._Protection_swigregister(_Protection)
1057 return _IMP_kernel._test_log()
1059 def _test_intranges(ips):
1060 r"""_test_intranges(IMP::IntRanges const & ips) -> int"""
1061 return _IMP_kernel._test_intranges(ips)
1063 def _test_intrange(*args):
1065 _test_intrange(IMP::IntRange const & ips) -> IMP::IntRange
1066 _test_intrange() -> IMP::IntRange
1068 return _IMP_kernel._test_intrange(*args)
1071 r"""_test_ifile(TextInput a) -> std::string"""
1072 return _IMP_kernel._test_ifile(a)
1075 r"""_test_ofile(TextOutput a) -> std::string"""
1076 return _IMP_kernel._test_ofile(a)
1078 def _test_ifile_overloaded(*args):
1080 _test_ifile_overloaded(TextInput a, int i) -> std::string
1081 _test_ifile_overloaded(TextInput a, std::string st) -> std::string
1083 return _IMP_kernel._test_ifile_overloaded(*args)
1085 def _test_ofile_overloaded(*args):
1087 _test_ofile_overloaded(TextOutput a, int i) -> std::string
1088 _test_ofile_overloaded(TextOutput a, std::string st) -> std::string
1090 return _IMP_kernel._test_ofile_overloaded(*args)
1091 class _TestValue(object):
1092 r"""Proxy of C++ IMP::internal::_TestValue class."""
1094 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1096 def __init__(self, i):
1097 r"""__init__(_TestValue self, int i) -> _TestValue"""
1098 _IMP_kernel._TestValue_swiginit(self, _IMP_kernel.new__TestValue(i))
1100 def show(self, *args):
1101 r"""show(_TestValue self, _ostream out=std::cout)"""
1102 return _IMP_kernel._TestValue_show(self, *args)
1104 def __cmp__(self, o):
1105 r"""__cmp__(_TestValue self, _TestValue o) -> int"""
1106 return _IMP_kernel._TestValue___cmp__(self, o)
1108 def __eq__(self, o):
1109 r"""__eq__(_TestValue self, _TestValue o) -> bool"""
1110 return _IMP_kernel._TestValue___eq__(self, o)
1112 def __ne__(self, o):
1113 r"""__ne__(_TestValue self, _TestValue o) -> bool"""
1114 return _IMP_kernel._TestValue___ne__(self, o)
1116 def __lt__(self, o):
1117 r"""__lt__(_TestValue self, _TestValue o) -> bool"""
1118 return _IMP_kernel._TestValue___lt__(self, o)
1120 def __gt__(self, o):
1121 r"""__gt__(_TestValue self, _TestValue o) -> bool"""
1122 return _IMP_kernel._TestValue___gt__(self, o)
1124 def __ge__(self, o):
1125 r"""__ge__(_TestValue self, _TestValue o) -> bool"""
1126 return _IMP_kernel._TestValue___ge__(self, o)
1128 def __le__(self, o):
1129 r"""__le__(_TestValue self, _TestValue o) -> bool"""
1130 return _IMP_kernel._TestValue___le__(self, o)
1133 r"""get(_TestValue self) -> int"""
1134 return _IMP_kernel._TestValue_get(self)
1136 def get_float(self):
1137 r"""get_float(_TestValue self) -> float const &"""
1138 return _IMP_kernel._TestValue_get_float(self)
1140 def get_double(self):
1141 r"""get_double(_TestValue self) -> double const &"""
1142 return _IMP_kernel._TestValue_get_double(self)
1144 def get_Float(self):
1145 r"""get_Float(_TestValue self) -> IMP::Float const &"""
1146 return _IMP_kernel._TestValue_get_Float(self)
1149 r"""get_int(_TestValue self) -> int const &"""
1150 return _IMP_kernel._TestValue_get_int(self)
1153 r"""get_Int(_TestValue self) -> IMP::Int const &"""
1154 return _IMP_kernel._TestValue_get_Int(self)
1156 def get_string(self):
1157 r"""get_string(_TestValue self) -> std::string const &"""
1158 return _IMP_kernel._TestValue_get_string(self)
1160 def get_String(self):
1161 r"""get_String(_TestValue self) -> IMP::String const &"""
1162 return _IMP_kernel._TestValue_get_String(self)
1165 r"""__str__(_TestValue self) -> std::string"""
1166 return _IMP_kernel._TestValue___str__(self)
1169 r"""__repr__(_TestValue self) -> std::string"""
1170 return _IMP_kernel._TestValue___repr__(self)
1171 __swig_destroy__ = _IMP_kernel.delete__TestValue
1174 _IMP_kernel._TestValue_swigregister(_TestValue)
1176 def _pass_plain_pair(p):
1177 r"""_pass_plain_pair(IMP::FloatPair p) -> IMP::FloatPair"""
1178 return _IMP_kernel._pass_plain_pair(p)
1180 def _pass_overloaded_strings(*args):
1182 _pass_overloaded_strings(IMP::Strings const & a, int arg2) -> IMP::Strings
1183 _pass_overloaded_strings(IMP::Strings const & a) -> IMP::Strings
1185 return _IMP_kernel._pass_overloaded_strings(*args)
1188 r"""_pass_pair(IMP::DerivativePair const & p) -> IMP::DerivativePair"""
1189 return _IMP_kernel._pass_pair(p)
1191 def _pass_floats(input):
1192 r"""_pass_floats(IMP::Floats const & input) -> IMP::Floats"""
1193 return _IMP_kernel._pass_floats(input)
1195 def _pass_ints(input):
1196 r"""_pass_ints(IMP::Ints input) -> IMP::Ints"""
1197 return _IMP_kernel._pass_ints(input)
1199 def _pass_ints_list(input):
1200 r"""_pass_ints_list(IMP::IntsList const & input) -> IMP::IntsList"""
1201 return _IMP_kernel._pass_ints_list(input)
1203 def _pass_ints_lists(input):
1204 r"""_pass_ints_lists(IMP::IntsLists const & input) -> IMP::IntsLists"""
1205 return _IMP_kernel._pass_ints_lists(input)
1207 def _pass_strings(input):
1208 r"""_pass_strings(IMP::Strings const & input) -> IMP::Strings const &"""
1209 return _IMP_kernel._pass_strings(input)
1210 class _TestObject(Object):
1211 r"""Proxy of C++ IMP::internal::_TestObject class."""
1213 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1216 r"""__init__(_TestObject self) -> _TestObject"""
1217 _IMP_kernel._TestObject_swiginit(self, _IMP_kernel.new__TestObject())
1219 def get_version_info(self):
1220 r"""get_version_info(_TestObject self) -> VersionInfo"""
1221 return _IMP_kernel._TestObject_get_version_info(self)
1222 __swig_destroy__ = _IMP_kernel.delete__TestObject
1225 r"""__str__(_TestObject self) -> std::string"""
1226 return _IMP_kernel._TestObject___str__(self)
1229 r"""__repr__(_TestObject self) -> std::string"""
1230 return _IMP_kernel._TestObject___repr__(self)
1234 return _object_cast_to__TestObject(o)
1238 _IMP_kernel._TestObject_swigregister(_TestObject)
1241 r"""get_live_object_names() -> IMP::Strings"""
1242 return _IMP_kernel.get_live_object_names()
1245 r"""get_live_objects() -> IMP::Objects"""
1246 return _IMP_kernel.get_live_objects()
1249 r"""set_show_leaked_objects(bool tf)"""
1250 return _IMP_kernel.set_show_leaked_objects(tf)
1253 r"""set_deprecation_warnings(bool tf)"""
1254 return _IMP_kernel.set_deprecation_warnings(tf)
1257 r"""set_deprecation_exceptions(bool tf)"""
1258 return _IMP_kernel.set_deprecation_exceptions(tf)
1261 r"""get_deprecation_exceptions() -> bool"""
1262 return _IMP_kernel.get_deprecation_exceptions()
1265 r"""handle_use_deprecated(std::string message)"""
1266 return _IMP_kernel.handle_use_deprecated(message)
1269 r"""get_number_of_threads() -> unsigned int"""
1270 return _IMP_kernel.get_number_of_threads()
1273 r"""set_number_of_threads(unsigned int n)"""
1274 return _IMP_kernel.set_number_of_threads(n)
1275 class SetNumberOfThreads(_RAII):
1276 r"""Proxy of C++ IMP::SetNumberOfThreads class."""
1278 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1280 def __init__(self, *args):
1282 __init__(SetNumberOfThreads self) -> SetNumberOfThreads
1283 __init__(SetNumberOfThreads self, unsigned int n) -> SetNumberOfThreads
1285 _IMP_kernel.SetNumberOfThreads_swiginit(self, _IMP_kernel.new_SetNumberOfThreads(*args))
1288 r"""set(SetNumberOfThreads self, unsigned int n)"""
1289 return _IMP_kernel.SetNumberOfThreads_set(self, n)
1292 r"""reset(SetNumberOfThreads self)"""
1293 return _IMP_kernel.SetNumberOfThreads_reset(self)
1294 __swig_destroy__ = _IMP_kernel.delete_SetNumberOfThreads
1296 def show(self, *args):
1297 r"""show(SetNumberOfThreads self, _ostream out=std::cout)"""
1298 return _IMP_kernel.SetNumberOfThreads_show(self, *args)
1300 def __enter__(self):
1302 def __exit__(self, exc_type, exc_val, exc_tb):
1308 r"""__str__(SetNumberOfThreads self) -> std::string"""
1309 return _IMP_kernel.SetNumberOfThreads___str__(self)
1312 r"""__repr__(SetNumberOfThreads self) -> std::string"""
1313 return _IMP_kernel.SetNumberOfThreads___repr__(self)
1316 _IMP_kernel.SetNumberOfThreads_swigregister(SetNumberOfThreads)
1319 i_m_p=
"IMP_MODULE_PATH"
1320 if i_m_p
in os.environ.keys():
1321 __path__.insert(0, os.environ[i_m_p])
1323 def _forward_add_attribute(self, name, value, opt=None):
1325 self.get_particle().add_attribute(name, value, opt)
1327 self.get_particle().add_attribute(name, value)
1328 def _forward_get_value(self, name):
1329 self.get_particle().get_value(name)
1330 def _forward_set_value(self, name, value):
1331 self.get_particle().set_value(name, value)
1337 _object_types.append(
"Constraint")
1340 def _object_cast_to_Constraint(o):
1341 r"""_object_cast_to_Constraint(Object o) -> Constraint"""
1342 return _IMP_kernel._object_cast_to_Constraint(o)
1344 _object_types.append(
"Undecorator")
1347 def _object_cast_to_Undecorator(o):
1348 r"""_object_cast_to_Undecorator(Object o) -> Undecorator"""
1349 return _IMP_kernel._object_cast_to_Undecorator(o)
1351 _object_types.append(
"Container")
1354 def _object_cast_to_Container(o):
1355 r"""_object_cast_to_Container(Object o) -> Container"""
1356 return _IMP_kernel._object_cast_to_Container(o)
1358 _object_types.append(
"Optimizer")
1361 def _object_cast_to_Optimizer(o):
1362 r"""_object_cast_to_Optimizer(Object o) -> Optimizer"""
1363 return _IMP_kernel._object_cast_to_Optimizer(o)
1365 _object_types.append(
"AttributeOptimizer")
1368 def _object_cast_to_AttributeOptimizer(o):
1369 r"""_object_cast_to_AttributeOptimizer(Object o) -> AttributeOptimizer"""
1370 return _IMP_kernel._object_cast_to_AttributeOptimizer(o)
1372 _object_types.append(
"OptimizerState")
1375 def _object_cast_to_OptimizerState(o):
1376 r"""_object_cast_to_OptimizerState(Object o) -> OptimizerState"""
1377 return _IMP_kernel._object_cast_to_OptimizerState(o)
1379 _object_types.append(
"PairContainer")
1382 def _object_cast_to_PairContainer(o):
1383 r"""_object_cast_to_PairContainer(Object o) -> PairContainer"""
1384 return _IMP_kernel._object_cast_to_PairContainer(o)
1386 _object_types.append(
"PairModifier")
1389 def _object_cast_to_PairModifier(o):
1390 r"""_object_cast_to_PairModifier(Object o) -> PairModifier"""
1391 return _IMP_kernel._object_cast_to_PairModifier(o)
1393 _object_types.append(
"PairScore")
1396 def _object_cast_to_PairScore(o):
1397 r"""_object_cast_to_PairScore(Object o) -> PairScore"""
1398 return _IMP_kernel._object_cast_to_PairScore(o)
1400 _object_types.append(
"QuadContainer")
1403 def _object_cast_to_QuadContainer(o):
1404 r"""_object_cast_to_QuadContainer(Object o) -> QuadContainer"""
1405 return _IMP_kernel._object_cast_to_QuadContainer(o)
1407 _object_types.append(
"QuadModifier")
1410 def _object_cast_to_QuadModifier(o):
1411 r"""_object_cast_to_QuadModifier(Object o) -> QuadModifier"""
1412 return _IMP_kernel._object_cast_to_QuadModifier(o)
1414 _object_types.append(
"QuadScore")
1417 def _object_cast_to_QuadScore(o):
1418 r"""_object_cast_to_QuadScore(Object o) -> QuadScore"""
1419 return _IMP_kernel._object_cast_to_QuadScore(o)
1421 _object_types.append(
"Refiner")
1424 def _object_cast_to_Refiner(o):
1425 r"""_object_cast_to_Refiner(Object o) -> Refiner"""
1426 return _IMP_kernel._object_cast_to_Refiner(o)
1428 _object_types.append(
"Restraint")
1431 def _object_cast_to_Restraint(o):
1432 r"""_object_cast_to_Restraint(Object o) -> Restraint"""
1433 return _IMP_kernel._object_cast_to_Restraint(o)
1435 _object_types.append(
"Sampler")
1438 def _object_cast_to_Sampler(o):
1439 r"""_object_cast_to_Sampler(Object o) -> Sampler"""
1440 return _IMP_kernel._object_cast_to_Sampler(o)
1442 _object_types.append(
"ScoreState")
1445 def _object_cast_to_ScoreState(o):
1446 r"""_object_cast_to_ScoreState(Object o) -> ScoreState"""
1447 return _IMP_kernel._object_cast_to_ScoreState(o)
1449 _object_types.append(
"SingletonContainer")
1452 def _object_cast_to_SingletonContainer(o):
1453 r"""_object_cast_to_SingletonContainer(Object o) -> SingletonContainer"""
1454 return _IMP_kernel._object_cast_to_SingletonContainer(o)
1456 _object_types.append(
"SingletonModifier")
1459 def _object_cast_to_SingletonModifier(o):
1460 r"""_object_cast_to_SingletonModifier(Object o) -> SingletonModifier"""
1461 return _IMP_kernel._object_cast_to_SingletonModifier(o)
1463 _object_types.append(
"SingletonScore")
1466 def _object_cast_to_SingletonScore(o):
1467 r"""_object_cast_to_SingletonScore(Object o) -> SingletonScore"""
1468 return _IMP_kernel._object_cast_to_SingletonScore(o)
1470 _object_types.append(
"TripletContainer")
1473 def _object_cast_to_TripletContainer(o):
1474 r"""_object_cast_to_TripletContainer(Object o) -> TripletContainer"""
1475 return _IMP_kernel._object_cast_to_TripletContainer(o)
1477 _object_types.append(
"TripletModifier")
1480 def _object_cast_to_TripletModifier(o):
1481 r"""_object_cast_to_TripletModifier(Object o) -> TripletModifier"""
1482 return _IMP_kernel._object_cast_to_TripletModifier(o)
1484 _object_types.append(
"TripletScore")
1487 def _object_cast_to_TripletScore(o):
1488 r"""_object_cast_to_TripletScore(Object o) -> TripletScore"""
1489 return _IMP_kernel._object_cast_to_TripletScore(o)
1491 _object_types.append(
"UnaryFunction")
1494 def _object_cast_to_UnaryFunction(o):
1495 r"""_object_cast_to_UnaryFunction(Object o) -> UnaryFunction"""
1496 return _IMP_kernel._object_cast_to_UnaryFunction(o)
1498 _object_types.append(
"RestraintInfo")
1501 def _object_cast_to_RestraintInfo(o):
1502 r"""_object_cast_to_RestraintInfo(Object o) -> RestraintInfo"""
1503 return _IMP_kernel._object_cast_to_RestraintInfo(o)
1505 _object_types.append(
"ConfigurationSet")
1508 def _object_cast_to_ConfigurationSet(o):
1509 r"""_object_cast_to_ConfigurationSet(Object o) -> ConfigurationSet"""
1510 return _IMP_kernel._object_cast_to_ConfigurationSet(o)
1512 _object_types.append(
"Configuration")
1515 def _object_cast_to_Configuration(o):
1516 r"""_object_cast_to_Configuration(Object o) -> Configuration"""
1517 return _IMP_kernel._object_cast_to_Configuration(o)
1519 _object_types.append(
"Model")
1522 def _object_cast_to_Model(o):
1523 r"""_object_cast_to_Model(Object o) -> Model"""
1524 return _IMP_kernel._object_cast_to_Model(o)
1526 _object_types.append(
"Particle")
1529 def _object_cast_to_Particle(o):
1530 r"""_object_cast_to_Particle(Object o) -> Particle"""
1531 return _IMP_kernel._object_cast_to_Particle(o)
1533 _object_types.append(
"RestraintSet")
1536 def _object_cast_to_RestraintSet(o):
1537 r"""_object_cast_to_RestraintSet(Object o) -> RestraintSet"""
1538 return _IMP_kernel._object_cast_to_RestraintSet(o)
1540 ParticlePairsTemp=list
1541 _plural_types.append(
"ParticlePairsTemp")
1542 _value_types.append(
"ParticlePair")
1545 ParticleTripletsTemp=list
1546 _plural_types.append(
"ParticleTripletsTemp")
1547 _value_types.append(
"ParticleTriplet")
1550 ParticleQuadsTemp=list
1551 _plural_types.append(
"ParticleQuadsTemp")
1552 _value_types.append(
"ParticleQuad")
1555 ParticleIndexPairs=list
1556 _plural_types.append(
"ParticleIndexPairs")
1557 _value_types.append(
"ParticleIndexPair")
1560 ParticleIndexTriplets=list
1561 _plural_types.append(
"ParticleIndexTriplets")
1562 _value_types.append(
"ParticleIndexTriplet")
1565 ParticleIndexQuads=list
1566 _plural_types.append(
"ParticleIndexQuads")
1567 _value_types.append(
"ParticleIndexQuad")
1570 _object_types.append(
"SingletonPredicate")
1573 def _object_cast_to_SingletonPredicate(o):
1574 r"""_object_cast_to_SingletonPredicate(Object o) -> SingletonPredicate"""
1575 return _IMP_kernel._object_cast_to_SingletonPredicate(o)
1577 _object_types.append(
"PairPredicate")
1580 def _object_cast_to_PairPredicate(o):
1581 r"""_object_cast_to_PairPredicate(Object o) -> PairPredicate"""
1582 return _IMP_kernel._object_cast_to_PairPredicate(o)
1584 _object_types.append(
"TripletPredicate")
1587 def _object_cast_to_TripletPredicate(o):
1588 r"""_object_cast_to_TripletPredicate(Object o) -> TripletPredicate"""
1589 return _IMP_kernel._object_cast_to_TripletPredicate(o)
1591 _object_types.append(
"QuadPredicate")
1594 def _object_cast_to_QuadPredicate(o):
1595 r"""_object_cast_to_QuadPredicate(Object o) -> QuadPredicate"""
1596 return _IMP_kernel._object_cast_to_QuadPredicate(o)
1598 _object_types.append(
"SaveToConfigurationSetOptimizerState")
1601 def _object_cast_to_SaveToConfigurationSetOptimizerState(o):
1602 r"""_object_cast_to_SaveToConfigurationSetOptimizerState(Object o) -> SaveToConfigurationSetOptimizerState"""
1603 return _IMP_kernel._object_cast_to_SaveToConfigurationSetOptimizerState(o)
1605 EvaluationStates=list
1606 _plural_types.append(
"EvaluationStates")
1607 _value_types.append(
"EvaluationState")
1610 ScoreAccumulators=list
1611 _plural_types.append(
"ScoreAccumulators")
1612 _value_types.append(
"ScoreAccumulator")
1615 ParticleIndexes=list
1616 _plural_types.append(
"ParticleIndexes")
1617 _value_types.append(
"ParticleIndex")
1621 _plural_types.append(
"FloatIndexes")
1622 _value_types.append(
"FloatIndex")
1626 _plural_types.append(
"FloatKeys")
1627 _value_types.append(
"FloatKey")
1631 _plural_types.append(
"FloatsKeys")
1632 _value_types.append(
"FloatsKey")
1636 _plural_types.append(
"IntKeys")
1637 _value_types.append(
"IntKey")
1641 _plural_types.append(
"IntsKeys")
1642 _value_types.append(
"IntsKey")
1646 _plural_types.append(
"StringKeys")
1647 _value_types.append(
"StringKey")
1650 ParticleIndexKeys=list
1651 _plural_types.append(
"ParticleIndexKeys")
1652 _value_types.append(
"ParticleIndexKey")
1655 ParticleIndexesKeys=list
1656 _plural_types.append(
"ParticleIndexesKeys")
1657 _value_types.append(
"ParticleIndexesKey")
1661 _plural_types.append(
"ObjectKeys")
1662 _value_types.append(
"ObjectKey")
1666 _plural_types.append(
"ModelKeys")
1667 _value_types.append(
"ModelKey")
1671 _plural_types.append(
"TriggerKeys")
1672 _value_types.append(
"TriggerKey")
1675 SparseFloatKeys=list
1676 _plural_types.append(
"SparseFloatKeys")
1677 _value_types.append(
"SparseFloatKey")
1681 _plural_types.append(
"SparseIntKeys")
1682 _value_types.append(
"SparseIntKey")
1685 SparseStringKeys=list
1686 _plural_types.append(
"SparseStringKeys")
1687 _value_types.append(
"SparseStringKey")
1690 SparseParticleIndexKeys=list
1691 _plural_types.append(
"SparseParticleIndexKeys")
1692 _value_types.append(
"SparseParticleIndexKey")
1695 _raii_types.append(
"ScopedSetFloatAttribute")
1698 _object_types.append(
"ScoringFunction")
1701 def _object_cast_to_ScoringFunction(o):
1702 r"""_object_cast_to_ScoringFunction(Object o) -> ScoringFunction"""
1703 return _IMP_kernel._object_cast_to_ScoringFunction(o)
1705 _object_types.append(
"ModelObject")
1708 def _object_cast_to_ModelObject(o):
1709 r"""_object_cast_to_ModelObject(Object o) -> ModelObject"""
1710 return _IMP_kernel._object_cast_to_ModelObject(o)
1712 def _TrivialDecorators(l=[]):
1713 return [_TrivialDecorator(x)
for x
in l]
1714 _plural_types.append(
"_TrivialDecorators")
1717 _value_types.append(
"_TrivialDecorator")
1720 def _TrivialDerivedDecorators(l=[]):
1721 return [_TrivialDerivedDecorator(x)
for x
in l]
1722 _plural_types.append(
"_TrivialDerivedDecorators")
1725 _value_types.append(
"_TrivialDerivedDecorator")
1728 def _TrivialTraitsDecorators(l=[]):
1729 return [_TrivialTraitsDecorator(x)
for x
in l]
1730 _plural_types.append(
"_TrivialTraitsDecorators")
1733 _value_types.append(
"_TrivialTraitsDecorator")
1736 _object_types.append(
"_ConstRestraint")
1739 def _object_cast_to__ConstRestraint(o):
1740 r"""_object_cast_to__ConstRestraint(Object o) -> _ConstRestraint"""
1741 return _IMP_kernel._object_cast_to__ConstRestraint(o)
1743 _object_types.append(
"_ConstOptimizer")
1746 def _object_cast_to__ConstOptimizer(o):
1747 r"""_object_cast_to__ConstOptimizer(Object o) -> _ConstOptimizer"""
1748 return _IMP_kernel._object_cast_to__ConstOptimizer(o)
1750 _object_types.append(
"_ConstSingletonScore")
1753 def _object_cast_to__ConstSingletonScore(o):
1754 r"""_object_cast_to__ConstSingletonScore(Object o) -> _ConstSingletonScore"""
1755 return _IMP_kernel._object_cast_to__ConstSingletonScore(o)
1757 _object_types.append(
"_ConstPairScore")
1760 def _object_cast_to__ConstPairScore(o):
1761 r"""_object_cast_to__ConstPairScore(Object o) -> _ConstPairScore"""
1762 return _IMP_kernel._object_cast_to__ConstPairScore(o)
1764 r"""Proxy of C++ IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex > class."""
1766 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1767 __repr__ = _swig_repr
1770 r"""__init__(DependencyGraph self) -> DependencyGraph"""
1771 _IMP_kernel.DependencyGraph_swiginit(self, _IMP_kernel.new_DependencyGraph())
1773 def get_graph(self):
1774 r"""get_graph(DependencyGraph self) -> IMP::DependencyGraph const &"""
1775 return _IMP_kernel.DependencyGraph_get_graph(self)
1778 r"""get_vertices(DependencyGraph self) -> IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptors"""
1779 return _IMP_kernel.DependencyGraph_get_vertices(self)
1781 def get_vertex_name(self, i):
1782 r"""get_vertex_name(DependencyGraph self, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor i) -> ModelObject"""
1783 return _IMP_kernel.DependencyGraph_get_vertex_name(self, i)
1785 def get_in_neighbors(self, v):
1786 r"""get_in_neighbors(DependencyGraph self, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptors"""
1787 return _IMP_kernel.DependencyGraph_get_in_neighbors(self, v)
1789 def get_out_neighbors(self, v):
1790 r"""get_out_neighbors(DependencyGraph self, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor v) -> IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptors"""
1791 return _IMP_kernel.DependencyGraph_get_out_neighbors(self, v)
1794 r"""show_graphviz(DependencyGraph self, _ostream out=std::cout)"""
1795 return _IMP_kernel.DependencyGraph_show_graphviz(self, *args)
1797 def get_graphviz_string(self):
1798 r"""get_graphviz_string(DependencyGraph self) -> std::string"""
1799 return _IMP_kernel.DependencyGraph_get_graphviz_string(self)
1801 def add_edge(self, v0, v1):
1802 r"""add_edge(DependencyGraph self, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor v0, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor v1)"""
1803 return _IMP_kernel.DependencyGraph_add_edge(self, v0, v1)
1805 def add_vertex(self, l):
1806 r"""add_vertex(DependencyGraph self, ModelObject l) -> IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor"""
1807 return _IMP_kernel.DependencyGraph_add_vertex(self, l)
1809 def remove_vertex(self, l):
1810 r"""remove_vertex(DependencyGraph self, IMP::internal::BoostDigraph< IMP::DependencyGraph,IMP::ModelObject *,IMP::ShowDependencyGraphVertex >::VertexDescriptor l)"""
1811 return _IMP_kernel.DependencyGraph_remove_vertex(self, l)
1812 __swig_destroy__ = _IMP_kernel.delete_DependencyGraph
1815 _IMP_kernel.DependencyGraph_swigregister(DependencyGraph)
1817 _value_types.append(
"DependencyGraph")
1820 r"""Proxy of C++ IMP::Key< 0 > class."""
1822 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1824 def __init__(self, *args):
1826 __init__(FloatKey self) -> FloatKey
1827 __init__(FloatKey self, std::string const & c, bool is_implicit_add_permitted=True) -> FloatKey
1828 __init__(FloatKey self, unsigned int i) -> FloatKey
1830 _IMP_kernel.FloatKey_swiginit(self, _IMP_kernel.new_FloatKey(*args))
1834 r"""add_key(std::string sc) -> unsigned int"""
1835 return _IMP_kernel.FloatKey_add_key(sc)
1838 def get_key_exists(sc):
1839 r"""get_key_exists(std::string sc) -> bool"""
1840 return _IMP_kernel.FloatKey_get_key_exists(sc)
1842 def get_string(self):
1843 r"""get_string(FloatKey self) -> std::string const"""
1844 return _IMP_kernel.FloatKey_get_string(self)
1846 def __cmp__(self, o):
1847 r"""__cmp__(FloatKey self, FloatKey o) -> int"""
1848 return _IMP_kernel.FloatKey___cmp__(self, o)
1850 def __eq__(self, o):
1851 r"""__eq__(FloatKey self, FloatKey o) -> bool"""
1852 return _IMP_kernel.FloatKey___eq__(self, o)
1854 def __ne__(self, o):
1855 r"""__ne__(FloatKey self, FloatKey o) -> bool"""
1856 return _IMP_kernel.FloatKey___ne__(self, o)
1858 def __lt__(self, o):
1859 r"""__lt__(FloatKey self, FloatKey o) -> bool"""
1860 return _IMP_kernel.FloatKey___lt__(self, o)
1862 def __gt__(self, o):
1863 r"""__gt__(FloatKey self, FloatKey o) -> bool"""
1864 return _IMP_kernel.FloatKey___gt__(self, o)
1866 def __ge__(self, o):
1867 r"""__ge__(FloatKey self, FloatKey o) -> bool"""
1868 return _IMP_kernel.FloatKey___ge__(self, o)
1870 def __le__(self, o):
1871 r"""__le__(FloatKey self, FloatKey o) -> bool"""
1872 return _IMP_kernel.FloatKey___le__(self, o)
1875 r"""__hash__(FloatKey self) -> std::size_t"""
1876 return _IMP_kernel.FloatKey___hash__(self)
1878 def show(self, *args):
1879 r"""show(FloatKey self, _ostream out=std::cout)"""
1880 return _IMP_kernel.FloatKey_show(self, *args)
1883 def add_alias(old_key, new_name):
1884 r"""add_alias(FloatKey old_key, std::string new_name) -> FloatKey"""
1885 return _IMP_kernel.FloatKey_add_alias(old_key, new_name)
1888 def get_number_of_keys():
1889 r"""get_number_of_keys() -> unsigned int"""
1890 return _IMP_kernel.FloatKey_get_number_of_keys()
1893 r"""get_index(FloatKey self) -> unsigned int"""
1894 return _IMP_kernel.FloatKey_get_index(self)
1898 r"""show_all(_ostream out)"""
1899 return _IMP_kernel.FloatKey_show_all(out)
1902 def get_all_strings():
1903 r"""get_all_strings() -> IMP::Vector< std::string >"""
1904 return _IMP_kernel.FloatKey_get_all_strings()
1907 def get_number_unique():
1908 r"""get_number_unique() -> unsigned int"""
1909 return _IMP_kernel.FloatKey_get_number_unique()
1912 r"""__str__(FloatKey self) -> std::string"""
1913 return _IMP_kernel.FloatKey___str__(self)
1916 r"""__repr__(FloatKey self) -> std::string"""
1917 return _IMP_kernel.FloatKey___repr__(self)
1918 __swig_destroy__ = _IMP_kernel.delete_FloatKey
1921 _IMP_kernel.FloatKey_swigregister(FloatKey)
1923 r"""Proxy of C++ IMP::Key< 1 > class."""
1925 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
1927 def __init__(self, *args):
1929 __init__(IntKey self) -> IntKey
1930 __init__(IntKey self, std::string const & c, bool is_implicit_add_permitted=True) -> IntKey
1931 __init__(IntKey self, unsigned int i) -> IntKey
1933 _IMP_kernel.IntKey_swiginit(self, _IMP_kernel.new_IntKey(*args))
1937 r"""add_key(std::string sc) -> unsigned int"""
1938 return _IMP_kernel.IntKey_add_key(sc)
1941 def get_key_exists(sc):
1942 r"""get_key_exists(std::string sc) -> bool"""
1943 return _IMP_kernel.IntKey_get_key_exists(sc)
1945 def get_string(self):
1946 r"""get_string(IntKey self) -> std::string const"""
1947 return _IMP_kernel.IntKey_get_string(self)
1949 def __cmp__(self, o):
1950 r"""__cmp__(IntKey self, IntKey o) -> int"""
1951 return _IMP_kernel.IntKey___cmp__(self, o)
1953 def __eq__(self, o):
1954 r"""__eq__(IntKey self, IntKey o) -> bool"""
1955 return _IMP_kernel.IntKey___eq__(self, o)
1957 def __ne__(self, o):
1958 r"""__ne__(IntKey self, IntKey o) -> bool"""
1959 return _IMP_kernel.IntKey___ne__(self, o)
1961 def __lt__(self, o):
1962 r"""__lt__(IntKey self, IntKey o) -> bool"""
1963 return _IMP_kernel.IntKey___lt__(self, o)
1965 def __gt__(self, o):
1966 r"""__gt__(IntKey self, IntKey o) -> bool"""
1967 return _IMP_kernel.IntKey___gt__(self, o)
1969 def __ge__(self, o):
1970 r"""__ge__(IntKey self, IntKey o) -> bool"""
1971 return _IMP_kernel.IntKey___ge__(self, o)
1973 def __le__(self, o):
1974 r"""__le__(IntKey self, IntKey o) -> bool"""
1975 return _IMP_kernel.IntKey___le__(self, o)
1978 r"""__hash__(IntKey self) -> std::size_t"""
1979 return _IMP_kernel.IntKey___hash__(self)
1981 def show(self, *args):
1982 r"""show(IntKey self, _ostream out=std::cout)"""
1983 return _IMP_kernel.IntKey_show(self, *args)
1986 def add_alias(old_key, new_name):
1987 r"""add_alias(IntKey old_key, std::string new_name) -> IntKey"""
1988 return _IMP_kernel.IntKey_add_alias(old_key, new_name)
1991 def get_number_of_keys():
1992 r"""get_number_of_keys() -> unsigned int"""
1993 return _IMP_kernel.IntKey_get_number_of_keys()
1996 r"""get_index(IntKey self) -> unsigned int"""
1997 return _IMP_kernel.IntKey_get_index(self)
2001 r"""show_all(_ostream out)"""
2002 return _IMP_kernel.IntKey_show_all(out)
2005 def get_all_strings():
2006 r"""get_all_strings() -> IMP::Vector< std::string >"""
2007 return _IMP_kernel.IntKey_get_all_strings()
2010 def get_number_unique():
2011 r"""get_number_unique() -> unsigned int"""
2012 return _IMP_kernel.IntKey_get_number_unique()
2015 r"""__str__(IntKey self) -> std::string"""
2016 return _IMP_kernel.IntKey___str__(self)
2019 r"""__repr__(IntKey self) -> std::string"""
2020 return _IMP_kernel.IntKey___repr__(self)
2021 __swig_destroy__ = _IMP_kernel.delete_IntKey
2024 _IMP_kernel.IntKey_swigregister(IntKey)
2026 r"""Proxy of C++ IMP::Key< 2 > class."""
2028 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2030 def __init__(self, *args):
2032 __init__(StringKey self) -> StringKey
2033 __init__(StringKey self, std::string const & c, bool is_implicit_add_permitted=True) -> StringKey
2034 __init__(StringKey self, unsigned int i) -> StringKey
2036 _IMP_kernel.StringKey_swiginit(self, _IMP_kernel.new_StringKey(*args))
2040 r"""add_key(std::string sc) -> unsigned int"""
2041 return _IMP_kernel.StringKey_add_key(sc)
2044 def get_key_exists(sc):
2045 r"""get_key_exists(std::string sc) -> bool"""
2046 return _IMP_kernel.StringKey_get_key_exists(sc)
2048 def get_string(self):
2049 r"""get_string(StringKey self) -> std::string const"""
2050 return _IMP_kernel.StringKey_get_string(self)
2052 def __cmp__(self, o):
2053 r"""__cmp__(StringKey self, StringKey o) -> int"""
2054 return _IMP_kernel.StringKey___cmp__(self, o)
2056 def __eq__(self, o):
2057 r"""__eq__(StringKey self, StringKey o) -> bool"""
2058 return _IMP_kernel.StringKey___eq__(self, o)
2060 def __ne__(self, o):
2061 r"""__ne__(StringKey self, StringKey o) -> bool"""
2062 return _IMP_kernel.StringKey___ne__(self, o)
2064 def __lt__(self, o):
2065 r"""__lt__(StringKey self, StringKey o) -> bool"""
2066 return _IMP_kernel.StringKey___lt__(self, o)
2068 def __gt__(self, o):
2069 r"""__gt__(StringKey self, StringKey o) -> bool"""
2070 return _IMP_kernel.StringKey___gt__(self, o)
2072 def __ge__(self, o):
2073 r"""__ge__(StringKey self, StringKey o) -> bool"""
2074 return _IMP_kernel.StringKey___ge__(self, o)
2076 def __le__(self, o):
2077 r"""__le__(StringKey self, StringKey o) -> bool"""
2078 return _IMP_kernel.StringKey___le__(self, o)
2081 r"""__hash__(StringKey self) -> std::size_t"""
2082 return _IMP_kernel.StringKey___hash__(self)
2084 def show(self, *args):
2085 r"""show(StringKey self, _ostream out=std::cout)"""
2086 return _IMP_kernel.StringKey_show(self, *args)
2089 def add_alias(old_key, new_name):
2090 r"""add_alias(StringKey old_key, std::string new_name) -> StringKey"""
2091 return _IMP_kernel.StringKey_add_alias(old_key, new_name)
2094 def get_number_of_keys():
2095 r"""get_number_of_keys() -> unsigned int"""
2096 return _IMP_kernel.StringKey_get_number_of_keys()
2099 r"""get_index(StringKey self) -> unsigned int"""
2100 return _IMP_kernel.StringKey_get_index(self)
2104 r"""show_all(_ostream out)"""
2105 return _IMP_kernel.StringKey_show_all(out)
2108 def get_all_strings():
2109 r"""get_all_strings() -> IMP::Vector< std::string >"""
2110 return _IMP_kernel.StringKey_get_all_strings()
2113 def get_number_unique():
2114 r"""get_number_unique() -> unsigned int"""
2115 return _IMP_kernel.StringKey_get_number_unique()
2118 r"""__str__(StringKey self) -> std::string"""
2119 return _IMP_kernel.StringKey___str__(self)
2122 r"""__repr__(StringKey self) -> std::string"""
2123 return _IMP_kernel.StringKey___repr__(self)
2124 __swig_destroy__ = _IMP_kernel.delete_StringKey
2127 _IMP_kernel.StringKey_swigregister(StringKey)
2129 r"""Proxy of C++ IMP::Key< 3 > class."""
2131 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2133 def __init__(self, *args):
2135 __init__(ParticleIndexKey self) -> ParticleIndexKey
2136 __init__(ParticleIndexKey self, std::string const & c, bool is_implicit_add_permitted=True) -> ParticleIndexKey
2137 __init__(ParticleIndexKey self, unsigned int i) -> ParticleIndexKey
2139 _IMP_kernel.ParticleIndexKey_swiginit(self, _IMP_kernel.new_ParticleIndexKey(*args))
2143 r"""add_key(std::string sc) -> unsigned int"""
2144 return _IMP_kernel.ParticleIndexKey_add_key(sc)
2147 def get_key_exists(sc):
2148 r"""get_key_exists(std::string sc) -> bool"""
2149 return _IMP_kernel.ParticleIndexKey_get_key_exists(sc)
2151 def get_string(self):
2152 r"""get_string(ParticleIndexKey self) -> std::string const"""
2153 return _IMP_kernel.ParticleIndexKey_get_string(self)
2155 def __cmp__(self, o):
2156 r"""__cmp__(ParticleIndexKey self, ParticleIndexKey o) -> int"""
2157 return _IMP_kernel.ParticleIndexKey___cmp__(self, o)
2159 def __eq__(self, o):
2160 r"""__eq__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2161 return _IMP_kernel.ParticleIndexKey___eq__(self, o)
2163 def __ne__(self, o):
2164 r"""__ne__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2165 return _IMP_kernel.ParticleIndexKey___ne__(self, o)
2167 def __lt__(self, o):
2168 r"""__lt__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2169 return _IMP_kernel.ParticleIndexKey___lt__(self, o)
2171 def __gt__(self, o):
2172 r"""__gt__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2173 return _IMP_kernel.ParticleIndexKey___gt__(self, o)
2175 def __ge__(self, o):
2176 r"""__ge__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2177 return _IMP_kernel.ParticleIndexKey___ge__(self, o)
2179 def __le__(self, o):
2180 r"""__le__(ParticleIndexKey self, ParticleIndexKey o) -> bool"""
2181 return _IMP_kernel.ParticleIndexKey___le__(self, o)
2184 r"""__hash__(ParticleIndexKey self) -> std::size_t"""
2185 return _IMP_kernel.ParticleIndexKey___hash__(self)
2187 def show(self, *args):
2188 r"""show(ParticleIndexKey self, _ostream out=std::cout)"""
2189 return _IMP_kernel.ParticleIndexKey_show(self, *args)
2192 def add_alias(old_key, new_name):
2193 r"""add_alias(ParticleIndexKey old_key, std::string new_name) -> ParticleIndexKey"""
2194 return _IMP_kernel.ParticleIndexKey_add_alias(old_key, new_name)
2197 def get_number_of_keys():
2198 r"""get_number_of_keys() -> unsigned int"""
2199 return _IMP_kernel.ParticleIndexKey_get_number_of_keys()
2202 r"""get_index(ParticleIndexKey self) -> unsigned int"""
2203 return _IMP_kernel.ParticleIndexKey_get_index(self)
2207 r"""show_all(_ostream out)"""
2208 return _IMP_kernel.ParticleIndexKey_show_all(out)
2211 def get_all_strings():
2212 r"""get_all_strings() -> IMP::Vector< std::string >"""
2213 return _IMP_kernel.ParticleIndexKey_get_all_strings()
2216 def get_number_unique():
2217 r"""get_number_unique() -> unsigned int"""
2218 return _IMP_kernel.ParticleIndexKey_get_number_unique()
2221 r"""__str__(ParticleIndexKey self) -> std::string"""
2222 return _IMP_kernel.ParticleIndexKey___str__(self)
2225 r"""__repr__(ParticleIndexKey self) -> std::string"""
2226 return _IMP_kernel.ParticleIndexKey___repr__(self)
2227 __swig_destroy__ = _IMP_kernel.delete_ParticleIndexKey
2230 _IMP_kernel.ParticleIndexKey_swigregister(ParticleIndexKey)
2232 r"""Proxy of C++ IMP::Key< 4 > class."""
2234 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2236 def __init__(self, *args):
2238 __init__(ObjectKey self) -> ObjectKey
2239 __init__(ObjectKey self, std::string const & c, bool is_implicit_add_permitted=True) -> ObjectKey
2240 __init__(ObjectKey self, unsigned int i) -> ObjectKey
2242 _IMP_kernel.ObjectKey_swiginit(self, _IMP_kernel.new_ObjectKey(*args))
2246 r"""add_key(std::string sc) -> unsigned int"""
2247 return _IMP_kernel.ObjectKey_add_key(sc)
2250 def get_key_exists(sc):
2251 r"""get_key_exists(std::string sc) -> bool"""
2252 return _IMP_kernel.ObjectKey_get_key_exists(sc)
2254 def get_string(self):
2255 r"""get_string(ObjectKey self) -> std::string const"""
2256 return _IMP_kernel.ObjectKey_get_string(self)
2258 def __cmp__(self, o):
2259 r"""__cmp__(ObjectKey self, ObjectKey o) -> int"""
2260 return _IMP_kernel.ObjectKey___cmp__(self, o)
2262 def __eq__(self, o):
2263 r"""__eq__(ObjectKey self, ObjectKey o) -> bool"""
2264 return _IMP_kernel.ObjectKey___eq__(self, o)
2266 def __ne__(self, o):
2267 r"""__ne__(ObjectKey self, ObjectKey o) -> bool"""
2268 return _IMP_kernel.ObjectKey___ne__(self, o)
2270 def __lt__(self, o):
2271 r"""__lt__(ObjectKey self, ObjectKey o) -> bool"""
2272 return _IMP_kernel.ObjectKey___lt__(self, o)
2274 def __gt__(self, o):
2275 r"""__gt__(ObjectKey self, ObjectKey o) -> bool"""
2276 return _IMP_kernel.ObjectKey___gt__(self, o)
2278 def __ge__(self, o):
2279 r"""__ge__(ObjectKey self, ObjectKey o) -> bool"""
2280 return _IMP_kernel.ObjectKey___ge__(self, o)
2282 def __le__(self, o):
2283 r"""__le__(ObjectKey self, ObjectKey o) -> bool"""
2284 return _IMP_kernel.ObjectKey___le__(self, o)
2287 r"""__hash__(ObjectKey self) -> std::size_t"""
2288 return _IMP_kernel.ObjectKey___hash__(self)
2290 def show(self, *args):
2291 r"""show(ObjectKey self, _ostream out=std::cout)"""
2292 return _IMP_kernel.ObjectKey_show(self, *args)
2295 def add_alias(old_key, new_name):
2296 r"""add_alias(ObjectKey old_key, std::string new_name) -> ObjectKey"""
2297 return _IMP_kernel.ObjectKey_add_alias(old_key, new_name)
2300 def get_number_of_keys():
2301 r"""get_number_of_keys() -> unsigned int"""
2302 return _IMP_kernel.ObjectKey_get_number_of_keys()
2305 r"""get_index(ObjectKey self) -> unsigned int"""
2306 return _IMP_kernel.ObjectKey_get_index(self)
2310 r"""show_all(_ostream out)"""
2311 return _IMP_kernel.ObjectKey_show_all(out)
2314 def get_all_strings():
2315 r"""get_all_strings() -> IMP::Vector< std::string >"""
2316 return _IMP_kernel.ObjectKey_get_all_strings()
2319 def get_number_unique():
2320 r"""get_number_unique() -> unsigned int"""
2321 return _IMP_kernel.ObjectKey_get_number_unique()
2324 r"""__str__(ObjectKey self) -> std::string"""
2325 return _IMP_kernel.ObjectKey___str__(self)
2328 r"""__repr__(ObjectKey self) -> std::string"""
2329 return _IMP_kernel.ObjectKey___repr__(self)
2330 __swig_destroy__ = _IMP_kernel.delete_ObjectKey
2333 _IMP_kernel.ObjectKey_swigregister(ObjectKey)
2335 r"""Proxy of C++ IMP::Key< 5 > class."""
2337 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2339 def __init__(self, *args):
2341 __init__(IntsKey self) -> IntsKey
2342 __init__(IntsKey self, std::string const & c, bool is_implicit_add_permitted=True) -> IntsKey
2343 __init__(IntsKey self, unsigned int i) -> IntsKey
2345 _IMP_kernel.IntsKey_swiginit(self, _IMP_kernel.new_IntsKey(*args))
2349 r"""add_key(std::string sc) -> unsigned int"""
2350 return _IMP_kernel.IntsKey_add_key(sc)
2353 def get_key_exists(sc):
2354 r"""get_key_exists(std::string sc) -> bool"""
2355 return _IMP_kernel.IntsKey_get_key_exists(sc)
2357 def get_string(self):
2358 r"""get_string(IntsKey self) -> std::string const"""
2359 return _IMP_kernel.IntsKey_get_string(self)
2361 def __cmp__(self, o):
2362 r"""__cmp__(IntsKey self, IntsKey o) -> int"""
2363 return _IMP_kernel.IntsKey___cmp__(self, o)
2365 def __eq__(self, o):
2366 r"""__eq__(IntsKey self, IntsKey o) -> bool"""
2367 return _IMP_kernel.IntsKey___eq__(self, o)
2369 def __ne__(self, o):
2370 r"""__ne__(IntsKey self, IntsKey o) -> bool"""
2371 return _IMP_kernel.IntsKey___ne__(self, o)
2373 def __lt__(self, o):
2374 r"""__lt__(IntsKey self, IntsKey o) -> bool"""
2375 return _IMP_kernel.IntsKey___lt__(self, o)
2377 def __gt__(self, o):
2378 r"""__gt__(IntsKey self, IntsKey o) -> bool"""
2379 return _IMP_kernel.IntsKey___gt__(self, o)
2381 def __ge__(self, o):
2382 r"""__ge__(IntsKey self, IntsKey o) -> bool"""
2383 return _IMP_kernel.IntsKey___ge__(self, o)
2385 def __le__(self, o):
2386 r"""__le__(IntsKey self, IntsKey o) -> bool"""
2387 return _IMP_kernel.IntsKey___le__(self, o)
2390 r"""__hash__(IntsKey self) -> std::size_t"""
2391 return _IMP_kernel.IntsKey___hash__(self)
2393 def show(self, *args):
2394 r"""show(IntsKey self, _ostream out=std::cout)"""
2395 return _IMP_kernel.IntsKey_show(self, *args)
2398 def add_alias(old_key, new_name):
2399 r"""add_alias(IntsKey old_key, std::string new_name) -> IntsKey"""
2400 return _IMP_kernel.IntsKey_add_alias(old_key, new_name)
2403 def get_number_of_keys():
2404 r"""get_number_of_keys() -> unsigned int"""
2405 return _IMP_kernel.IntsKey_get_number_of_keys()
2408 r"""get_index(IntsKey self) -> unsigned int"""
2409 return _IMP_kernel.IntsKey_get_index(self)
2413 r"""show_all(_ostream out)"""
2414 return _IMP_kernel.IntsKey_show_all(out)
2417 def get_all_strings():
2418 r"""get_all_strings() -> IMP::Vector< std::string >"""
2419 return _IMP_kernel.IntsKey_get_all_strings()
2422 def get_number_unique():
2423 r"""get_number_unique() -> unsigned int"""
2424 return _IMP_kernel.IntsKey_get_number_unique()
2427 r"""__str__(IntsKey self) -> std::string"""
2428 return _IMP_kernel.IntsKey___str__(self)
2431 r"""__repr__(IntsKey self) -> std::string"""
2432 return _IMP_kernel.IntsKey___repr__(self)
2433 __swig_destroy__ = _IMP_kernel.delete_IntsKey
2436 _IMP_kernel.IntsKey_swigregister(IntsKey)
2438 r"""Proxy of C++ IMP::Key< 6 > class."""
2440 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2442 def __init__(self, *args):
2444 __init__(ParticleIndexesKey self) -> ParticleIndexesKey
2445 __init__(ParticleIndexesKey self, std::string const & c, bool is_implicit_add_permitted=True) -> ParticleIndexesKey
2446 __init__(ParticleIndexesKey self, unsigned int i) -> ParticleIndexesKey
2448 _IMP_kernel.ParticleIndexesKey_swiginit(self, _IMP_kernel.new_ParticleIndexesKey(*args))
2452 r"""add_key(std::string sc) -> unsigned int"""
2453 return _IMP_kernel.ParticleIndexesKey_add_key(sc)
2456 def get_key_exists(sc):
2457 r"""get_key_exists(std::string sc) -> bool"""
2458 return _IMP_kernel.ParticleIndexesKey_get_key_exists(sc)
2460 def get_string(self):
2461 r"""get_string(ParticleIndexesKey self) -> std::string const"""
2462 return _IMP_kernel.ParticleIndexesKey_get_string(self)
2464 def __cmp__(self, o):
2465 r"""__cmp__(ParticleIndexesKey self, ParticleIndexesKey o) -> int"""
2466 return _IMP_kernel.ParticleIndexesKey___cmp__(self, o)
2468 def __eq__(self, o):
2469 r"""__eq__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2470 return _IMP_kernel.ParticleIndexesKey___eq__(self, o)
2472 def __ne__(self, o):
2473 r"""__ne__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2474 return _IMP_kernel.ParticleIndexesKey___ne__(self, o)
2476 def __lt__(self, o):
2477 r"""__lt__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2478 return _IMP_kernel.ParticleIndexesKey___lt__(self, o)
2480 def __gt__(self, o):
2481 r"""__gt__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2482 return _IMP_kernel.ParticleIndexesKey___gt__(self, o)
2484 def __ge__(self, o):
2485 r"""__ge__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2486 return _IMP_kernel.ParticleIndexesKey___ge__(self, o)
2488 def __le__(self, o):
2489 r"""__le__(ParticleIndexesKey self, ParticleIndexesKey o) -> bool"""
2490 return _IMP_kernel.ParticleIndexesKey___le__(self, o)
2493 r"""__hash__(ParticleIndexesKey self) -> std::size_t"""
2494 return _IMP_kernel.ParticleIndexesKey___hash__(self)
2496 def show(self, *args):
2497 r"""show(ParticleIndexesKey self, _ostream out=std::cout)"""
2498 return _IMP_kernel.ParticleIndexesKey_show(self, *args)
2501 def add_alias(old_key, new_name):
2502 r"""add_alias(ParticleIndexesKey old_key, std::string new_name) -> ParticleIndexesKey"""
2503 return _IMP_kernel.ParticleIndexesKey_add_alias(old_key, new_name)
2506 def get_number_of_keys():
2507 r"""get_number_of_keys() -> unsigned int"""
2508 return _IMP_kernel.ParticleIndexesKey_get_number_of_keys()
2511 r"""get_index(ParticleIndexesKey self) -> unsigned int"""
2512 return _IMP_kernel.ParticleIndexesKey_get_index(self)
2516 r"""show_all(_ostream out)"""
2517 return _IMP_kernel.ParticleIndexesKey_show_all(out)
2520 def get_all_strings():
2521 r"""get_all_strings() -> IMP::Vector< std::string >"""
2522 return _IMP_kernel.ParticleIndexesKey_get_all_strings()
2525 def get_number_unique():
2526 r"""get_number_unique() -> unsigned int"""
2527 return _IMP_kernel.ParticleIndexesKey_get_number_unique()
2530 r"""__str__(ParticleIndexesKey self) -> std::string"""
2531 return _IMP_kernel.ParticleIndexesKey___str__(self)
2534 r"""__repr__(ParticleIndexesKey self) -> std::string"""
2535 return _IMP_kernel.ParticleIndexesKey___repr__(self)
2536 __swig_destroy__ = _IMP_kernel.delete_ParticleIndexesKey
2539 _IMP_kernel.ParticleIndexesKey_swigregister(ParticleIndexesKey)
2541 r"""Proxy of C++ IMP::Key< 8 > class."""
2543 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2545 def __init__(self, *args):
2547 __init__(ModelKey self) -> ModelKey
2548 __init__(ModelKey self, std::string const & c, bool is_implicit_add_permitted=True) -> ModelKey
2549 __init__(ModelKey self, unsigned int i) -> ModelKey
2551 _IMP_kernel.ModelKey_swiginit(self, _IMP_kernel.new_ModelKey(*args))
2555 r"""add_key(std::string sc) -> unsigned int"""
2556 return _IMP_kernel.ModelKey_add_key(sc)
2559 def get_key_exists(sc):
2560 r"""get_key_exists(std::string sc) -> bool"""
2561 return _IMP_kernel.ModelKey_get_key_exists(sc)
2563 def get_string(self):
2564 r"""get_string(ModelKey self) -> std::string const"""
2565 return _IMP_kernel.ModelKey_get_string(self)
2567 def __cmp__(self, o):
2568 r"""__cmp__(ModelKey self, ModelKey o) -> int"""
2569 return _IMP_kernel.ModelKey___cmp__(self, o)
2571 def __eq__(self, o):
2572 r"""__eq__(ModelKey self, ModelKey o) -> bool"""
2573 return _IMP_kernel.ModelKey___eq__(self, o)
2575 def __ne__(self, o):
2576 r"""__ne__(ModelKey self, ModelKey o) -> bool"""
2577 return _IMP_kernel.ModelKey___ne__(self, o)
2579 def __lt__(self, o):
2580 r"""__lt__(ModelKey self, ModelKey o) -> bool"""
2581 return _IMP_kernel.ModelKey___lt__(self, o)
2583 def __gt__(self, o):
2584 r"""__gt__(ModelKey self, ModelKey o) -> bool"""
2585 return _IMP_kernel.ModelKey___gt__(self, o)
2587 def __ge__(self, o):
2588 r"""__ge__(ModelKey self, ModelKey o) -> bool"""
2589 return _IMP_kernel.ModelKey___ge__(self, o)
2591 def __le__(self, o):
2592 r"""__le__(ModelKey self, ModelKey o) -> bool"""
2593 return _IMP_kernel.ModelKey___le__(self, o)
2596 r"""__hash__(ModelKey self) -> std::size_t"""
2597 return _IMP_kernel.ModelKey___hash__(self)
2599 def show(self, *args):
2600 r"""show(ModelKey self, _ostream out=std::cout)"""
2601 return _IMP_kernel.ModelKey_show(self, *args)
2604 def add_alias(old_key, new_name):
2605 r"""add_alias(ModelKey old_key, std::string new_name) -> ModelKey"""
2606 return _IMP_kernel.ModelKey_add_alias(old_key, new_name)
2609 def get_number_of_keys():
2610 r"""get_number_of_keys() -> unsigned int"""
2611 return _IMP_kernel.ModelKey_get_number_of_keys()
2614 r"""get_index(ModelKey self) -> unsigned int"""
2615 return _IMP_kernel.ModelKey_get_index(self)
2619 r"""show_all(_ostream out)"""
2620 return _IMP_kernel.ModelKey_show_all(out)
2623 def get_all_strings():
2624 r"""get_all_strings() -> IMP::Vector< std::string >"""
2625 return _IMP_kernel.ModelKey_get_all_strings()
2628 def get_number_unique():
2629 r"""get_number_unique() -> unsigned int"""
2630 return _IMP_kernel.ModelKey_get_number_unique()
2633 r"""__str__(ModelKey self) -> std::string"""
2634 return _IMP_kernel.ModelKey___str__(self)
2637 r"""__repr__(ModelKey self) -> std::string"""
2638 return _IMP_kernel.ModelKey___repr__(self)
2639 __swig_destroy__ = _IMP_kernel.delete_ModelKey
2642 _IMP_kernel.ModelKey_swigregister(ModelKey)
2644 r"""Proxy of C++ IMP::Key< 11 > class."""
2646 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2648 def __init__(self, *args):
2650 __init__(TriggerKey self) -> TriggerKey
2651 __init__(TriggerKey self, std::string const & c, bool is_implicit_add_permitted=True) -> TriggerKey
2652 __init__(TriggerKey self, unsigned int i) -> TriggerKey
2654 _IMP_kernel.TriggerKey_swiginit(self, _IMP_kernel.new_TriggerKey(*args))
2658 r"""add_key(std::string sc) -> unsigned int"""
2659 return _IMP_kernel.TriggerKey_add_key(sc)
2662 def get_key_exists(sc):
2663 r"""get_key_exists(std::string sc) -> bool"""
2664 return _IMP_kernel.TriggerKey_get_key_exists(sc)
2666 def get_string(self):
2667 r"""get_string(TriggerKey self) -> std::string const"""
2668 return _IMP_kernel.TriggerKey_get_string(self)
2670 def __cmp__(self, o):
2671 r"""__cmp__(TriggerKey self, TriggerKey o) -> int"""
2672 return _IMP_kernel.TriggerKey___cmp__(self, o)
2674 def __eq__(self, o):
2675 r"""__eq__(TriggerKey self, TriggerKey o) -> bool"""
2676 return _IMP_kernel.TriggerKey___eq__(self, o)
2678 def __ne__(self, o):
2679 r"""__ne__(TriggerKey self, TriggerKey o) -> bool"""
2680 return _IMP_kernel.TriggerKey___ne__(self, o)
2682 def __lt__(self, o):
2683 r"""__lt__(TriggerKey self, TriggerKey o) -> bool"""
2684 return _IMP_kernel.TriggerKey___lt__(self, o)
2686 def __gt__(self, o):
2687 r"""__gt__(TriggerKey self, TriggerKey o) -> bool"""
2688 return _IMP_kernel.TriggerKey___gt__(self, o)
2690 def __ge__(self, o):
2691 r"""__ge__(TriggerKey self, TriggerKey o) -> bool"""
2692 return _IMP_kernel.TriggerKey___ge__(self, o)
2694 def __le__(self, o):
2695 r"""__le__(TriggerKey self, TriggerKey o) -> bool"""
2696 return _IMP_kernel.TriggerKey___le__(self, o)
2699 r"""__hash__(TriggerKey self) -> std::size_t"""
2700 return _IMP_kernel.TriggerKey___hash__(self)
2702 def show(self, *args):
2703 r"""show(TriggerKey self, _ostream out=std::cout)"""
2704 return _IMP_kernel.TriggerKey_show(self, *args)
2707 def add_alias(old_key, new_name):
2708 r"""add_alias(TriggerKey old_key, std::string new_name) -> TriggerKey"""
2709 return _IMP_kernel.TriggerKey_add_alias(old_key, new_name)
2712 def get_number_of_keys():
2713 r"""get_number_of_keys() -> unsigned int"""
2714 return _IMP_kernel.TriggerKey_get_number_of_keys()
2717 r"""get_index(TriggerKey self) -> unsigned int"""
2718 return _IMP_kernel.TriggerKey_get_index(self)
2722 r"""show_all(_ostream out)"""
2723 return _IMP_kernel.TriggerKey_show_all(out)
2726 def get_all_strings():
2727 r"""get_all_strings() -> IMP::Vector< std::string >"""
2728 return _IMP_kernel.TriggerKey_get_all_strings()
2731 def get_number_unique():
2732 r"""get_number_unique() -> unsigned int"""
2733 return _IMP_kernel.TriggerKey_get_number_unique()
2736 r"""__str__(TriggerKey self) -> std::string"""
2737 return _IMP_kernel.TriggerKey___str__(self)
2740 r"""__repr__(TriggerKey self) -> std::string"""
2741 return _IMP_kernel.TriggerKey___repr__(self)
2742 __swig_destroy__ = _IMP_kernel.delete_TriggerKey
2745 _IMP_kernel.TriggerKey_swigregister(TriggerKey)
2747 r"""Proxy of C++ IMP::Index< IMP::ParticleIndexTag > class."""
2749 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2751 def __init__(self, *args):
2753 __init__(ParticleIndex self, int i) -> ParticleIndex
2754 __init__(ParticleIndex self) -> ParticleIndex
2756 _IMP_kernel.ParticleIndex_swiginit(self, _IMP_kernel.new_ParticleIndex(*args))
2759 r"""get_index(ParticleIndex self) -> int"""
2760 return _IMP_kernel.ParticleIndex_get_index(self)
2762 def __cmp__(self, o):
2763 r"""__cmp__(ParticleIndex self, ParticleIndex o) -> int"""
2764 return _IMP_kernel.ParticleIndex___cmp__(self, o)
2766 def __eq__(self, o):
2767 r"""__eq__(ParticleIndex self, ParticleIndex o) -> bool"""
2768 return _IMP_kernel.ParticleIndex___eq__(self, o)
2770 def __ne__(self, o):
2771 r"""__ne__(ParticleIndex self, ParticleIndex o) -> bool"""
2772 return _IMP_kernel.ParticleIndex___ne__(self, o)
2774 def __lt__(self, o):
2775 r"""__lt__(ParticleIndex self, ParticleIndex o) -> bool"""
2776 return _IMP_kernel.ParticleIndex___lt__(self, o)
2778 def __gt__(self, o):
2779 r"""__gt__(ParticleIndex self, ParticleIndex o) -> bool"""
2780 return _IMP_kernel.ParticleIndex___gt__(self, o)
2782 def __ge__(self, o):
2783 r"""__ge__(ParticleIndex self, ParticleIndex o) -> bool"""
2784 return _IMP_kernel.ParticleIndex___ge__(self, o)
2786 def __le__(self, o):
2787 r"""__le__(ParticleIndex self, ParticleIndex o) -> bool"""
2788 return _IMP_kernel.ParticleIndex___le__(self, o)
2790 def show(self, *args):
2791 r"""show(ParticleIndex self, _ostream out=std::cout)"""
2792 return _IMP_kernel.ParticleIndex_show(self, *args)
2795 r"""__hash__(ParticleIndex self) -> std::size_t"""
2796 return _IMP_kernel.ParticleIndex___hash__(self)
2799 r"""__str__(ParticleIndex self) -> std::string"""
2800 return _IMP_kernel.ParticleIndex___str__(self)
2803 r"""__repr__(ParticleIndex self) -> std::string"""
2804 return _IMP_kernel.ParticleIndex___repr__(self)
2805 __swig_destroy__ = _IMP_kernel.delete_ParticleIndex
2808 _IMP_kernel.ParticleIndex_swigregister(ParticleIndex)
2810 r"""Proxy of C++ IMP::Key< 10 > class."""
2812 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2814 def __init__(self, *args):
2816 __init__(FloatsKey self) -> FloatsKey
2817 __init__(FloatsKey self, std::string const & c, bool is_implicit_add_permitted=True) -> FloatsKey
2818 __init__(FloatsKey self, unsigned int i) -> FloatsKey
2820 _IMP_kernel.FloatsKey_swiginit(self, _IMP_kernel.new_FloatsKey(*args))
2824 r"""add_key(std::string sc) -> unsigned int"""
2825 return _IMP_kernel.FloatsKey_add_key(sc)
2828 def get_key_exists(sc):
2829 r"""get_key_exists(std::string sc) -> bool"""
2830 return _IMP_kernel.FloatsKey_get_key_exists(sc)
2832 def get_string(self):
2833 r"""get_string(FloatsKey self) -> std::string const"""
2834 return _IMP_kernel.FloatsKey_get_string(self)
2836 def __cmp__(self, o):
2837 r"""__cmp__(FloatsKey self, FloatsKey o) -> int"""
2838 return _IMP_kernel.FloatsKey___cmp__(self, o)
2840 def __eq__(self, o):
2841 r"""__eq__(FloatsKey self, FloatsKey o) -> bool"""
2842 return _IMP_kernel.FloatsKey___eq__(self, o)
2844 def __ne__(self, o):
2845 r"""__ne__(FloatsKey self, FloatsKey o) -> bool"""
2846 return _IMP_kernel.FloatsKey___ne__(self, o)
2848 def __lt__(self, o):
2849 r"""__lt__(FloatsKey self, FloatsKey o) -> bool"""
2850 return _IMP_kernel.FloatsKey___lt__(self, o)
2852 def __gt__(self, o):
2853 r"""__gt__(FloatsKey self, FloatsKey o) -> bool"""
2854 return _IMP_kernel.FloatsKey___gt__(self, o)
2856 def __ge__(self, o):
2857 r"""__ge__(FloatsKey self, FloatsKey o) -> bool"""
2858 return _IMP_kernel.FloatsKey___ge__(self, o)
2860 def __le__(self, o):
2861 r"""__le__(FloatsKey self, FloatsKey o) -> bool"""
2862 return _IMP_kernel.FloatsKey___le__(self, o)
2865 r"""__hash__(FloatsKey self) -> std::size_t"""
2866 return _IMP_kernel.FloatsKey___hash__(self)
2868 def show(self, *args):
2869 r"""show(FloatsKey self, _ostream out=std::cout)"""
2870 return _IMP_kernel.FloatsKey_show(self, *args)
2873 def add_alias(old_key, new_name):
2874 r"""add_alias(FloatsKey old_key, std::string new_name) -> FloatsKey"""
2875 return _IMP_kernel.FloatsKey_add_alias(old_key, new_name)
2878 def get_number_of_keys():
2879 r"""get_number_of_keys() -> unsigned int"""
2880 return _IMP_kernel.FloatsKey_get_number_of_keys()
2883 r"""get_index(FloatsKey self) -> unsigned int"""
2884 return _IMP_kernel.FloatsKey_get_index(self)
2888 r"""show_all(_ostream out)"""
2889 return _IMP_kernel.FloatsKey_show_all(out)
2892 def get_all_strings():
2893 r"""get_all_strings() -> IMP::Vector< std::string >"""
2894 return _IMP_kernel.FloatsKey_get_all_strings()
2897 def get_number_unique():
2898 r"""get_number_unique() -> unsigned int"""
2899 return _IMP_kernel.FloatsKey_get_number_unique()
2902 r"""__str__(FloatsKey self) -> std::string"""
2903 return _IMP_kernel.FloatsKey___str__(self)
2906 r"""__repr__(FloatsKey self) -> std::string"""
2907 return _IMP_kernel.FloatsKey___repr__(self)
2908 __swig_destroy__ = _IMP_kernel.delete_FloatsKey
2911 _IMP_kernel.FloatsKey_swigregister(FloatsKey)
2913 r"""Proxy of C++ IMP::Key< 12 > class."""
2915 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
2917 def __init__(self, *args):
2919 __init__(SparseStringKey self) -> SparseStringKey
2920 __init__(SparseStringKey self, std::string const & c, bool is_implicit_add_permitted=True) -> SparseStringKey
2921 __init__(SparseStringKey self, unsigned int i) -> SparseStringKey
2923 _IMP_kernel.SparseStringKey_swiginit(self, _IMP_kernel.new_SparseStringKey(*args))
2927 r"""add_key(std::string sc) -> unsigned int"""
2928 return _IMP_kernel.SparseStringKey_add_key(sc)
2931 def get_key_exists(sc):
2932 r"""get_key_exists(std::string sc) -> bool"""
2933 return _IMP_kernel.SparseStringKey_get_key_exists(sc)
2935 def get_string(self):
2936 r"""get_string(SparseStringKey self) -> std::string const"""
2937 return _IMP_kernel.SparseStringKey_get_string(self)
2939 def __cmp__(self, o):
2940 r"""__cmp__(SparseStringKey self, SparseStringKey o) -> int"""
2941 return _IMP_kernel.SparseStringKey___cmp__(self, o)
2943 def __eq__(self, o):
2944 r"""__eq__(SparseStringKey self, SparseStringKey o) -> bool"""
2945 return _IMP_kernel.SparseStringKey___eq__(self, o)
2947 def __ne__(self, o):
2948 r"""__ne__(SparseStringKey self, SparseStringKey o) -> bool"""
2949 return _IMP_kernel.SparseStringKey___ne__(self, o)
2951 def __lt__(self, o):
2952 r"""__lt__(SparseStringKey self, SparseStringKey o) -> bool"""
2953 return _IMP_kernel.SparseStringKey___lt__(self, o)
2955 def __gt__(self, o):
2956 r"""__gt__(SparseStringKey self, SparseStringKey o) -> bool"""
2957 return _IMP_kernel.SparseStringKey___gt__(self, o)
2959 def __ge__(self, o):
2960 r"""__ge__(SparseStringKey self, SparseStringKey o) -> bool"""
2961 return _IMP_kernel.SparseStringKey___ge__(self, o)
2963 def __le__(self, o):
2964 r"""__le__(SparseStringKey self, SparseStringKey o) -> bool"""
2965 return _IMP_kernel.SparseStringKey___le__(self, o)
2968 r"""__hash__(SparseStringKey self) -> std::size_t"""
2969 return _IMP_kernel.SparseStringKey___hash__(self)
2971 def show(self, *args):
2972 r"""show(SparseStringKey self, _ostream out=std::cout)"""
2973 return _IMP_kernel.SparseStringKey_show(self, *args)
2976 def add_alias(old_key, new_name):
2977 r"""add_alias(SparseStringKey old_key, std::string new_name) -> SparseStringKey"""
2978 return _IMP_kernel.SparseStringKey_add_alias(old_key, new_name)
2981 def get_number_of_keys():
2982 r"""get_number_of_keys() -> unsigned int"""
2983 return _IMP_kernel.SparseStringKey_get_number_of_keys()
2986 r"""get_index(SparseStringKey self) -> unsigned int"""
2987 return _IMP_kernel.SparseStringKey_get_index(self)
2991 r"""show_all(_ostream out)"""
2992 return _IMP_kernel.SparseStringKey_show_all(out)
2995 def get_all_strings():
2996 r"""get_all_strings() -> IMP::Vector< std::string >"""
2997 return _IMP_kernel.SparseStringKey_get_all_strings()
3000 def get_number_unique():
3001 r"""get_number_unique() -> unsigned int"""
3002 return _IMP_kernel.SparseStringKey_get_number_unique()
3005 r"""__str__(SparseStringKey self) -> std::string"""
3006 return _IMP_kernel.SparseStringKey___str__(self)
3009 r"""__repr__(SparseStringKey self) -> std::string"""
3010 return _IMP_kernel.SparseStringKey___repr__(self)
3011 __swig_destroy__ = _IMP_kernel.delete_SparseStringKey
3014 _IMP_kernel.SparseStringKey_swigregister(SparseStringKey)
3016 r"""Proxy of C++ IMP::Key< 13 > class."""
3018 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3020 def __init__(self, *args):
3022 __init__(SparseIntKey self) -> SparseIntKey
3023 __init__(SparseIntKey self, std::string const & c, bool is_implicit_add_permitted=True) -> SparseIntKey
3024 __init__(SparseIntKey self, unsigned int i) -> SparseIntKey
3026 _IMP_kernel.SparseIntKey_swiginit(self, _IMP_kernel.new_SparseIntKey(*args))
3030 r"""add_key(std::string sc) -> unsigned int"""
3031 return _IMP_kernel.SparseIntKey_add_key(sc)
3034 def get_key_exists(sc):
3035 r"""get_key_exists(std::string sc) -> bool"""
3036 return _IMP_kernel.SparseIntKey_get_key_exists(sc)
3038 def get_string(self):
3039 r"""get_string(SparseIntKey self) -> std::string const"""
3040 return _IMP_kernel.SparseIntKey_get_string(self)
3042 def __cmp__(self, o):
3043 r"""__cmp__(SparseIntKey self, SparseIntKey o) -> int"""
3044 return _IMP_kernel.SparseIntKey___cmp__(self, o)
3046 def __eq__(self, o):
3047 r"""__eq__(SparseIntKey self, SparseIntKey o) -> bool"""
3048 return _IMP_kernel.SparseIntKey___eq__(self, o)
3050 def __ne__(self, o):
3051 r"""__ne__(SparseIntKey self, SparseIntKey o) -> bool"""
3052 return _IMP_kernel.SparseIntKey___ne__(self, o)
3054 def __lt__(self, o):
3055 r"""__lt__(SparseIntKey self, SparseIntKey o) -> bool"""
3056 return _IMP_kernel.SparseIntKey___lt__(self, o)
3058 def __gt__(self, o):
3059 r"""__gt__(SparseIntKey self, SparseIntKey o) -> bool"""
3060 return _IMP_kernel.SparseIntKey___gt__(self, o)
3062 def __ge__(self, o):
3063 r"""__ge__(SparseIntKey self, SparseIntKey o) -> bool"""
3064 return _IMP_kernel.SparseIntKey___ge__(self, o)
3066 def __le__(self, o):
3067 r"""__le__(SparseIntKey self, SparseIntKey o) -> bool"""
3068 return _IMP_kernel.SparseIntKey___le__(self, o)
3071 r"""__hash__(SparseIntKey self) -> std::size_t"""
3072 return _IMP_kernel.SparseIntKey___hash__(self)
3074 def show(self, *args):
3075 r"""show(SparseIntKey self, _ostream out=std::cout)"""
3076 return _IMP_kernel.SparseIntKey_show(self, *args)
3079 def add_alias(old_key, new_name):
3080 r"""add_alias(SparseIntKey old_key, std::string new_name) -> SparseIntKey"""
3081 return _IMP_kernel.SparseIntKey_add_alias(old_key, new_name)
3084 def get_number_of_keys():
3085 r"""get_number_of_keys() -> unsigned int"""
3086 return _IMP_kernel.SparseIntKey_get_number_of_keys()
3089 r"""get_index(SparseIntKey self) -> unsigned int"""
3090 return _IMP_kernel.SparseIntKey_get_index(self)
3094 r"""show_all(_ostream out)"""
3095 return _IMP_kernel.SparseIntKey_show_all(out)
3098 def get_all_strings():
3099 r"""get_all_strings() -> IMP::Vector< std::string >"""
3100 return _IMP_kernel.SparseIntKey_get_all_strings()
3103 def get_number_unique():
3104 r"""get_number_unique() -> unsigned int"""
3105 return _IMP_kernel.SparseIntKey_get_number_unique()
3108 r"""__str__(SparseIntKey self) -> std::string"""
3109 return _IMP_kernel.SparseIntKey___str__(self)
3112 r"""__repr__(SparseIntKey self) -> std::string"""
3113 return _IMP_kernel.SparseIntKey___repr__(self)
3114 __swig_destroy__ = _IMP_kernel.delete_SparseIntKey
3117 _IMP_kernel.SparseIntKey_swigregister(SparseIntKey)
3119 r"""Proxy of C++ IMP::Key< 14 > class."""
3121 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3123 def __init__(self, *args):
3125 __init__(SparseFloatKey self) -> SparseFloatKey
3126 __init__(SparseFloatKey self, std::string const & c, bool is_implicit_add_permitted=True) -> SparseFloatKey
3127 __init__(SparseFloatKey self, unsigned int i) -> SparseFloatKey
3129 _IMP_kernel.SparseFloatKey_swiginit(self, _IMP_kernel.new_SparseFloatKey(*args))
3133 r"""add_key(std::string sc) -> unsigned int"""
3134 return _IMP_kernel.SparseFloatKey_add_key(sc)
3137 def get_key_exists(sc):
3138 r"""get_key_exists(std::string sc) -> bool"""
3139 return _IMP_kernel.SparseFloatKey_get_key_exists(sc)
3141 def get_string(self):
3142 r"""get_string(SparseFloatKey self) -> std::string const"""
3143 return _IMP_kernel.SparseFloatKey_get_string(self)
3145 def __cmp__(self, o):
3146 r"""__cmp__(SparseFloatKey self, SparseFloatKey o) -> int"""
3147 return _IMP_kernel.SparseFloatKey___cmp__(self, o)
3149 def __eq__(self, o):
3150 r"""__eq__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3151 return _IMP_kernel.SparseFloatKey___eq__(self, o)
3153 def __ne__(self, o):
3154 r"""__ne__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3155 return _IMP_kernel.SparseFloatKey___ne__(self, o)
3157 def __lt__(self, o):
3158 r"""__lt__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3159 return _IMP_kernel.SparseFloatKey___lt__(self, o)
3161 def __gt__(self, o):
3162 r"""__gt__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3163 return _IMP_kernel.SparseFloatKey___gt__(self, o)
3165 def __ge__(self, o):
3166 r"""__ge__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3167 return _IMP_kernel.SparseFloatKey___ge__(self, o)
3169 def __le__(self, o):
3170 r"""__le__(SparseFloatKey self, SparseFloatKey o) -> bool"""
3171 return _IMP_kernel.SparseFloatKey___le__(self, o)
3174 r"""__hash__(SparseFloatKey self) -> std::size_t"""
3175 return _IMP_kernel.SparseFloatKey___hash__(self)
3177 def show(self, *args):
3178 r"""show(SparseFloatKey self, _ostream out=std::cout)"""
3179 return _IMP_kernel.SparseFloatKey_show(self, *args)
3182 def add_alias(old_key, new_name):
3183 r"""add_alias(SparseFloatKey old_key, std::string new_name) -> SparseFloatKey"""
3184 return _IMP_kernel.SparseFloatKey_add_alias(old_key, new_name)
3187 def get_number_of_keys():
3188 r"""get_number_of_keys() -> unsigned int"""
3189 return _IMP_kernel.SparseFloatKey_get_number_of_keys()
3192 r"""get_index(SparseFloatKey self) -> unsigned int"""
3193 return _IMP_kernel.SparseFloatKey_get_index(self)
3197 r"""show_all(_ostream out)"""
3198 return _IMP_kernel.SparseFloatKey_show_all(out)
3201 def get_all_strings():
3202 r"""get_all_strings() -> IMP::Vector< std::string >"""
3203 return _IMP_kernel.SparseFloatKey_get_all_strings()
3206 def get_number_unique():
3207 r"""get_number_unique() -> unsigned int"""
3208 return _IMP_kernel.SparseFloatKey_get_number_unique()
3211 r"""__str__(SparseFloatKey self) -> std::string"""
3212 return _IMP_kernel.SparseFloatKey___str__(self)
3215 r"""__repr__(SparseFloatKey self) -> std::string"""
3216 return _IMP_kernel.SparseFloatKey___repr__(self)
3217 __swig_destroy__ = _IMP_kernel.delete_SparseFloatKey
3220 _IMP_kernel.SparseFloatKey_swigregister(SparseFloatKey)
3222 r"""Proxy of C++ IMP::Key< 15 > class."""
3224 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3226 def __init__(self, *args):
3228 __init__(SparseParticleIndexKey self) -> SparseParticleIndexKey
3229 __init__(SparseParticleIndexKey self, std::string const & c, bool is_implicit_add_permitted=True) -> SparseParticleIndexKey
3230 __init__(SparseParticleIndexKey self, unsigned int i) -> SparseParticleIndexKey
3232 _IMP_kernel.SparseParticleIndexKey_swiginit(self, _IMP_kernel.new_SparseParticleIndexKey(*args))
3236 r"""add_key(std::string sc) -> unsigned int"""
3237 return _IMP_kernel.SparseParticleIndexKey_add_key(sc)
3240 def get_key_exists(sc):
3241 r"""get_key_exists(std::string sc) -> bool"""
3242 return _IMP_kernel.SparseParticleIndexKey_get_key_exists(sc)
3244 def get_string(self):
3245 r"""get_string(SparseParticleIndexKey self) -> std::string const"""
3246 return _IMP_kernel.SparseParticleIndexKey_get_string(self)
3248 def __cmp__(self, o):
3249 r"""__cmp__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> int"""
3250 return _IMP_kernel.SparseParticleIndexKey___cmp__(self, o)
3252 def __eq__(self, o):
3253 r"""__eq__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3254 return _IMP_kernel.SparseParticleIndexKey___eq__(self, o)
3256 def __ne__(self, o):
3257 r"""__ne__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3258 return _IMP_kernel.SparseParticleIndexKey___ne__(self, o)
3260 def __lt__(self, o):
3261 r"""__lt__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3262 return _IMP_kernel.SparseParticleIndexKey___lt__(self, o)
3264 def __gt__(self, o):
3265 r"""__gt__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3266 return _IMP_kernel.SparseParticleIndexKey___gt__(self, o)
3268 def __ge__(self, o):
3269 r"""__ge__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3270 return _IMP_kernel.SparseParticleIndexKey___ge__(self, o)
3272 def __le__(self, o):
3273 r"""__le__(SparseParticleIndexKey self, SparseParticleIndexKey o) -> bool"""
3274 return _IMP_kernel.SparseParticleIndexKey___le__(self, o)
3277 r"""__hash__(SparseParticleIndexKey self) -> std::size_t"""
3278 return _IMP_kernel.SparseParticleIndexKey___hash__(self)
3280 def show(self, *args):
3281 r"""show(SparseParticleIndexKey self, _ostream out=std::cout)"""
3282 return _IMP_kernel.SparseParticleIndexKey_show(self, *args)
3285 def add_alias(old_key, new_name):
3286 r"""add_alias(SparseParticleIndexKey old_key, std::string new_name) -> SparseParticleIndexKey"""
3287 return _IMP_kernel.SparseParticleIndexKey_add_alias(old_key, new_name)
3290 def get_number_of_keys():
3291 r"""get_number_of_keys() -> unsigned int"""
3292 return _IMP_kernel.SparseParticleIndexKey_get_number_of_keys()
3295 r"""get_index(SparseParticleIndexKey self) -> unsigned int"""
3296 return _IMP_kernel.SparseParticleIndexKey_get_index(self)
3300 r"""show_all(_ostream out)"""
3301 return _IMP_kernel.SparseParticleIndexKey_show_all(out)
3304 def get_all_strings():
3305 r"""get_all_strings() -> IMP::Vector< std::string >"""
3306 return _IMP_kernel.SparseParticleIndexKey_get_all_strings()
3309 def get_number_unique():
3310 r"""get_number_unique() -> unsigned int"""
3311 return _IMP_kernel.SparseParticleIndexKey_get_number_unique()
3314 r"""__str__(SparseParticleIndexKey self) -> std::string"""
3315 return _IMP_kernel.SparseParticleIndexKey___str__(self)
3318 r"""__repr__(SparseParticleIndexKey self) -> std::string"""
3319 return _IMP_kernel.SparseParticleIndexKey___repr__(self)
3320 __swig_destroy__ = _IMP_kernel.delete_SparseParticleIndexKey
3323 _IMP_kernel.SparseParticleIndexKey_swigregister(SparseParticleIndexKey)
3332 class FloatIndex(_Value):
3333 r"""Proxy of C++ IMP::FloatIndex class."""
3335 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3337 def __init__(self, *args):
3338 r"""__init__(FloatIndex self, ParticleIndex i0=ParticleIndex(), FloatKey i1=FloatKey()) -> FloatIndex"""
3339 _IMP_kernel.FloatIndex_swiginit(self, _IMP_kernel.new_FloatIndex(*args))
3342 r"""__hash__(FloatIndex self) -> std::size_t"""
3343 return _IMP_kernel.FloatIndex___hash__(self)
3345 def show(self, *args):
3346 r"""show(FloatIndex self, _ostream out=std::cout)"""
3347 return _IMP_kernel.FloatIndex_show(self, *args)
3349 def __cmp__(self, o):
3350 r"""__cmp__(FloatIndex self, FloatIndex o) -> int"""
3351 return _IMP_kernel.FloatIndex___cmp__(self, o)
3353 def __eq__(self, o):
3354 r"""__eq__(FloatIndex self, FloatIndex o) -> bool"""
3355 return _IMP_kernel.FloatIndex___eq__(self, o)
3357 def __ne__(self, o):
3358 r"""__ne__(FloatIndex self, FloatIndex o) -> bool"""
3359 return _IMP_kernel.FloatIndex___ne__(self, o)
3361 def __lt__(self, o):
3362 r"""__lt__(FloatIndex self, FloatIndex o) -> bool"""
3363 return _IMP_kernel.FloatIndex___lt__(self, o)
3365 def __gt__(self, o):
3366 r"""__gt__(FloatIndex self, FloatIndex o) -> bool"""
3367 return _IMP_kernel.FloatIndex___gt__(self, o)
3369 def __ge__(self, o):
3370 r"""__ge__(FloatIndex self, FloatIndex o) -> bool"""
3371 return _IMP_kernel.FloatIndex___ge__(self, o)
3373 def __le__(self, o):
3374 r"""__le__(FloatIndex self, FloatIndex o) -> bool"""
3375 return _IMP_kernel.FloatIndex___le__(self, o)
3377 def get_particle(self):
3378 r"""get_particle(FloatIndex self) -> ParticleIndex const &"""
3379 return _IMP_kernel.FloatIndex_get_particle(self)
3381 def set_particle(self, v):
3382 r"""set_particle(FloatIndex self, ParticleIndex const & v)"""
3383 return _IMP_kernel.FloatIndex_set_particle(self, v)
3386 r"""get_key(FloatIndex self) -> FloatKey const &"""
3387 return _IMP_kernel.FloatIndex_get_key(self)
3389 def set_key(self, v):
3390 r"""set_key(FloatIndex self, FloatKey const & v)"""
3391 return _IMP_kernel.FloatIndex_set_key(self, v)
3394 r"""__str__(FloatIndex self) -> std::string"""
3395 return _IMP_kernel.FloatIndex___str__(self)
3398 r"""__repr__(FloatIndex self) -> std::string"""
3399 return _IMP_kernel.FloatIndex___repr__(self)
3400 __swig_destroy__ = _IMP_kernel.delete_FloatIndex
3403 _IMP_kernel.FloatIndex_swigregister(FloatIndex)
3404 class _ParticleIndexTag(object):
3405 r"""Proxy of C++ IMP::ParticleIndexTag class."""
3407 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3408 __repr__ = _swig_repr
3411 r"""__init__(_ParticleIndexTag self) -> _ParticleIndexTag"""
3412 _IMP_kernel._ParticleIndexTag_swiginit(self, _IMP_kernel.new__ParticleIndexTag())
3413 __swig_destroy__ = _IMP_kernel.delete__ParticleIndexTag
3416 _IMP_kernel._ParticleIndexTag_swigregister(_ParticleIndexTag)
3417 class ModelObject(Object):
3418 r"""Proxy of C++ IMP::ModelObject class."""
3420 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3422 def __init__(self, *args):
3424 __init__(ModelObject self, Model m, std::string name) -> ModelObject
3425 __init__(ModelObject self) -> ModelObject
3427 if self.__class__ == ModelObject:
3431 _IMP_kernel.ModelObject_swiginit(self, _IMP_kernel.new_ModelObject(_self, *args))
3433 if self.__class__ != ModelObject:
3434 _director_objects.register(self)
3438 __swig_destroy__ = _IMP_kernel.delete_ModelObject
3440 def get_model(self):
3441 m = _IMP_kernel.ModelObject_get_model(self)
3442 if m
in _models_set:
3443 m = _models_set_get(m)
3448 def get_inputs(self):
3449 r"""get_inputs(ModelObject self) -> IMP::ModelObjectsTemp"""
3450 return _IMP_kernel.ModelObject_get_inputs(self)
3452 def get_outputs(self):
3453 r"""get_outputs(ModelObject self) -> IMP::ModelObjectsTemp"""
3454 return _IMP_kernel.ModelObject_get_outputs(self)
3456 def get_interactions(self):
3457 r"""get_interactions(ModelObject self) -> IMP::ModelObjectsTemps"""
3458 return _IMP_kernel.ModelObject_get_interactions(self)
3460 def get_has_dependencies(self):
3461 r"""get_has_dependencies(ModelObject self) -> bool"""
3462 return _IMP_kernel.ModelObject_get_has_dependencies(self)
3464 def set_has_dependencies(self, tf):
3465 r"""set_has_dependencies(ModelObject self, bool tf)"""
3466 return _IMP_kernel.ModelObject_set_has_dependencies(self, tf)
3468 def set_has_required_score_states(self, tf):
3469 r"""set_has_required_score_states(ModelObject self, bool tf)"""
3470 return _IMP_kernel.ModelObject_set_has_required_score_states(self, tf)
3472 def get_has_required_score_states(self):
3473 r"""get_has_required_score_states(ModelObject self) -> bool"""
3474 return _IMP_kernel.ModelObject_get_has_required_score_states(self)
3476 def get_required_score_states(self):
3477 r"""get_required_score_states(ModelObject self) -> IMP::ScoreStatesTemp const &"""
3478 return _IMP_kernel.ModelObject_get_required_score_states(self)
3480 def handle_set_has_required_score_states(self, arg0):
3481 r"""handle_set_has_required_score_states(ModelObject self, bool arg0)"""
3482 return _IMP_kernel.ModelObject_handle_set_has_required_score_states(self, arg0)
3484 def do_get_inputs(self):
3485 r"""do_get_inputs(ModelObject self) -> IMP::ModelObjectsTemp"""
3486 return _IMP_kernel.ModelObject_do_get_inputs(self)
3488 def do_get_outputs(self):
3489 r"""do_get_outputs(ModelObject self) -> IMP::ModelObjectsTemp"""
3490 return _IMP_kernel.ModelObject_do_get_outputs(self)
3492 def do_get_interactions(self):
3493 r"""do_get_interactions(ModelObject self) -> IMP::ModelObjectsTemps"""
3494 return _IMP_kernel.ModelObject_do_get_interactions(self)
3497 r"""__str__(ModelObject self) -> std::string"""
3498 return _IMP_kernel.ModelObject___str__(self)
3501 r"""__repr__(ModelObject self) -> std::string"""
3502 return _IMP_kernel.ModelObject___repr__(self)
3506 return _object_cast_to_ModelObject(o)
3509 def get_type_name(self):
3510 return self.__class__.__name__
3511 def do_show(self, out):
3513 def get_version_info(self):
3515 return VersionInfo(self.__module__,
3522 return _object_cast_to_ModelObject(o)
3524 def __disown__(self):
3526 _IMP_kernel.disown_ModelObject(self)
3527 return weakref.proxy(self)
3529 def do_destroy(self):
3530 r"""do_destroy(ModelObject self)"""
3531 return _IMP_kernel.ModelObject_do_destroy(self)
3534 _IMP_kernel.ModelObject_swigregister(ModelObject)
3535 cvar = _IMP_kernel.cvar
3536 NO_MAX = cvar.NO_MAX
3537 BAD_SCORE = cvar.BAD_SCORE
3539 class _ParticleInputs(object):
3540 r"""Proxy of C++ IMP::ParticleInputs class."""
3542 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3544 def __init__(self, *args, **kwargs):
3545 raise AttributeError(
"No constructor defined - class is abstract")
3546 __repr__ = _swig_repr
3548 def get_inputs(self, m, pis):
3549 r"""get_inputs(_ParticleInputs self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3550 return _IMP_kernel._ParticleInputs_get_inputs(self, m, pis)
3553 _IMP_kernel._ParticleInputs_swigregister(_ParticleInputs)
3554 class _ParticleOutputs(object):
3555 r"""Proxy of C++ IMP::ParticleOutputs class."""
3557 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3559 def __init__(self, *args, **kwargs):
3560 raise AttributeError(
"No constructor defined - class is abstract")
3561 __repr__ = _swig_repr
3563 def get_outputs(self, m, pis):
3564 r"""get_outputs(_ParticleOutputs self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
3565 return _IMP_kernel._ParticleOutputs_get_outputs(self, m, pis)
3568 _IMP_kernel._ParticleOutputs_swigregister(_ParticleOutputs)
3571 r"""get_input_particles(IMP::ModelObjectsTemp const & mos) -> IMP::ParticlesTemp"""
3572 return _IMP_kernel.get_input_particles(mos)
3575 r"""get_input_containers(IMP::ModelObjectsTemp const & mos) -> IMP::ContainersTemp"""
3576 return _IMP_kernel.get_input_containers(mos)
3579 r"""get_output_particles(IMP::ModelObjectsTemp const & mos) -> IMP::ParticlesTemp"""
3580 return _IMP_kernel.get_output_particles(mos)
3583 r"""get_output_containers(IMP::ModelObjectsTemp const & mos) -> IMP::ContainersTemp"""
3584 return _IMP_kernel.get_output_containers(mos)
3585 class DerivativeAccumulator(object):
3586 r"""Proxy of C++ IMP::DerivativeAccumulator class."""
3588 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3589 __repr__ = _swig_repr
3591 def __init__(self, *args):
3593 __init__(DerivativeAccumulator self, DerivativeAccumulator arg2) -> DerivativeAccumulator
3594 __init__(DerivativeAccumulator self, double weight=1.0) -> DerivativeAccumulator
3595 __init__(DerivativeAccumulator self, DerivativeAccumulator copy, double weight) -> DerivativeAccumulator
3597 _IMP_kernel.DerivativeAccumulator_swiginit(self, _IMP_kernel.new_DerivativeAccumulator(*args))
3599 def __call__(self, value):
3600 r"""__call__(DerivativeAccumulator self, double const value) -> double"""
3601 return _IMP_kernel.DerivativeAccumulator___call__(self, value)
3603 def get_weight(self):
3604 r"""get_weight(DerivativeAccumulator self) -> double"""
3605 return _IMP_kernel.DerivativeAccumulator_get_weight(self)
3607 def show(self, *args):
3608 r"""show(DerivativeAccumulator self, _ostream out=std::cout)"""
3609 return _IMP_kernel.DerivativeAccumulator_show(self, *args)
3610 __swig_destroy__ = _IMP_kernel.delete_DerivativeAccumulator
3613 _IMP_kernel.DerivativeAccumulator_swigregister(DerivativeAccumulator)
3614 class EvaluationState(object):
3615 r"""Proxy of C++ IMP::EvaluationState class."""
3617 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3618 score = property(_IMP_kernel.EvaluationState_score_get, _IMP_kernel.EvaluationState_score_set, doc=
r"""score : double""")
3619 good = property(_IMP_kernel.EvaluationState_good_get, _IMP_kernel.EvaluationState_good_set, doc=
r"""good : bool""")
3621 def __init__(self, *args):
3623 __init__(EvaluationState self, double oscore, bool ogood) -> EvaluationState
3624 __init__(EvaluationState self) -> EvaluationState
3626 _IMP_kernel.EvaluationState_swiginit(self, _IMP_kernel.new_EvaluationState(*args))
3628 def show(self, *args):
3629 r"""show(EvaluationState self, _ostream out=std::cout)"""
3630 return _IMP_kernel.EvaluationState_show(self, *args)
3633 r"""__str__(EvaluationState self) -> std::string"""
3634 return _IMP_kernel.EvaluationState___str__(self)
3637 r"""__repr__(EvaluationState self) -> std::string"""
3638 return _IMP_kernel.EvaluationState___repr__(self)
3639 __swig_destroy__ = _IMP_kernel.delete_EvaluationState
3642 _IMP_kernel.EvaluationState_swigregister(EvaluationState)
3643 class ScoreAccumulator(_Value):
3644 r"""Proxy of C++ IMP::ScoreAccumulator class."""
3646 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3648 def __init__(self, *args):
3650 __init__(ScoreAccumulator self, ScoreAccumulator arg2) -> ScoreAccumulator
3651 __init__(ScoreAccumulator self) -> ScoreAccumulator
3652 __init__(ScoreAccumulator self, ScoreAccumulator o, Restraint r) -> ScoreAccumulator
3653 __init__(ScoreAccumulator self, ScoreAccumulator o, double weight, double local_max) -> ScoreAccumulator
3655 _IMP_kernel.ScoreAccumulator_swiginit(self, _IMP_kernel.new_ScoreAccumulator(*args))
3657 def add_score(self, score):
3658 r"""add_score(ScoreAccumulator self, double score)"""
3659 return _IMP_kernel.ScoreAccumulator_add_score(self, score)
3661 def get_abort_evaluation(self):
3662 r"""get_abort_evaluation(ScoreAccumulator self) -> bool"""
3663 return _IMP_kernel.ScoreAccumulator_get_abort_evaluation(self)
3665 def get_is_evaluate_if_below(self):
3666 r"""get_is_evaluate_if_below(ScoreAccumulator self) -> bool"""
3667 return _IMP_kernel.ScoreAccumulator_get_is_evaluate_if_below(self)
3669 def get_is_evaluate_if_good(self):
3670 r"""get_is_evaluate_if_good(ScoreAccumulator self) -> bool"""
3671 return _IMP_kernel.ScoreAccumulator_get_is_evaluate_if_good(self)
3673 def get_maximum(self):
3674 r"""get_maximum(ScoreAccumulator self) -> double"""
3675 return _IMP_kernel.ScoreAccumulator_get_maximum(self)
3677 def get_derivative_accumulator(self):
3678 r"""get_derivative_accumulator(ScoreAccumulator self) -> DerivativeAccumulator"""
3679 return _IMP_kernel.ScoreAccumulator_get_derivative_accumulator(self)
3681 def show(self, *args):
3682 r"""show(ScoreAccumulator self, _ostream out=std::cout)"""
3683 return _IMP_kernel.ScoreAccumulator_show(self, *args)
3686 r"""__str__(ScoreAccumulator self) -> std::string"""
3687 return _IMP_kernel.ScoreAccumulator___str__(self)
3690 r"""__repr__(ScoreAccumulator self) -> std::string"""
3691 return _IMP_kernel.ScoreAccumulator___repr__(self)
3692 __swig_destroy__ = _IMP_kernel.delete_ScoreAccumulator
3695 _IMP_kernel.ScoreAccumulator_swigregister(ScoreAccumulator)
3696 class ScoreState(ModelObject):
3697 r"""Proxy of C++ IMP::ScoreState class."""
3699 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3701 def set_can_skip(self, can_skip):
3702 r"""set_can_skip(ScoreState self, bool can_skip)"""
3703 return _IMP_kernel.ScoreState_set_can_skip(self, can_skip)
3705 def __init__(self, *args):
3707 __init__(ScoreState self, Model m, std::string name) -> ScoreState
3708 __init__(ScoreState self) -> ScoreState
3710 if self.__class__ == ScoreState:
3714 _IMP_kernel.ScoreState_swiginit(self, _IMP_kernel.new_ScoreState(_self, *args))
3716 if self.__class__ != ScoreState:
3717 _director_objects.register(self)
3722 def before_evaluate(self):
3723 r"""before_evaluate(ScoreState self)"""
3724 return _IMP_kernel.ScoreState_before_evaluate(self)
3726 def after_evaluate(self, accpt):
3727 r"""after_evaluate(ScoreState self, DerivativeAccumulator accpt)"""
3728 return _IMP_kernel.ScoreState_after_evaluate(self, accpt)
3730 def get_can_skip(self):
3731 r"""get_can_skip(ScoreState self) -> bool"""
3732 return _IMP_kernel.ScoreState_get_can_skip(self)
3734 def get_has_update_order(self):
3735 r"""get_has_update_order(ScoreState self) -> bool"""
3736 return _IMP_kernel.ScoreState_get_has_update_order(self)
3739 r"""get_update_order(ScoreState self) -> unsigned int"""
3740 return _IMP_kernel.ScoreState_get_update_order(self)
3742 def handle_set_has_required_score_states(self, tf):
3743 r"""handle_set_has_required_score_states(ScoreState self, bool tf)"""
3744 return _IMP_kernel.ScoreState_handle_set_has_required_score_states(self, tf)
3746 def do_before_evaluate(self):
3747 r"""do_before_evaluate(ScoreState self)"""
3748 return _IMP_kernel.ScoreState_do_before_evaluate(self)
3750 def do_after_evaluate(self, accpt):
3751 r"""do_after_evaluate(ScoreState self, DerivativeAccumulator accpt)"""
3752 return _IMP_kernel.ScoreState_do_after_evaluate(self, accpt)
3753 __swig_destroy__ = _IMP_kernel.delete_ScoreState
3756 r"""__str__(ScoreState self) -> std::string"""
3757 return _IMP_kernel.ScoreState___str__(self)
3760 r"""__repr__(ScoreState self) -> std::string"""
3761 return _IMP_kernel.ScoreState___repr__(self)
3765 return _object_cast_to_ScoreState(o)
3768 def get_type_name(self):
3769 return self.__class__.__name__
3770 def do_show(self, out):
3772 def get_version_info(self):
3774 return VersionInfo(self.__module__,
3781 return _object_cast_to_ScoreState(o)
3783 def __disown__(self):
3785 _IMP_kernel.disown_ScoreState(self)
3786 return weakref.proxy(self)
3788 def do_destroy(self):
3789 r"""do_destroy(ScoreState self)"""
3790 return _IMP_kernel.ScoreState_do_destroy(self)
3792 def do_get_inputs(self):
3793 r"""do_get_inputs(ScoreState self) -> IMP::ModelObjectsTemp"""
3794 return _IMP_kernel.ScoreState_do_get_inputs(self)
3796 def do_get_outputs(self):
3797 r"""do_get_outputs(ScoreState self) -> IMP::ModelObjectsTemp"""
3798 return _IMP_kernel.ScoreState_do_get_outputs(self)
3800 def do_get_interactions(self):
3801 r"""do_get_interactions(ScoreState self) -> IMP::ModelObjectsTemps"""
3802 return _IMP_kernel.ScoreState_do_get_interactions(self)
3805 _IMP_kernel.ScoreState_swigregister(ScoreState)
3808 r"""get_update_order(IMP::ScoreStatesTemp input) -> IMP::ScoreStatesTemp"""
3809 return _IMP_kernel.get_update_order(input)
3810 class Constraint(ScoreState):
3811 r"""Proxy of C++ IMP::Constraint class."""
3813 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3815 def __init__(self, *args):
3817 __init__(Constraint self, Model m, std::string name="Constraint %1%") -> Constraint
3818 __init__(Constraint self) -> Constraint
3820 if self.__class__ == Constraint:
3824 _IMP_kernel.Constraint_swiginit(self, _IMP_kernel.new_Constraint(_self, *args))
3826 if self.__class__ != Constraint:
3827 _director_objects.register(self)
3832 def do_update_attributes(self):
3833 r"""do_update_attributes(Constraint self)"""
3834 return _IMP_kernel.Constraint_do_update_attributes(self)
3836 def do_update_derivatives(self, da):
3837 r"""do_update_derivatives(Constraint self, DerivativeAccumulator da)"""
3838 return _IMP_kernel.Constraint_do_update_derivatives(self, da)
3840 def do_before_evaluate(self):
3841 r"""do_before_evaluate(Constraint self)"""
3842 return _IMP_kernel.Constraint_do_before_evaluate(self)
3844 def do_after_evaluate(self, da):
3845 r"""do_after_evaluate(Constraint self, DerivativeAccumulator da)"""
3846 return _IMP_kernel.Constraint_do_after_evaluate(self, da)
3847 __swig_destroy__ = _IMP_kernel.delete_Constraint
3850 r"""__str__(Constraint self) -> std::string"""
3851 return _IMP_kernel.Constraint___str__(self)
3854 r"""__repr__(Constraint self) -> std::string"""
3855 return _IMP_kernel.Constraint___repr__(self)
3859 return _object_cast_to_Constraint(o)
3862 def get_type_name(self):
3863 return self.__class__.__name__
3864 def do_show(self, out):
3866 def get_version_info(self):
3868 return VersionInfo(self.__module__,
3875 return _object_cast_to_Constraint(o)
3877 def __disown__(self):
3879 _IMP_kernel.disown_Constraint(self)
3880 return weakref.proxy(self)
3882 def do_destroy(self):
3883 r"""do_destroy(Constraint self)"""
3884 return _IMP_kernel.Constraint_do_destroy(self)
3886 def do_get_inputs(self):
3887 r"""do_get_inputs(Constraint self) -> IMP::ModelObjectsTemp"""
3888 return _IMP_kernel.Constraint_do_get_inputs(self)
3890 def do_get_outputs(self):
3891 r"""do_get_outputs(Constraint self) -> IMP::ModelObjectsTemp"""
3892 return _IMP_kernel.Constraint_do_get_outputs(self)
3894 def do_get_interactions(self):
3895 r"""do_get_interactions(Constraint self) -> IMP::ModelObjectsTemps"""
3896 return _IMP_kernel.Constraint_do_get_interactions(self)
3899 _IMP_kernel.Constraint_swigregister(Constraint)
3900 class Container(ModelObject):
3901 r"""Proxy of C++ IMP::Container class."""
3903 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
3905 def __init__(self, *args):
3907 __init__(Container self, Model m, std::string name="Container %1%") -> Container
3908 __init__(Container self) -> Container
3910 if self.__class__ == Container:
3914 _IMP_kernel.Container_swiginit(self, _IMP_kernel.new_Container(_self, *args))
3916 if self.__class__ != Container:
3917 _director_objects.register(self)
3922 def do_get_contents_hash(self):
3923 r"""do_get_contents_hash(Container self) -> std::size_t"""
3924 return _IMP_kernel.Container_do_get_contents_hash(self)
3926 def get_all_possible_indexes(self):
3927 r"""get_all_possible_indexes(Container self) -> IMP::ParticleIndexes"""
3928 return _IMP_kernel.Container_get_all_possible_indexes(self)
3930 def get_contents_hash(self):
3931 r"""get_contents_hash(Container self) -> std::size_t"""
3932 return _IMP_kernel.Container_get_contents_hash(self)
3934 def do_get_outputs(self):
3935 r"""do_get_outputs(Container self) -> IMP::ModelObjectsTemp"""
3936 return _IMP_kernel.Container_do_get_outputs(self)
3938 def get_is_decomposable(self):
3939 r"""get_is_decomposable(Container self) -> bool"""
3940 return _IMP_kernel.Container_get_is_decomposable(self)
3942 def validate_readable(self):
3943 r"""validate_readable(Container self)"""
3944 return _IMP_kernel.Container_validate_readable(self)
3946 def validate_writable(self):
3947 r"""validate_writable(Container self)"""
3948 return _IMP_kernel.Container_validate_writable(self)
3950 def set_is_readable(self, tf):
3951 r"""set_is_readable(Container self, bool tf)"""
3952 return _IMP_kernel.Container_set_is_readable(self, tf)
3954 def set_is_writable(self, tf):
3955 r"""set_is_writable(Container self, bool tf)"""
3956 return _IMP_kernel.Container_set_is_writable(self, tf)
3957 __swig_destroy__ = _IMP_kernel.delete_Container
3960 r"""__str__(Container self) -> std::string"""
3961 return _IMP_kernel.Container___str__(self)
3964 r"""__repr__(Container self) -> std::string"""
3965 return _IMP_kernel.Container___repr__(self)
3969 return _object_cast_to_Container(o)
3972 def get_type_name(self):
3973 return self.__class__.__name__
3974 def do_show(self, out):
3976 def get_version_info(self):
3978 return VersionInfo(self.__module__,
3985 return _object_cast_to_Container(o)
3987 def __disown__(self):
3989 _IMP_kernel.disown_Container(self)
3990 return weakref.proxy(self)
3992 def do_destroy(self):
3993 r"""do_destroy(Container self)"""
3994 return _IMP_kernel.Container_do_destroy(self)
3996 def handle_set_has_required_score_states(self, arg0):
3997 r"""handle_set_has_required_score_states(Container self, bool arg0)"""
3998 return _IMP_kernel.Container_handle_set_has_required_score_states(self, arg0)
4000 def do_get_inputs(self):
4001 r"""do_get_inputs(Container self) -> IMP::ModelObjectsTemp"""
4002 return _IMP_kernel.Container_do_get_inputs(self)
4004 def do_get_interactions(self):
4005 r"""do_get_interactions(Container self) -> IMP::ModelObjectsTemps"""
4006 return _IMP_kernel.Container_do_get_interactions(self)
4009 _IMP_kernel.Container_swigregister(Container)
4010 class RestraintInfo(Object):
4011 r"""Proxy of C++ IMP::RestraintInfo class."""
4013 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4015 def __init__(self, *args):
4016 r"""__init__(RestraintInfo self, std::string name="RestraintInfo %1%") -> RestraintInfo"""
4017 _IMP_kernel.RestraintInfo_swiginit(self, _IMP_kernel.new_RestraintInfo(*args))
4020 r"""clear(RestraintInfo self)"""
4021 return _IMP_kernel.RestraintInfo_clear(self)
4023 def add_int(self, key, value):
4024 r"""add_int(RestraintInfo self, std::string key, int value)"""
4025 return _IMP_kernel.RestraintInfo_add_int(self, key, value)
4027 def get_number_of_int(self):
4028 r"""get_number_of_int(RestraintInfo self) -> unsigned int"""
4029 return _IMP_kernel.RestraintInfo_get_number_of_int(self)
4031 def get_int_key(self, i):
4032 r"""get_int_key(RestraintInfo self, unsigned int i) -> std::string"""
4033 return _IMP_kernel.RestraintInfo_get_int_key(self, i)
4035 def get_int_value(self, i):
4036 r"""get_int_value(RestraintInfo self, unsigned int i) -> int"""
4037 return _IMP_kernel.RestraintInfo_get_int_value(self, i)
4039 def add_float(self, key, value):
4040 r"""add_float(RestraintInfo self, std::string key, double value)"""
4041 return _IMP_kernel.RestraintInfo_add_float(self, key, value)
4043 def get_number_of_float(self):
4044 r"""get_number_of_float(RestraintInfo self) -> unsigned int"""
4045 return _IMP_kernel.RestraintInfo_get_number_of_float(self)
4047 def get_float_key(self, i):
4048 r"""get_float_key(RestraintInfo self, unsigned int i) -> std::string"""
4049 return _IMP_kernel.RestraintInfo_get_float_key(self, i)
4051 def get_float_value(self, i):
4052 r"""get_float_value(RestraintInfo self, unsigned int i) -> double"""
4053 return _IMP_kernel.RestraintInfo_get_float_value(self, i)
4055 def add_string(self, key, value):
4056 r"""add_string(RestraintInfo self, std::string key, std::string value)"""
4057 return _IMP_kernel.RestraintInfo_add_string(self, key, value)
4059 def get_number_of_string(self):
4060 r"""get_number_of_string(RestraintInfo self) -> unsigned int"""
4061 return _IMP_kernel.RestraintInfo_get_number_of_string(self)
4063 def get_string_key(self, i):
4064 r"""get_string_key(RestraintInfo self, unsigned int i) -> std::string"""
4065 return _IMP_kernel.RestraintInfo_get_string_key(self, i)
4067 def get_string_value(self, i):
4068 r"""get_string_value(RestraintInfo self, unsigned int i) -> std::string"""
4069 return _IMP_kernel.RestraintInfo_get_string_value(self, i)
4071 def add_filename(self, key, value):
4072 r"""add_filename(RestraintInfo self, std::string key, std::string value)"""
4073 return _IMP_kernel.RestraintInfo_add_filename(self, key, value)
4075 def get_number_of_filename(self):
4076 r"""get_number_of_filename(RestraintInfo self) -> unsigned int"""
4077 return _IMP_kernel.RestraintInfo_get_number_of_filename(self)
4079 def get_filename_key(self, i):
4080 r"""get_filename_key(RestraintInfo self, unsigned int i) -> std::string"""
4081 return _IMP_kernel.RestraintInfo_get_filename_key(self, i)
4083 def get_filename_value(self, i):
4084 r"""get_filename_value(RestraintInfo self, unsigned int i) -> std::string"""
4085 return _IMP_kernel.RestraintInfo_get_filename_value(self, i)
4087 def add_floats(self, key, value):
4088 r"""add_floats(RestraintInfo self, std::string key, IMP::Floats value)"""
4089 return _IMP_kernel.RestraintInfo_add_floats(self, key, value)
4091 def get_number_of_floats(self):
4092 r"""get_number_of_floats(RestraintInfo self) -> unsigned int"""
4093 return _IMP_kernel.RestraintInfo_get_number_of_floats(self)
4095 def get_floats_key(self, i):
4096 r"""get_floats_key(RestraintInfo self, unsigned int i) -> std::string"""
4097 return _IMP_kernel.RestraintInfo_get_floats_key(self, i)
4099 def get_floats_value(self, i):
4100 r"""get_floats_value(RestraintInfo self, unsigned int i) -> IMP::Floats"""
4101 return _IMP_kernel.RestraintInfo_get_floats_value(self, i)
4103 def add_ints(self, key, value):
4104 r"""add_ints(RestraintInfo self, std::string key, IMP::Ints value)"""
4105 return _IMP_kernel.RestraintInfo_add_ints(self, key, value)
4107 def get_number_of_ints(self):
4108 r"""get_number_of_ints(RestraintInfo self) -> unsigned int"""
4109 return _IMP_kernel.RestraintInfo_get_number_of_ints(self)
4111 def get_ints_key(self, i):
4112 r"""get_ints_key(RestraintInfo self, unsigned int i) -> std::string"""
4113 return _IMP_kernel.RestraintInfo_get_ints_key(self, i)
4115 def get_ints_value(self, i):
4116 r"""get_ints_value(RestraintInfo self, unsigned int i) -> IMP::Ints"""
4117 return _IMP_kernel.RestraintInfo_get_ints_value(self, i)
4119 def add_strings(self, key, value):
4120 r"""add_strings(RestraintInfo self, std::string key, IMP::Strings value)"""
4121 return _IMP_kernel.RestraintInfo_add_strings(self, key, value)
4123 def get_number_of_strings(self):
4124 r"""get_number_of_strings(RestraintInfo self) -> unsigned int"""
4125 return _IMP_kernel.RestraintInfo_get_number_of_strings(self)
4127 def get_strings_key(self, i):
4128 r"""get_strings_key(RestraintInfo self, unsigned int i) -> std::string"""
4129 return _IMP_kernel.RestraintInfo_get_strings_key(self, i)
4131 def get_strings_value(self, i):
4132 r"""get_strings_value(RestraintInfo self, unsigned int i) -> IMP::Strings"""
4133 return _IMP_kernel.RestraintInfo_get_strings_value(self, i)
4135 def add_filenames(self, key, value):
4136 r"""add_filenames(RestraintInfo self, std::string key, IMP::Strings value)"""
4137 return _IMP_kernel.RestraintInfo_add_filenames(self, key, value)
4139 def get_number_of_filenames(self):
4140 r"""get_number_of_filenames(RestraintInfo self) -> unsigned int"""
4141 return _IMP_kernel.RestraintInfo_get_number_of_filenames(self)
4143 def get_filenames_key(self, i):
4144 r"""get_filenames_key(RestraintInfo self, unsigned int i) -> std::string"""
4145 return _IMP_kernel.RestraintInfo_get_filenames_key(self, i)
4147 def get_filenames_value(self, i):
4148 r"""get_filenames_value(RestraintInfo self, unsigned int i) -> IMP::Strings"""
4149 return _IMP_kernel.RestraintInfo_get_filenames_value(self, i)
4151 def add_particle_indexes(self, key, value):
4152 r"""add_particle_indexes(RestraintInfo self, std::string key, IMP::ParticleIndexes value)"""
4153 return _IMP_kernel.RestraintInfo_add_particle_indexes(self, key, value)
4155 def get_number_of_particle_indexes(self):
4156 r"""get_number_of_particle_indexes(RestraintInfo self) -> unsigned int"""
4157 return _IMP_kernel.RestraintInfo_get_number_of_particle_indexes(self)
4159 def get_particle_indexes_key(self, i):
4160 r"""get_particle_indexes_key(RestraintInfo self, unsigned int i) -> std::string"""
4161 return _IMP_kernel.RestraintInfo_get_particle_indexes_key(self, i)
4163 def get_particle_indexes_value(self, i):
4164 r"""get_particle_indexes_value(RestraintInfo self, unsigned int i) -> IMP::ParticleIndexes"""
4165 return _IMP_kernel.RestraintInfo_get_particle_indexes_value(self, i)
4167 def get_version_info(self):
4168 r"""get_version_info(RestraintInfo self) -> VersionInfo"""
4169 return _IMP_kernel.RestraintInfo_get_version_info(self)
4170 __swig_destroy__ = _IMP_kernel.delete_RestraintInfo
4173 r"""__str__(RestraintInfo self) -> std::string"""
4174 return _IMP_kernel.RestraintInfo___str__(self)
4177 r"""__repr__(RestraintInfo self) -> std::string"""
4178 return _IMP_kernel.RestraintInfo___repr__(self)
4182 return _object_cast_to_RestraintInfo(o)
4186 _IMP_kernel.RestraintInfo_swigregister(RestraintInfo)
4187 class Restraint(ModelObject):
4188 r"""Proxy of C++ IMP::Restraint class."""
4190 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4192 def __init__(self, *args):
4194 __init__(Restraint self, Model m, std::string name) -> Restraint
4195 __init__(Restraint self) -> Restraint
4197 if self.__class__ == Restraint:
4201 _IMP_kernel.Restraint_swiginit(self, _IMP_kernel.new_Restraint(_self, *args))
4203 if self.__class__ != Restraint:
4204 _director_objects.register(self)
4209 def get_score(self):
4210 r"""get_score(Restraint self) -> double"""
4211 return _IMP_kernel.Restraint_get_score(self)
4213 def evaluate(self, calc_derivs):
4214 r"""evaluate(Restraint self, bool calc_derivs) -> double"""
4215 return _IMP_kernel.Restraint_evaluate(self, calc_derivs)
4217 def evaluate_moved(self, calc_derivs, moved_pis, reset_pis):
4218 r"""evaluate_moved(Restraint self, bool calc_derivs, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis) -> double"""
4219 return _IMP_kernel.Restraint_evaluate_moved(self, calc_derivs, moved_pis, reset_pis)
4221 def evaluate_moved_if_below(self, calc_derivatives, moved_pis, reset_pis, max):
4222 r"""evaluate_moved_if_below(Restraint self, bool calc_derivatives, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis, double max) -> double"""
4223 return _IMP_kernel.Restraint_evaluate_moved_if_below(self, calc_derivatives, moved_pis, reset_pis, max)
4225 def evaluate_moved_if_good(self, calc_derivatives, moved_pis, reset_pis):
4226 r"""evaluate_moved_if_good(Restraint self, bool calc_derivatives, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis) -> double"""
4227 return _IMP_kernel.Restraint_evaluate_moved_if_good(self, calc_derivatives, moved_pis, reset_pis)
4229 def evaluate_if_good(self, calc_derivatives):
4230 r"""evaluate_if_good(Restraint self, bool calc_derivatives) -> double"""
4231 return _IMP_kernel.Restraint_evaluate_if_good(self, calc_derivatives)
4233 def evaluate_if_below(self, calc_derivatives, max):
4234 r"""evaluate_if_below(Restraint self, bool calc_derivatives, double max) -> double"""
4235 return _IMP_kernel.Restraint_evaluate_if_below(self, calc_derivatives, max)
4237 def unprotected_evaluate(self, da):
4238 r"""unprotected_evaluate(Restraint self, DerivativeAccumulator da) -> double"""
4239 return _IMP_kernel.Restraint_unprotected_evaluate(self, da)
4241 def unprotected_evaluate_moved(self, da, moved_pis, reset_pis):
4242 r"""unprotected_evaluate_moved(Restraint self, DerivativeAccumulator da, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis) -> double"""
4243 return _IMP_kernel.Restraint_unprotected_evaluate_moved(self, da, moved_pis, reset_pis)
4245 def unprotected_evaluate_if_good(self, da, max):
4246 r"""unprotected_evaluate_if_good(Restraint self, DerivativeAccumulator da, double max) -> double"""
4247 return _IMP_kernel.Restraint_unprotected_evaluate_if_good(self, da, max)
4249 def unprotected_evaluate_if_below(self, da, max):
4250 r"""unprotected_evaluate_if_below(Restraint self, DerivativeAccumulator da, double max) -> double"""
4251 return _IMP_kernel.Restraint_unprotected_evaluate_if_below(self, da, max)
4253 def unprotected_evaluate_moved_if_below(self, da, moved_pis, reset_pis, max):
4254 r"""unprotected_evaluate_moved_if_below(Restraint self, DerivativeAccumulator da, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis, double max) -> double"""
4255 return _IMP_kernel.Restraint_unprotected_evaluate_moved_if_below(self, da, moved_pis, reset_pis, max)
4257 def unprotected_evaluate_moved_if_good(self, da, moved_pis, reset_pis, max):
4258 r"""unprotected_evaluate_moved_if_good(Restraint self, DerivativeAccumulator da, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis, double max) -> double"""
4259 return _IMP_kernel.Restraint_unprotected_evaluate_moved_if_good(self, da, moved_pis, reset_pis, max)
4261 def get_static_info(self):
4262 r"""get_static_info(Restraint self) -> RestraintInfo"""
4263 return _IMP_kernel.Restraint_get_static_info(self)
4265 def get_dynamic_info(self):
4266 r"""get_dynamic_info(Restraint self) -> RestraintInfo"""
4267 return _IMP_kernel.Restraint_get_dynamic_info(self)
4269 def add_score_and_derivatives(self, sa):
4270 r"""add_score_and_derivatives(Restraint self, ScoreAccumulator sa)"""
4271 return _IMP_kernel.Restraint_add_score_and_derivatives(self, sa)
4273 def add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis):
4274 r"""add_score_and_derivatives_moved(Restraint self, ScoreAccumulator sa, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
4275 return _IMP_kernel.Restraint_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis)
4278 r"""create_decomposition(Restraint self) -> Restraint"""
4279 return _IMP_kernel.Restraint_create_decomposition(self)
4281 def create_current_decomposition(self):
4282 r"""create_current_decomposition(Restraint self) -> Restraint"""
4283 return _IMP_kernel.Restraint_create_current_decomposition(self)
4285 def set_weight(self, weight):
4286 r"""set_weight(Restraint self, IMP::Float weight)"""
4287 return _IMP_kernel.Restraint_set_weight(self, weight)
4289 def get_weight(self):
4290 r"""get_weight(Restraint self) -> IMP::Float"""
4291 return _IMP_kernel.Restraint_get_weight(self)
4293 def get_maximum_score(self):
4294 r"""get_maximum_score(Restraint self) -> double"""
4295 return _IMP_kernel.Restraint_get_maximum_score(self)
4297 def set_maximum_score(self, s):
4298 r"""set_maximum_score(Restraint self, double s)"""
4299 return _IMP_kernel.Restraint_set_maximum_score(self, s)
4302 r"""create_scoring_function(Restraint self, double weight=1.0, double max=NO_MAX) -> ScoringFunction"""
4303 return _IMP_kernel.Restraint_create_scoring_function(self, *args)
4305 def set_last_score(self, s):
4306 r"""set_last_score(Restraint self, double s)"""
4307 return _IMP_kernel.Restraint_set_last_score(self, s)
4309 def set_last_last_score(self, s):
4310 r"""set_last_last_score(Restraint self, double s)"""
4311 return _IMP_kernel.Restraint_set_last_last_score(self, s)
4313 def get_last_score(self):
4314 r"""get_last_score(Restraint self) -> double"""
4315 return _IMP_kernel.Restraint_get_last_score(self)
4317 def get_last_last_score(self):
4318 r"""get_last_last_score(Restraint self) -> double"""
4319 return _IMP_kernel.Restraint_get_last_last_score(self)
4321 def get_is_aggregate(self):
4322 r"""get_is_aggregate(Restraint self) -> bool"""
4323 return _IMP_kernel.Restraint_get_is_aggregate(self)
4325 def get_was_good(self):
4326 r"""get_was_good(Restraint self) -> bool"""
4327 return _IMP_kernel.Restraint_get_was_good(self)
4328 __swig_destroy__ = _IMP_kernel.delete_Restraint
4330 def do_create_decomposition(self):
4331 r"""do_create_decomposition(Restraint self) -> IMP::Restraints"""
4332 return _IMP_kernel.Restraint_do_create_decomposition(self)
4334 def do_create_current_decomposition(self):
4335 r"""do_create_current_decomposition(Restraint self) -> IMP::Restraints"""
4336 return _IMP_kernel.Restraint_do_create_current_decomposition(self)
4338 def do_add_score_and_derivatives(self, sa):
4339 r"""do_add_score_and_derivatives(Restraint self, ScoreAccumulator sa)"""
4340 return _IMP_kernel.Restraint_do_add_score_and_derivatives(self, sa)
4342 def do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis):
4343 r"""do_add_score_and_derivatives_moved(Restraint self, ScoreAccumulator sa, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
4344 return _IMP_kernel.Restraint_do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis)
4346 def do_get_outputs(self):
4347 r"""do_get_outputs(Restraint self) -> IMP::ModelObjectsTemp"""
4348 return _IMP_kernel.Restraint_do_get_outputs(self)
4349 is_aggregate_ = property(_IMP_kernel.Restraint_is_aggregate__get, _IMP_kernel.Restraint_is_aggregate__set, doc=
r"""is_aggregate_ : bool""")
4352 r"""__str__(Restraint self) -> std::string"""
4353 return _IMP_kernel.Restraint___str__(self)
4356 r"""__repr__(Restraint self) -> std::string"""
4357 return _IMP_kernel.Restraint___repr__(self)
4361 return _object_cast_to_Restraint(o)
4364 def get_type_name(self):
4365 return self.__class__.__name__
4366 def do_show(self, out):
4368 def get_version_info(self):
4370 return VersionInfo(self.__module__,
4377 return _object_cast_to_Restraint(o)
4379 def __disown__(self):
4381 _IMP_kernel.disown_Restraint(self)
4382 return weakref.proxy(self)
4384 def do_destroy(self):
4385 r"""do_destroy(Restraint self)"""
4386 return _IMP_kernel.Restraint_do_destroy(self)
4388 def handle_set_has_required_score_states(self, arg0):
4389 r"""handle_set_has_required_score_states(Restraint self, bool arg0)"""
4390 return _IMP_kernel.Restraint_handle_set_has_required_score_states(self, arg0)
4392 def do_get_inputs(self):
4393 r"""do_get_inputs(Restraint self) -> IMP::ModelObjectsTemp"""
4394 return _IMP_kernel.Restraint_do_get_inputs(self)
4396 def do_get_interactions(self):
4397 r"""do_get_interactions(Restraint self) -> IMP::ModelObjectsTemps"""
4398 return _IMP_kernel.Restraint_do_get_interactions(self)
4401 _IMP_kernel.Restraint_swigregister(Restraint)
4402 class _RestraintsAdaptor(_InputAdaptor):
4403 r"""Proxy of C++ IMP::RestraintsAdaptor class."""
4405 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4406 __repr__ = _swig_repr
4408 def __init__(self, *args):
4410 __init__(_RestraintsAdaptor self) -> _RestraintsAdaptor
4411 __init__(_RestraintsAdaptor self, IMP::Restraints const & sf) -> _RestraintsAdaptor
4412 __init__(_RestraintsAdaptor self, IMP::RestraintsTemp const & sf) -> _RestraintsAdaptor
4413 __init__(_RestraintsAdaptor self, Restraint sf) -> _RestraintsAdaptor
4415 _IMP_kernel._RestraintsAdaptor_swiginit(self, _IMP_kernel.new__RestraintsAdaptor(*args))
4416 __swig_destroy__ = _IMP_kernel.delete__RestraintsAdaptor
4419 _IMP_kernel._RestraintsAdaptor_swigregister(_RestraintsAdaptor)
4420 class RestraintSet(Restraint):
4421 r"""Proxy of C++ IMP::RestraintSet class."""
4423 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4425 def __init__(self, *args):
4427 __init__(RestraintSet self, Model m, double weight, std::string const & name="RestraintSet %1%") -> RestraintSet
4428 __init__(RestraintSet self, Model m, std::string const & name="RestraintSet %1%") -> RestraintSet
4429 __init__(RestraintSet self, IMP::RestraintsTemp const & rs, double weight, std::string const & name="RestraintSet %1%") -> RestraintSet
4430 __init__(RestraintSet self) -> RestraintSet
4432 if self.__class__ == RestraintSet:
4436 _IMP_kernel.RestraintSet_swiginit(self, _IMP_kernel.new_RestraintSet(_self, *args))
4438 if self.__class__ != RestraintSet:
4439 _director_objects.register(self)
4444 def unprotected_evaluate(self, da):
4445 r"""unprotected_evaluate(RestraintSet self, DerivativeAccumulator da) -> double"""
4446 return _IMP_kernel.RestraintSet_unprotected_evaluate(self, da)
4448 def get_type_name(self):
4449 r"""get_type_name(RestraintSet self) -> std::string"""
4450 return _IMP_kernel.RestraintSet_get_type_name(self)
4452 def get_version_info(self):
4453 r"""get_version_info(RestraintSet self) -> VersionInfo"""
4454 return _IMP_kernel.RestraintSet_get_version_info(self)
4455 __swig_destroy__ = _IMP_kernel.delete_RestraintSet
4456 def __get_restraints(self):
return _list_util.VarList(getdimfunc=self.get_number_of_restraints, getfunc=self.get_restraint, erasefunc=self.erase_restraint, appendfunc=self.add_restraint, extendfunc=self.add_restraints, clearfunc=self.clear_restraints, indexfunc=self._python_index_restraint)
4457 def __set_restraints(self, obj): _list_util.set_varlist(self.restraints, obj)
4458 def __del_restraints(self): _list_util.del_varlist(self.restraints)
4459 restraints = property(__get_restraints, __set_restraints, __del_restraints, doc=
"List of ##ucnames")
4461 def remove_restraint(self, d):
4462 r"""remove_restraint(RestraintSet self, Restraint d)"""
4463 return _IMP_kernel.RestraintSet_remove_restraint(self, d)
4465 def _python_index_restraint(self, d, start, stop):
4466 r"""_python_index_restraint(RestraintSet self, Restraint d, unsigned int start, unsigned int stop) -> unsigned int"""
4467 return _IMP_kernel.RestraintSet__python_index_restraint(self, d, start, stop)
4469 def remove_restraints(self, d):
4470 r"""remove_restraints(RestraintSet self, IMP::Restraints const & d)"""
4471 return _IMP_kernel.RestraintSet_remove_restraints(self, d)
4473 def set_restraints(self, ps):
4474 r"""set_restraints(RestraintSet self, IMP::Restraints const & ps)"""
4475 return _IMP_kernel.RestraintSet_set_restraints(self, ps)
4477 def set_restraints_order(self, objs):
4478 r"""set_restraints_order(RestraintSet self, IMP::Restraints const & objs)"""
4479 return _IMP_kernel.RestraintSet_set_restraints_order(self, objs)
4482 r"""add_restraint(RestraintSet self, Restraint obj) -> unsigned int"""
4483 return _IMP_kernel.RestraintSet_add_restraint(self, obj)
4486 r"""add_restraints(RestraintSet self, IMP::Restraints const & objs)"""
4487 return _IMP_kernel.RestraintSet_add_restraints(self, objs)
4489 def clear_restraints(self):
4490 r"""clear_restraints(RestraintSet self)"""
4491 return _IMP_kernel.RestraintSet_clear_restraints(self)
4493 def get_number_of_restraints(self):
4494 r"""get_number_of_restraints(RestraintSet self) -> unsigned int"""
4495 return _IMP_kernel.RestraintSet_get_number_of_restraints(self)
4497 def get_has_restraints(self):
4498 r"""get_has_restraints(RestraintSet self) -> bool"""
4499 return _IMP_kernel.RestraintSet_get_has_restraints(self)
4501 def get_restraint(self, i):
4502 r"""get_restraint(RestraintSet self, unsigned int i) -> Restraint"""
4503 return _IMP_kernel.RestraintSet_get_restraint(self, i)
4505 def get_restraints(self):
4506 r"""get_restraints(RestraintSet self) -> IMP::Restraints"""
4507 return _IMP_kernel.RestraintSet_get_restraints(self)
4509 def erase_restraint(self, i):
4510 r"""erase_restraint(RestraintSet self, unsigned int i)"""
4511 return _IMP_kernel.RestraintSet_erase_restraint(self, i)
4513 def reserve_restraints(self, sz):
4514 r"""reserve_restraints(RestraintSet self, unsigned int sz)"""
4515 return _IMP_kernel.RestraintSet_reserve_restraints(self, sz)
4517 def get_non_sets_and_sets(self):
4518 r"""get_non_sets_and_sets(RestraintSet self) -> std::pair< IMP::RestraintsTemp,IMP::RestraintSetsTemp >"""
4519 return _IMP_kernel.RestraintSet_get_non_sets_and_sets(self)
4521 def do_get_inputs(self):
4522 r"""do_get_inputs(RestraintSet self) -> IMP::ModelObjectsTemp"""
4523 return _IMP_kernel.RestraintSet_do_get_inputs(self)
4526 r"""create_scoring_function(RestraintSet self, double weight=1.0, double max=std::numeric_limits< double >::max()) -> ScoringFunction"""
4527 return _IMP_kernel.RestraintSet_create_scoring_function(self, *args)
4529 def get_last_score(self):
4530 r"""get_last_score(RestraintSet self) -> double"""
4531 return _IMP_kernel.RestraintSet_get_last_score(self)
4534 r"""__str__(RestraintSet self) -> std::string"""
4535 return _IMP_kernel.RestraintSet___str__(self)
4538 r"""__repr__(RestraintSet self) -> std::string"""
4539 return _IMP_kernel.RestraintSet___repr__(self)
4543 return _object_cast_to_RestraintSet(o)
4546 def get_type_name(self):
4547 return self.__class__.__name__
4548 def do_show(self, out):
4550 def get_version_info(self):
4552 return VersionInfo(self.__module__,
4559 return _object_cast_to_RestraintSet(o)
4562 def _get_as_binary(self):
4563 r"""_get_as_binary(RestraintSet self) -> PyObject *"""
4564 return _IMP_kernel.RestraintSet__get_as_binary(self)
4566 def _set_from_binary(self, p):
4567 r"""_set_from_binary(RestraintSet self, PyObject * p)"""
4568 return _IMP_kernel.RestraintSet__set_from_binary(self, p)
4570 def __getstate__(self):
4571 p = self._get_as_binary()
4572 if len(self.__dict__) > 1:
4573 d = self.__dict__.copy()
4578 def __setstate__(self, p):
4579 if not hasattr(self,
'this'):
4581 if isinstance(p, tuple):
4583 self.__dict__.update(d)
4584 return self._set_from_binary(p)
4586 def __disown__(self):
4588 _IMP_kernel.disown_RestraintSet(self)
4589 return weakref.proxy(self)
4591 def do_destroy(self):
4592 r"""do_destroy(RestraintSet self)"""
4593 return _IMP_kernel.RestraintSet_do_destroy(self)
4595 def handle_set_has_required_score_states(self, arg0):
4596 r"""handle_set_has_required_score_states(RestraintSet self, bool arg0)"""
4597 return _IMP_kernel.RestraintSet_handle_set_has_required_score_states(self, arg0)
4599 def do_get_outputs(self):
4600 r"""do_get_outputs(RestraintSet self) -> IMP::ModelObjectsTemp"""
4601 return _IMP_kernel.RestraintSet_do_get_outputs(self)
4603 def do_get_interactions(self):
4604 r"""do_get_interactions(RestraintSet self) -> IMP::ModelObjectsTemps"""
4605 return _IMP_kernel.RestraintSet_do_get_interactions(self)
4607 def do_create_decomposition(self):
4608 r"""do_create_decomposition(RestraintSet self) -> IMP::Restraints"""
4609 return _IMP_kernel.RestraintSet_do_create_decomposition(self)
4611 def do_create_current_decomposition(self):
4612 r"""do_create_current_decomposition(RestraintSet self) -> IMP::Restraints"""
4613 return _IMP_kernel.RestraintSet_do_create_current_decomposition(self)
4615 def do_add_score_and_derivatives(self, sa):
4616 r"""do_add_score_and_derivatives(RestraintSet self, ScoreAccumulator sa)"""
4617 return _IMP_kernel.RestraintSet_do_add_score_and_derivatives(self, sa)
4619 def do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis):
4620 r"""do_add_score_and_derivatives_moved(RestraintSet self, ScoreAccumulator sa, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
4621 return _IMP_kernel.RestraintSet_do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis)
4624 _IMP_kernel.RestraintSet_swigregister(RestraintSet)
4626 def get_restraints(rs):
4627 r"""get_restraints(IMP::RestraintsTemp const & rs) -> IMP::RestraintsTemp"""
4628 return _IMP_kernel.get_restraints(rs)
4630 def _check_particle(p, a):
4631 if (
not p.get_is_active()):
4632 raise ValueError(
"Inactive Particle")
4633 if (type(a)() == a):
4634 raise IndexError(
"Cannot use default Index")
4635 if (
not p.has_attribute(a)):
4636 raise IndexError(
"Particle does not have attribute")
4638 class Particle(ModelObject):
4639 r"""Proxy of C++ IMP::Particle class."""
4641 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4643 def get_version_info(self):
4644 r"""get_version_info(Particle self) -> VersionInfo"""
4645 return _IMP_kernel.Particle_get_version_info(self)
4646 __swig_destroy__ = _IMP_kernel.delete_Particle
4648 def __init__(self, *args):
4650 __init__(Particle self, Model m, std::string name) -> Particle
4651 __init__(Particle self, Model m) -> Particle
4652 __init__(Particle self) -> Particle
4654 _IMP_kernel.Particle_swiginit(self, _IMP_kernel.new_Particle(*args))
4656 def get_float_keys(self):
4657 r"""get_float_keys(Particle self) -> IMP::FloatKeys"""
4658 return _IMP_kernel.Particle_get_float_keys(self)
4660 def get_floats_keys(self):
4661 r"""get_floats_keys(Particle self) -> IMP::FloatsKeys"""
4662 return _IMP_kernel.Particle_get_floats_keys(self)
4664 def get_int_keys(self):
4665 r"""get_int_keys(Particle self) -> IMP::IntKeys"""
4666 return _IMP_kernel.Particle_get_int_keys(self)
4668 def get_ints_keys(self):
4669 r"""get_ints_keys(Particle self) -> IMP::IntsKeys"""
4670 return _IMP_kernel.Particle_get_ints_keys(self)
4672 def get_string_keys(self):
4673 r"""get_string_keys(Particle self) -> IMP::StringKeys"""
4674 return _IMP_kernel.Particle_get_string_keys(self)
4676 def get_object_keys(self):
4677 r"""get_object_keys(Particle self) -> IMP::ObjectKeys"""
4678 return _IMP_kernel.Particle_get_object_keys(self)
4680 def add_cache_attribute(self, *args):
4682 add_cache_attribute(Particle self, FloatKey name, IMP::Float value)
4683 add_cache_attribute(Particle self, FloatsKey name, IMP::Floats value)
4684 add_cache_attribute(Particle self, IntKey name, IMP::Int value)
4685 add_cache_attribute(Particle self, IntsKey name, IMP::Ints value)
4686 add_cache_attribute(Particle self, StringKey name, IMP::String value)
4687 add_cache_attribute(Particle self, ObjectKey name, Object value)
4688 add_cache_attribute(Particle self, IMP::WeakObjectKey name, Object value)
4690 return _IMP_kernel.Particle_add_cache_attribute(self, *args)
4692 def get_weak_object_keys(self):
4693 r"""get_weak_object_keys(Particle self) -> IMP::WeakObjectKeys"""
4694 return _IMP_kernel.Particle_get_weak_object_keys(self)
4696 def add_to_derivative(self, key, value, da):
4697 r"""add_to_derivative(Particle self, FloatKey key, IMP::Float value, DerivativeAccumulator da)"""
4698 return _IMP_kernel.Particle_add_to_derivative(self, key, value, da)
4700 def set_is_optimized(self, k, tf):
4701 r"""set_is_optimized(Particle self, FloatKey k, bool tf)"""
4702 return _IMP_kernel.Particle_set_is_optimized(self, k, tf)
4704 def get_is_optimized(self, k):
4705 r"""get_is_optimized(Particle self, FloatKey k) -> bool"""
4706 return _IMP_kernel.Particle_get_is_optimized(self, k)
4708 def get_derivative(self, k):
4709 r"""get_derivative(Particle self, FloatKey k) -> IMP::Float"""
4710 return _IMP_kernel.Particle_get_derivative(self, k)
4712 def add_attribute(self, *args):
4714 add_attribute(Particle self, FloatKey name, IMP::Float initial_value)
4715 add_attribute(Particle self, FloatsKey name, IMP::Floats initial_value)
4716 add_attribute(Particle self, IntKey name, IMP::Int initial_value)
4717 add_attribute(Particle self, IntsKey name, IMP::Ints initial_value)
4718 add_attribute(Particle self, StringKey name, IMP::String initial_value)
4719 add_attribute(Particle self, ObjectKey name, Object initial_value)
4720 add_attribute(Particle self, IMP::WeakObjectKey name, Object initial_value)
4721 add_attribute(Particle self, SparseStringKey name, IMP::String initial_value)
4722 add_attribute(Particle self, SparseIntKey name, IMP::Int initial_value)
4723 add_attribute(Particle self, SparseFloatKey name, IMP::Float initial_value)
4724 add_attribute(Particle self, SparseParticleIndexKey name, ParticleIndex initial_value)
4725 add_attribute(Particle self, FloatKey name, IMP::Float const initial_value, bool optimized)
4726 add_attribute(Particle self, ParticleIndexKey k, Particle v)
4728 return _IMP_kernel.Particle_add_attribute(self, *args)
4730 def has_attribute(self, *args):
4732 has_attribute(Particle self, FloatKey name) -> bool
4733 has_attribute(Particle self, FloatsKey name) -> bool
4734 has_attribute(Particle self, IntKey name) -> bool
4735 has_attribute(Particle self, IntsKey name) -> bool
4736 has_attribute(Particle self, StringKey name) -> bool
4737 has_attribute(Particle self, ObjectKey name) -> bool
4738 has_attribute(Particle self, IMP::WeakObjectKey name) -> bool
4739 has_attribute(Particle self, SparseStringKey name) -> bool
4740 has_attribute(Particle self, SparseIntKey name) -> bool
4741 has_attribute(Particle self, SparseFloatKey name) -> bool
4742 has_attribute(Particle self, SparseParticleIndexKey name) -> bool
4743 has_attribute(Particle self, ParticleIndexKey k) -> bool
4745 return _IMP_kernel.Particle_has_attribute(self, *args)
4747 def set_value(self, *args):
4749 set_value(Particle self, FloatKey name, IMP::Float value)
4750 set_value(Particle self, FloatsKey name, IMP::Floats value)
4751 set_value(Particle self, IntKey name, IMP::Int value)
4752 set_value(Particle self, IntsKey name, IMP::Ints value)
4753 set_value(Particle self, StringKey name, IMP::String value)
4754 set_value(Particle self, ObjectKey name, Object value)
4755 set_value(Particle self, IMP::WeakObjectKey name, Object value)
4756 set_value(Particle self, SparseStringKey name, IMP::String value)
4757 set_value(Particle self, SparseIntKey name, IMP::Int value)
4758 set_value(Particle self, SparseFloatKey name, IMP::Float value)
4759 set_value(Particle self, SparseParticleIndexKey name, ParticleIndex value)
4760 set_value(Particle self, ParticleIndexKey k, Particle v)
4762 return _IMP_kernel.Particle_set_value(self, *args)
4764 def get_value(self, *args):
4766 get_value(Particle self, FloatKey name) -> IMP::Float
4767 get_value(Particle self, FloatsKey name) -> IMP::Floats
4768 get_value(Particle self, IntKey name) -> IMP::Int
4769 get_value(Particle self, IntsKey name) -> IMP::Ints
4770 get_value(Particle self, StringKey name) -> IMP::String
4771 get_value(Particle self, ObjectKey name) -> Object
4772 get_value(Particle self, IMP::WeakObjectKey name) -> Object
4773 get_value(Particle self, SparseStringKey name) -> IMP::String
4774 get_value(Particle self, SparseIntKey name) -> IMP::Int
4775 get_value(Particle self, SparseFloatKey name) -> IMP::Float
4776 get_value(Particle self, SparseParticleIndexKey name) -> ParticleIndex
4777 get_value(Particle self, ParticleIndexKey k) -> Particle
4779 return _IMP_kernel.Particle_get_value(self, *args)
4781 def remove_attribute(self, *args):
4783 remove_attribute(Particle self, FloatKey name)
4784 remove_attribute(Particle self, FloatsKey name)
4785 remove_attribute(Particle self, IntKey name)
4786 remove_attribute(Particle self, IntsKey name)
4787 remove_attribute(Particle self, StringKey name)
4788 remove_attribute(Particle self, ObjectKey name)
4789 remove_attribute(Particle self, IMP::WeakObjectKey name)
4790 remove_attribute(Particle self, SparseStringKey name)
4791 remove_attribute(Particle self, SparseIntKey name)
4792 remove_attribute(Particle self, SparseFloatKey name)
4793 remove_attribute(Particle self, SparseParticleIndexKey name)
4794 remove_attribute(Particle self, ParticleIndexKey k)
4796 return _IMP_kernel.Particle_remove_attribute(self, *args)
4798 def get_particle_keys(self):
4799 r"""get_particle_keys(Particle self) -> IMP::ParticleIndexKeys"""
4800 return _IMP_kernel.Particle_get_particle_keys(self)
4802 def show(self, *args):
4803 r"""show(Particle self, _ostream out=std::cout)"""
4804 return _IMP_kernel.Particle_show(self, *args)
4806 def get_is_active(self):
4807 r"""get_is_active(Particle self) -> bool"""
4808 return _IMP_kernel.Particle_get_is_active(self)
4811 r"""get_index(Particle self) -> ParticleIndex"""
4812 return _IMP_kernel.Particle_get_index(self)
4814 def __eq__(self, *args):
4816 __eq__(Particle self, Particle o) -> bool
4817 __eq__(Particle self, Decorator d) -> bool
4819 return _IMP_kernel.Particle___eq__(self, *args)
4821 def __ne__(self, *args):
4823 __ne__(Particle self, Particle o) -> bool
4824 __ne__(Particle self, Decorator d) -> bool
4826 return _IMP_kernel.Particle___ne__(self, *args)
4828 def __le__(self, *args):
4830 __le__(Particle self, Particle o) -> bool
4831 __le__(Particle self, Decorator d) -> bool
4833 return _IMP_kernel.Particle___le__(self, *args)
4835 def __lt__(self, *args):
4837 __lt__(Particle self, Particle o) -> bool
4838 __lt__(Particle self, Decorator d) -> bool
4840 return _IMP_kernel.Particle___lt__(self, *args)
4842 def __ge__(self, *args):
4844 __ge__(Particle self, Particle o) -> bool
4845 __ge__(Particle self, Decorator d) -> bool
4847 return _IMP_kernel.Particle___ge__(self, *args)
4849 def __gt__(self, *args):
4851 __gt__(Particle self, Particle o) -> bool
4852 __gt__(Particle self, Decorator d) -> bool
4854 return _IMP_kernel.Particle___gt__(self, *args)
4856 __hash__ = ModelObject.__hash__
4860 r"""__str__(Particle self) -> std::string"""
4861 return _IMP_kernel.Particle___str__(self)
4864 r"""__repr__(Particle self) -> std::string"""
4865 return _IMP_kernel.Particle___repr__(self)
4869 return _object_cast_to_Particle(o)
4872 def _get_as_binary(self):
4873 r"""_get_as_binary(Particle self) -> PyObject *"""
4874 return _IMP_kernel.Particle__get_as_binary(self)
4876 def _set_from_binary(self, p):
4877 r"""_set_from_binary(Particle self, PyObject * p)"""
4878 return _IMP_kernel.Particle__set_from_binary(self, p)
4880 def __getstate__(self):
4881 p = self._get_as_binary()
4882 if len(self.__dict__) > 1:
4883 d = self.__dict__.copy()
4888 def __setstate__(self, p):
4889 if not hasattr(self,
'this'):
4891 if isinstance(p, tuple):
4893 self.__dict__.update(d)
4894 return self._set_from_binary(p)
4898 _IMP_kernel.Particle_swigregister(Particle)
4899 class _ParticleAdaptor(_InputAdaptor):
4900 r"""Proxy of C++ IMP::ParticleAdaptor class."""
4902 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4903 __repr__ = _swig_repr
4905 def __init__(self, *args):
4907 __init__(_ParticleAdaptor self) -> _ParticleAdaptor
4908 __init__(_ParticleAdaptor self, Particle p) -> _ParticleAdaptor
4909 __init__(_ParticleAdaptor self, Decorator d) -> _ParticleAdaptor
4911 _IMP_kernel._ParticleAdaptor_swiginit(self, _IMP_kernel.new__ParticleAdaptor(*args))
4913 def get_model(self):
4914 r"""get_model(_ParticleAdaptor self) -> Model"""
4915 return _IMP_kernel._ParticleAdaptor_get_model(self)
4917 def get_particle_index(self):
4918 r"""get_particle_index(_ParticleAdaptor self) -> ParticleIndex"""
4919 return _IMP_kernel._ParticleAdaptor_get_particle_index(self)
4920 __swig_destroy__ = _IMP_kernel.delete__ParticleAdaptor
4923 _IMP_kernel._ParticleAdaptor_swigregister(_ParticleAdaptor)
4924 class _DependencyGraphVertexIndex(object):
4925 r"""Proxy of C++ IMP::DependencyGraphVertexIndex class."""
4927 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4928 __repr__ = _swig_repr
4931 r"""__init__(_DependencyGraphVertexIndex self) -> _DependencyGraphVertexIndex"""
4932 _IMP_kernel._DependencyGraphVertexIndex_swiginit(self, _IMP_kernel.new__DependencyGraphVertexIndex())
4933 __swig_destroy__ = _IMP_kernel.delete__DependencyGraphVertexIndex
4936 _IMP_kernel._DependencyGraphVertexIndex_swigregister(_DependencyGraphVertexIndex)
4938 def show_as_graphviz(name, out):
4939 r"""show_as_graphviz(IMP::DependencyGraph const & name, TextOutput out)"""
4940 return _IMP_kernel.show_as_graphviz(name, out)
4942 def get_vertex_index(g):
4943 r"""get_vertex_index(IMP::DependencyGraph const & g) -> _DependencyGraphVertexIndex"""
4944 return _IMP_kernel.get_vertex_index(g)
4947 r"""get_dependency_graph(Model m) -> IMP::DependencyGraph"""
4948 return _IMP_kernel.get_dependency_graph(m)
4951 r"""get_pruned_dependency_graph(Model m) -> IMP::DependencyGraph"""
4952 return _IMP_kernel.get_pruned_dependency_graph(m)
4954 def get_dependent_particles(p, all, dg, index):
4955 r"""get_dependent_particles(ModelObject p, IMP::ModelObjectsTemp const & all, IMP::DependencyGraph const & dg, _DependencyGraphVertexIndex index) -> IMP::ParticlesTemp"""
4956 return _IMP_kernel.get_dependent_particles(p, all, dg, index)
4958 def get_required_score_states(*args):
4960 get_required_score_states(IMP::ModelObjectsTemp const & mos, IMP::ScoreStatesTemp exclude=IMP::ScoreStatesTemp()) -> IMP::ScoreStatesTemp
4961 get_required_score_states(ModelObject p, IMP::ModelObjectsTemp const & all, IMP::DependencyGraph const & dg, _DependencyGraphVertexIndex index) -> IMP::ScoreStatesTemp
4962 get_required_score_states(Model m, ParticleIndex pi) -> IMP::ScoreStatesTemp
4964 return _IMP_kernel.get_required_score_states(*args)
4965 class ScoringFunction(ModelObject):
4966 r"""Proxy of C++ IMP::ScoringFunction class."""
4968 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
4970 def do_add_score_and_derivatives(self, sa, ss):
4971 r"""do_add_score_and_derivatives(ScoringFunction self, ScoreAccumulator sa, IMP::ScoreStatesTemp const & ss)"""
4972 return _IMP_kernel.ScoringFunction_do_add_score_and_derivatives(self, sa, ss)
4974 def do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis, ss):
4975 r"""do_add_score_and_derivatives_moved(ScoringFunction self, ScoreAccumulator sa, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis, IMP::ScoreStatesTemp const & ss)"""
4976 return _IMP_kernel.ScoringFunction_do_add_score_and_derivatives_moved(self, sa, moved_pis, reset_pis, ss)
4978 def get_score_accumulator_if_below(self, deriv, max):
4979 r"""get_score_accumulator_if_below(ScoringFunction self, bool deriv, double max) -> ScoreAccumulator"""
4980 return _IMP_kernel.ScoringFunction_get_score_accumulator_if_below(self, deriv, max)
4982 def get_score_accumulator_if_good(self, deriv):
4983 r"""get_score_accumulator_if_good(ScoringFunction self, bool deriv) -> ScoreAccumulator"""
4984 return _IMP_kernel.ScoringFunction_get_score_accumulator_if_good(self, deriv)
4986 def get_score_accumulator(self, deriv):
4987 r"""get_score_accumulator(ScoringFunction self, bool deriv) -> ScoreAccumulator"""
4988 return _IMP_kernel.ScoringFunction_get_score_accumulator(self, deriv)
4990 def __init__(self, *args):
4992 __init__(ScoringFunction self, Model m, std::string name) -> ScoringFunction
4993 __init__(ScoringFunction self) -> ScoringFunction
4995 if self.__class__ == ScoringFunction:
4999 _IMP_kernel.ScoringFunction_swiginit(self, _IMP_kernel.new_ScoringFunction(_self, *args))
5001 if self.__class__ != ScoringFunction:
5002 _director_objects.register(self)
5007 def do_get_outputs(self):
5008 r"""do_get_outputs(ScoringFunction self) -> IMP::ModelObjectsTemp"""
5009 return _IMP_kernel.ScoringFunction_do_get_outputs(self)
5011 def evaluate(self, derivatives):
5012 r"""evaluate(ScoringFunction self, bool derivatives) -> double"""
5013 return _IMP_kernel.ScoringFunction_evaluate(self, derivatives)
5015 def evaluate_if_good(self, derivatives):
5016 r"""evaluate_if_good(ScoringFunction self, bool derivatives) -> double"""
5017 return _IMP_kernel.ScoringFunction_evaluate_if_good(self, derivatives)
5019 def evaluate_if_below(self, derivatives, max):
5020 r"""evaluate_if_below(ScoringFunction self, bool derivatives, double max) -> double"""
5021 return _IMP_kernel.ScoringFunction_evaluate_if_below(self, derivatives, max)
5023 def evaluate_moved(self, derivatives, moved_pis, reset_pis):
5024 r"""evaluate_moved(ScoringFunction self, bool derivatives, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis) -> double"""
5025 return _IMP_kernel.ScoringFunction_evaluate_moved(self, derivatives, moved_pis, reset_pis)
5027 def evaluate_moved_if_below(self, derivatives, moved_pis, reset_pis, max):
5028 r"""evaluate_moved_if_below(ScoringFunction self, bool derivatives, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis, double max) -> double"""
5029 return _IMP_kernel.ScoringFunction_evaluate_moved_if_below(self, derivatives, moved_pis, reset_pis, max)
5031 def evaluate_moved_if_good(self, derivatives, moved_pis, reset_pis):
5032 r"""evaluate_moved_if_good(ScoringFunction self, bool derivatives, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis) -> double"""
5033 return _IMP_kernel.ScoringFunction_evaluate_moved_if_good(self, derivatives, moved_pis, reset_pis)
5035 def get_had_good_score(self):
5036 r"""get_had_good_score(ScoringFunction self) -> bool"""
5037 return _IMP_kernel.ScoringFunction_get_had_good_score(self)
5039 def get_last_score(self):
5040 r"""get_last_score(ScoringFunction self) -> double"""
5041 return _IMP_kernel.ScoringFunction_get_last_score(self)
5044 r"""create_restraints(ScoringFunction self) -> IMP::Restraints"""
5045 return _IMP_kernel.ScoringFunction_create_restraints(self)
5048 r"""__str__(ScoringFunction self) -> std::string"""
5049 return _IMP_kernel.ScoringFunction___str__(self)
5052 r"""__repr__(ScoringFunction self) -> std::string"""
5053 return _IMP_kernel.ScoringFunction___repr__(self)
5057 return _object_cast_to_ScoringFunction(o)
5060 def get_type_name(self):
5061 return self.__class__.__name__
5062 def do_show(self, out):
5064 def get_version_info(self):
5066 return VersionInfo(self.__module__,
5073 return _object_cast_to_ScoringFunction(o)
5075 __swig_destroy__ = _IMP_kernel.delete_ScoringFunction
5076 def __disown__(self):
5078 _IMP_kernel.disown_ScoringFunction(self)
5079 return weakref.proxy(self)
5081 def do_destroy(self):
5082 r"""do_destroy(ScoringFunction self)"""
5083 return _IMP_kernel.ScoringFunction_do_destroy(self)
5085 def handle_set_has_required_score_states(self, arg0):
5086 r"""handle_set_has_required_score_states(ScoringFunction self, bool arg0)"""
5087 return _IMP_kernel.ScoringFunction_handle_set_has_required_score_states(self, arg0)
5089 def do_get_inputs(self):
5090 r"""do_get_inputs(ScoringFunction self) -> IMP::ModelObjectsTemp"""
5091 return _IMP_kernel.ScoringFunction_do_get_inputs(self)
5093 def do_get_interactions(self):
5094 r"""do_get_interactions(ScoringFunction self) -> IMP::ModelObjectsTemps"""
5095 return _IMP_kernel.ScoringFunction_do_get_interactions(self)
5098 _IMP_kernel.ScoringFunction_swigregister(ScoringFunction)
5102 create_decomposition(IMP::RestraintsTemp const & rs) -> IMP::Restraints
5103 create_decomposition(ScoringFunction sf) -> IMP::ScoringFunctions
5105 return _IMP_kernel.create_decomposition(*args)
5106 class _ScoringFunctionAdaptor(_InputAdaptor):
5107 r"""Proxy of C++ IMP::ScoringFunctionAdaptor class."""
5109 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5110 __repr__ = _swig_repr
5112 def __init__(self, *args):
5114 __init__(_ScoringFunctionAdaptor self) -> _ScoringFunctionAdaptor
5115 __init__(_ScoringFunctionAdaptor self, ScoringFunction sf) -> _ScoringFunctionAdaptor
5116 __init__(_ScoringFunctionAdaptor self, IMP::RestraintsTemp const & sf) -> _ScoringFunctionAdaptor
5117 __init__(_ScoringFunctionAdaptor self, IMP::Restraints const & sf) -> _ScoringFunctionAdaptor
5118 __init__(_ScoringFunctionAdaptor self, Restraint sf) -> _ScoringFunctionAdaptor
5120 _IMP_kernel._ScoringFunctionAdaptor_swiginit(self, _IMP_kernel.new__ScoringFunctionAdaptor(*args))
5121 __swig_destroy__ = _IMP_kernel.delete__ScoringFunctionAdaptor
5124 _IMP_kernel._ScoringFunctionAdaptor_swigregister(_ScoringFunctionAdaptor)
5127 r"""show_restraint_hierarchy(_ScoringFunctionAdaptor rs, _ostream out=std::cout)"""
5128 return _IMP_kernel.show_restraint_hierarchy(*args)
5129 class Undecorator(Object):
5130 r"""Proxy of C++ IMP::Undecorator class."""
5132 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5134 def __init__(self, m, name):
5135 r"""__init__(Undecorator self, Model m, std::string name) -> Undecorator"""
5136 if self.__class__ == Undecorator:
5140 _IMP_kernel.Undecorator_swiginit(self, _IMP_kernel.new_Undecorator(_self, m, name))
5142 if self.__class__ != Undecorator:
5143 _director_objects.register(self)
5148 def teardown(self, pi):
5149 r"""teardown(Undecorator self, ParticleIndex pi)"""
5150 return _IMP_kernel.Undecorator_teardown(self, pi)
5153 r"""__str__(Undecorator self) -> std::string"""
5154 return _IMP_kernel.Undecorator___str__(self)
5157 r"""__repr__(Undecorator self) -> std::string"""
5158 return _IMP_kernel.Undecorator___repr__(self)
5162 return _object_cast_to_Undecorator(o)
5165 def get_type_name(self):
5166 return self.__class__.__name__
5167 def do_show(self, out):
5169 def get_version_info(self):
5171 return VersionInfo(self.__module__,
5178 return _object_cast_to_Undecorator(o)
5180 __swig_destroy__ = _IMP_kernel.delete_Undecorator
5181 def __disown__(self):
5183 _IMP_kernel.disown_Undecorator(self)
5184 return weakref.proxy(self)
5186 def do_destroy(self):
5187 r"""do_destroy(Undecorator self)"""
5188 return _IMP_kernel.Undecorator_do_destroy(self)
5191 _IMP_kernel.Undecorator_swigregister(Undecorator)
5192 class Model(Object):
5193 r"""Proxy of C++ IMP::Model class."""
5195 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5197 def __init__(self, *args):
5198 r"""__init__(Model self, std::string name="Model %1%") -> Model"""
5199 _IMP_kernel.Model_swiginit(self, _IMP_kernel.new_Model(*args))
5201 if self
not in _models_set:
5202 _models_set.add(self)
5207 def clear_particle_caches(self, pi):
5208 r"""clear_particle_caches(Model self, ParticleIndex pi)"""
5209 return _IMP_kernel.Model_clear_particle_caches(self, pi)
5212 r"""add_particle(Model self, std::string name) -> ParticleIndex"""
5213 return _IMP_kernel.Model_add_particle(self, name)
5215 def get_particle_name(self, pi):
5216 r"""get_particle_name(Model self, ParticleIndex pi) -> std::string"""
5217 return _IMP_kernel.Model_get_particle_name(self, pi)
5219 def add_undecorator(self, pi, d):
5220 r"""add_undecorator(Model self, ParticleIndex pi, Undecorator d)"""
5221 return _IMP_kernel.Model_add_undecorator(self, pi, d)
5223 def get_dependent_restraints_uncached(self, pi):
5224 r"""get_dependent_restraints_uncached(Model self, ParticleIndex pi) -> IMP::RestraintsTemp"""
5225 return _IMP_kernel.Model_get_dependent_restraints_uncached(self, pi)
5227 def get_dependent_particles_uncached(self, pi):
5228 r"""get_dependent_particles_uncached(Model self, ParticleIndex pi) -> IMP::ParticlesTemp"""
5229 return _IMP_kernel.Model_get_dependent_particles_uncached(self, pi)
5231 def get_dependent_score_states_uncached(self, pi):
5232 r"""get_dependent_score_states_uncached(Model self, ParticleIndex pi) -> IMP::ScoreStatesTemp"""
5233 return _IMP_kernel.Model_get_dependent_score_states_uncached(self, pi)
5234 def __get_score_states(self):
return _list_util.VarList(getdimfunc=self.get_number_of_score_states, getfunc=self.get_score_state, erasefunc=self.erase_score_state, appendfunc=self.add_score_state, extendfunc=self.add_score_states, clearfunc=self.clear_score_states, indexfunc=self._python_index_score_state)
5235 def __set_score_states(self, obj): _list_util.set_varlist(self.score_states, obj)
5236 def __del_score_states(self): _list_util.del_varlist(self.score_states)
5237 score_states = property(__get_score_states, __set_score_states, __del_score_states, doc=
"List of ##ucnames")
5239 def remove_score_state(self, d):
5240 r"""remove_score_state(Model self, ScoreState d)"""
5241 return _IMP_kernel.Model_remove_score_state(self, d)
5243 def _python_index_score_state(self, d, start, stop):
5244 r"""_python_index_score_state(Model self, ScoreState d, unsigned int start, unsigned int stop) -> unsigned int"""
5245 return _IMP_kernel.Model__python_index_score_state(self, d, start, stop)
5247 def remove_score_states(self, d):
5248 r"""remove_score_states(Model self, IMP::ScoreStates const & d)"""
5249 return _IMP_kernel.Model_remove_score_states(self, d)
5251 def set_score_states(self, ps):
5252 r"""set_score_states(Model self, IMP::ScoreStates const & ps)"""
5253 return _IMP_kernel.Model_set_score_states(self, ps)
5255 def set_score_states_order(self, objs):
5256 r"""set_score_states_order(Model self, IMP::ScoreStates const & objs)"""
5257 return _IMP_kernel.Model_set_score_states_order(self, objs)
5259 def add_score_state(self, obj):
5260 r"""add_score_state(Model self, ScoreState obj) -> unsigned int"""
5261 return _IMP_kernel.Model_add_score_state(self, obj)
5263 def add_score_states(self, objs):
5264 r"""add_score_states(Model self, IMP::ScoreStates const & objs)"""
5265 return _IMP_kernel.Model_add_score_states(self, objs)
5267 def clear_score_states(self):
5268 r"""clear_score_states(Model self)"""
5269 return _IMP_kernel.Model_clear_score_states(self)
5271 def get_number_of_score_states(self):
5272 r"""get_number_of_score_states(Model self) -> unsigned int"""
5273 return _IMP_kernel.Model_get_number_of_score_states(self)
5275 def get_has_score_states(self):
5276 r"""get_has_score_states(Model self) -> bool"""
5277 return _IMP_kernel.Model_get_has_score_states(self)
5279 def get_score_state(self, i):
5280 r"""get_score_state(Model self, unsigned int i) -> ScoreState"""
5281 return _IMP_kernel.Model_get_score_state(self, i)
5283 def get_score_states(self):
5284 r"""get_score_states(Model self) -> IMP::ScoreStates"""
5285 return _IMP_kernel.Model_get_score_states(self)
5287 def erase_score_state(self, i):
5288 r"""erase_score_state(Model self, unsigned int i)"""
5289 return _IMP_kernel.Model_erase_score_state(self, i)
5291 def reserve_score_states(self, sz):
5292 r"""reserve_score_states(Model self, unsigned int sz)"""
5293 return _IMP_kernel.Model_reserve_score_states(self, sz)
5296 r"""update(Model self)"""
5297 return _IMP_kernel.Model_update(self)
5299 def add_cache_attribute(self, *args):
5301 add_cache_attribute(Model self, FloatKey attribute_key, ParticleIndex particle, IMP::Float value)
5302 add_cache_attribute(Model self, IntKey attribute_key, ParticleIndex particle, IMP::Int value)
5303 add_cache_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle, IMP::Floats value)
5304 add_cache_attribute(Model self, IntsKey attribute_key, ParticleIndex particle, IMP::Ints value)
5305 add_cache_attribute(Model self, StringKey attribute_key, ParticleIndex particle, IMP::String value)
5306 add_cache_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle, IMP::ParticleIndexes value)
5307 add_cache_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle, ParticleIndex value)
5308 add_cache_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle, Object value)
5309 add_cache_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle, Object value)
5311 return _IMP_kernel.Model_add_cache_attribute(self, *args)
5313 def add_attribute(self, *args):
5315 add_attribute(Model self, FloatKey attribute_key, ParticleIndex particle, IMP::Float value)
5316 add_attribute(Model self, IntKey attribute_key, ParticleIndex particle, IMP::Int value)
5317 add_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle, IMP::Floats value)
5318 add_attribute(Model self, IntsKey attribute_key, ParticleIndex particle, IMP::Ints value)
5319 add_attribute(Model self, StringKey attribute_key, ParticleIndex particle, IMP::String value)
5320 add_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle, IMP::ParticleIndexes value)
5321 add_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle, ParticleIndex value)
5322 add_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle, Object value)
5323 add_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle, Object value)
5324 add_attribute(Model self, SparseStringKey attribute_key, ParticleIndex particle, IMP::String value)
5325 add_attribute(Model self, SparseIntKey attribute_key, ParticleIndex particle, IMP::Int value)
5326 add_attribute(Model self, SparseFloatKey attribute_key, ParticleIndex particle, IMP::Float value)
5327 add_attribute(Model self, SparseParticleIndexKey attribute_key, ParticleIndex particle, ParticleIndex value)
5329 return _IMP_kernel.Model_add_attribute(self, *args)
5331 def remove_attribute(self, *args):
5333 remove_attribute(Model self, FloatKey attribute_key, ParticleIndex particle)
5334 remove_attribute(Model self, IntKey attribute_key, ParticleIndex particle)
5335 remove_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle)
5336 remove_attribute(Model self, IntsKey attribute_key, ParticleIndex particle)
5337 remove_attribute(Model self, StringKey attribute_key, ParticleIndex particle)
5338 remove_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle)
5339 remove_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle)
5340 remove_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle)
5341 remove_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle)
5342 remove_attribute(Model self, SparseStringKey attribute_key, ParticleIndex particle)
5343 remove_attribute(Model self, SparseIntKey attribute_key, ParticleIndex particle)
5344 remove_attribute(Model self, SparseFloatKey attribute_key, ParticleIndex particle)
5345 remove_attribute(Model self, SparseParticleIndexKey attribute_key, ParticleIndex particle)
5347 return _IMP_kernel.Model_remove_attribute(self, *args)
5349 def get_has_attribute(self, *args):
5351 get_has_attribute(Model self, FloatKey attribute_key, ParticleIndex particle) -> bool
5352 get_has_attribute(Model self, IntKey attribute_key, ParticleIndex particle) -> bool
5353 get_has_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle) -> bool
5354 get_has_attribute(Model self, IntsKey attribute_key, ParticleIndex particle) -> bool
5355 get_has_attribute(Model self, StringKey attribute_key, ParticleIndex particle) -> bool
5356 get_has_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle) -> bool
5357 get_has_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle) -> bool
5358 get_has_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle) -> bool
5359 get_has_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle) -> bool
5360 get_has_attribute(Model self, SparseStringKey attribute_key, ParticleIndex particle) -> bool
5361 get_has_attribute(Model self, SparseIntKey attribute_key, ParticleIndex particle) -> bool
5362 get_has_attribute(Model self, SparseFloatKey attribute_key, ParticleIndex particle) -> bool
5363 get_has_attribute(Model self, SparseParticleIndexKey attribute_key, ParticleIndex particle) -> bool
5365 return _IMP_kernel.Model_get_has_attribute(self, *args)
5367 def set_attribute(self, *args):
5369 set_attribute(Model self, FloatKey attribute_key, ParticleIndex particle, IMP::Float value)
5370 set_attribute(Model self, IntKey attribute_key, ParticleIndex particle, IMP::Int value)
5371 set_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle, IMP::Floats value)
5372 set_attribute(Model self, IntsKey attribute_key, ParticleIndex particle, IMP::Ints value)
5373 set_attribute(Model self, StringKey attribute_key, ParticleIndex particle, IMP::String value)
5374 set_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle, IMP::ParticleIndexes value)
5375 set_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle, ParticleIndex value)
5376 set_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle, Object value)
5377 set_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle, Object value)
5378 set_attribute(Model self, SparseStringKey attribute_key, ParticleIndex particle, IMP::String value)
5379 set_attribute(Model self, SparseIntKey attribute_key, ParticleIndex particle, IMP::Int value)
5380 set_attribute(Model self, SparseFloatKey attribute_key, ParticleIndex particle, IMP::Float value)
5381 set_attribute(Model self, SparseParticleIndexKey attribute_key, ParticleIndex particle, ParticleIndex value)
5383 return _IMP_kernel.Model_set_attribute(self, *args)
5385 def get_attribute(self, *args):
5387 get_attribute(Model self, FloatKey attribute_key, ParticleIndex particle) -> IMP::Float
5388 get_attribute(Model self, IntKey attribute_key, ParticleIndex particle) -> IMP::Int
5389 get_attribute(Model self, FloatsKey attribute_key, ParticleIndex particle) -> IMP::Floats
5390 get_attribute(Model self, IntsKey attribute_key, ParticleIndex particle) -> IMP::Ints
5391 get_attribute(Model self, StringKey attribute_key, ParticleIndex particle) -> IMP::String
5392 get_attribute(Model self, ParticleIndexesKey attribute_key, ParticleIndex particle) -> IMP::ParticleIndexes
5393 get_attribute(Model self, ParticleIndexKey attribute_key, ParticleIndex particle) -> ParticleIndex
5394 get_attribute(Model self, ObjectKey attribute_key, ParticleIndex particle) -> Object
5395 get_attribute(Model self, IMP::WeakObjectKey attribute_key, ParticleIndex particle) -> Object
5396 get_attribute(Model self, SparseStringKey attribute_key, ParticleIndex particle) -> IMP::String
5397 get_attribute(Model self, SparseIntKey attribute_key, ParticleIndex particle) -> IMP::Int
5398 get_attribute(Model self, SparseFloatKey attribute_key, ParticleIndex particle) -> IMP::Float
5399 get_attribute(Model self, SparseParticleIndexKey attribute_key, ParticleIndex particle) -> ParticleIndex
5401 return _IMP_kernel.Model_get_attribute(self, *args)
5403 def set_is_optimized(self, arg2, arg3, arg4):
5404 r"""set_is_optimized(Model self, FloatKey arg2, ParticleIndex arg3, bool arg4)"""
5405 return _IMP_kernel.Model_set_is_optimized(self, arg2, arg3, arg4)
5407 def add_to_derivative(self, k, particle, v, da):
5408 r"""add_to_derivative(Model self, FloatKey k, ParticleIndex particle, double v, DerivativeAccumulator da)"""
5409 return _IMP_kernel.Model_add_to_derivative(self, k, particle, v, da)
5411 def get_particle(self, p):
5412 r"""get_particle(Model self, ParticleIndex p) -> Particle"""
5413 return _IMP_kernel.Model_get_particle(self, p)
5415 def get_has_particle(self, p):
5416 r"""get_has_particle(Model self, ParticleIndex p) -> bool"""
5417 return _IMP_kernel.Model_get_has_particle(self, p)
5420 r"""get_particle_indexes(Model self) -> IMP::ParticleIndexes"""
5421 return _IMP_kernel.Model_get_particle_indexes(self)
5423 def get_model_objects(self):
5424 r"""get_model_objects(Model self) -> IMP::ModelObjectsTemp"""
5425 return _IMP_kernel.Model_get_model_objects(self)
5427 def remove_particle(self, pi):
5428 r"""remove_particle(Model self, ParticleIndex pi)"""
5429 return _IMP_kernel.Model_remove_particle(self, pi)
5431 def add_data(self, mk, o):
5432 r"""add_data(Model self, ModelKey mk, Object o)"""
5433 return _IMP_kernel.Model_add_data(self, mk, o)
5435 def get_data(self, mk):
5436 r"""get_data(Model self, ModelKey mk) -> Object"""
5437 return _IMP_kernel.Model_get_data(self, mk)
5439 def remove_data(self, mk):
5440 r"""remove_data(Model self, ModelKey mk)"""
5441 return _IMP_kernel.Model_remove_data(self, mk)
5443 def get_has_data(self, mk):
5444 r"""get_has_data(Model self, ModelKey mk) -> bool"""
5445 return _IMP_kernel.Model_get_has_data(self, mk)
5448 r"""get_age(Model self) -> unsigned int"""
5449 return _IMP_kernel.Model_get_age(self)
5451 def get_trigger_last_updated(self, tk):
5452 r"""get_trigger_last_updated(Model self, TriggerKey tk) -> unsigned int"""
5453 return _IMP_kernel.Model_get_trigger_last_updated(self, tk)
5455 def set_trigger_updated(self, tk):
5456 r"""set_trigger_updated(Model self, TriggerKey tk)"""
5457 return _IMP_kernel.Model_set_trigger_updated(self, tk)
5459 def get_dependencies_updated(self):
5460 r"""get_dependencies_updated(Model self) -> unsigned int"""
5461 return _IMP_kernel.Model_get_dependencies_updated(self)
5463 def save_dependencies(self):
5464 r"""save_dependencies(Model self)"""
5465 return _IMP_kernel.Model_save_dependencies(self)
5467 def restore_dependencies(self):
5468 r"""restore_dependencies(Model self)"""
5469 return _IMP_kernel.Model_restore_dependencies(self)
5471 def get_particles_size(self):
5472 r"""get_particles_size(Model self) -> unsigned int"""
5473 return _IMP_kernel.Model_get_particles_size(self)
5475 def get_unique_id(self):
5476 r"""get_unique_id(Model self) -> uint32_t"""
5477 return _IMP_kernel.Model_get_unique_id(self)
5480 def get_by_unique_id(id):
5481 r"""get_by_unique_id(uint32_t id) -> Model"""
5482 return _IMP_kernel.Model_get_by_unique_id(id)
5484 def get_version_info(self):
5485 r"""get_version_info(Model self) -> VersionInfo"""
5486 return _IMP_kernel.Model_get_version_info(self)
5487 __swig_destroy__ = _IMP_kernel.delete_Model
5489 r"""__del__(Model self)"""
5491 _director_objects.cleanup()
5497 def do_destroy(self):
5498 r"""do_destroy(Model self)"""
5499 return _IMP_kernel.Model_do_destroy(self)
5502 r"""__str__(Model self) -> std::string"""
5503 return _IMP_kernel.Model___str__(self)
5506 r"""__repr__(Model self) -> std::string"""
5507 return _IMP_kernel.Model___repr__(self)
5511 return _object_cast_to_Model(o)
5514 def _get_as_binary(self):
5515 r"""_get_as_binary(Model self) -> PyObject *"""
5516 return _IMP_kernel.Model__get_as_binary(self)
5518 def _set_from_binary(self, p):
5519 r"""_set_from_binary(Model self, PyObject * p)"""
5520 return _IMP_kernel.Model__set_from_binary(self, p)
5522 def __getstate__(self):
5523 p = self._get_as_binary()
5524 if len(self.__dict__) > 1:
5525 d = self.__dict__.copy()
5530 def __setstate__(self, p):
5531 if not hasattr(self,
'this'):
5533 if isinstance(p, tuple):
5535 self.__dict__.update(d)
5536 return self._set_from_binary(p)
5540 """Get the model's attribute array for IntKey k as a NumPy array.
5541 The array is indexed by ParticleIndex; particles that don't have
5542 this attribute will either be off the end of the array or will have
5544 This is a NumPy view that shares memory with the Model. Thus,
5545 any changes to values in this list will be reflected in the Model.
5546 Also, if the Model attribute array moves in memory (e.g. if particles
5547 or attributes are added) this array will be invalidated, so it is
5548 unsafe to keep it around long term.
5550 return _get_ints_numpy(self, k, self)
5553 """Get the model's attribute array for FloatKey k as a NumPy array.
5554 See Model::get_ints_numpy() for more details."""
5555 return _get_floats_numpy(self, k, self)
5558 """Get the model's attribute derivatives array for FloatKey k
5559 as a NumPy array. See Model::get_ints_numpy() for more details."""
5560 return _get_derivatives_numpy(self, k, self)
5563 """Get the model's XYZR attribute arrays as NumPy arrays.
5564 The attribute arrays for Cartesian coordinates and radii are
5565 stored separately from those for other FloatKeys. This function
5566 returns a tuple of two NumPy arrays, the first of coordinates and
5567 the second of radii. See Model::get_ints_numpy() for more details."""
5568 return _get_spheres_numpy(self, self)
5571 """Get the model's XYZR attribute derivatives arrays as NumPy arrays.
5572 See Model::get_ints_numpy() for more details."""
5573 return _get_sphere_derivatives_numpy(self, self)
5577 _IMP_kernel.Model_swigregister(Model)
5579 r"""Proxy of C++ IMP::Decorator class."""
5581 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5582 __repr__ = _swig_repr
5584 def __init__(self, p):
5585 r"""__init__(Decorator self, _ParticleAdaptor p) -> Decorator"""
5586 _IMP_kernel.Decorator_swiginit(self, _IMP_kernel.new_Decorator(p))
5588 def __ne__(self, o):
5589 r"""__ne__(Decorator self, Object o) -> bool"""
5590 return _IMP_kernel.Decorator___ne__(self, o)
5592 def __lt__(self, o):
5593 r"""__lt__(Decorator self, Object o) -> bool"""
5594 return _IMP_kernel.Decorator___lt__(self, o)
5596 def __gt__(self, o):
5597 r"""__gt__(Decorator self, Object o) -> bool"""
5598 return _IMP_kernel.Decorator___gt__(self, o)
5600 def __ge__(self, o):
5601 r"""__ge__(Decorator self, Object o) -> bool"""
5602 return _IMP_kernel.Decorator___ge__(self, o)
5604 def __le__(self, o):
5605 r"""__le__(Decorator self, Object o) -> bool"""
5606 return _IMP_kernel.Decorator___le__(self, o)
5609 r"""get_particle(Decorator self) -> Particle"""
5610 return _IMP_kernel.Decorator_get_particle(self)
5612 def get_particle_index(self):
5613 r"""get_particle_index(Decorator self) -> ParticleIndex"""
5614 return _IMP_kernel.Decorator_get_particle_index(self)
5616 def get_model(self):
5617 m = _IMP_kernel.Decorator_get_model(self)
5618 if m
in _models_set:
5619 m = _models_set_get(m)
5624 def get_is_valid(self):
5625 r"""get_is_valid(Decorator self) -> bool"""
5626 return _IMP_kernel.Decorator_get_is_valid(self)
5629 r"""__hash__(Decorator self) -> std::size_t"""
5630 return _IMP_kernel.Decorator___hash__(self)
5632 def __eq__(self, *args):
5634 __eq__(Decorator self, Object o) -> bool
5635 __eq__(Decorator self, Decorator o) -> bool
5636 __eq__(Decorator self, Particle o) -> bool
5638 return _IMP_kernel.Decorator___eq__(self, *args)
5641 r"""__bool__(Decorator self) -> bool"""
5642 return _IMP_kernel.Decorator___bool__(self)
5643 __swig_destroy__ = _IMP_kernel.delete_Decorator
5646 _IMP_kernel.Decorator_swigregister(Decorator)
5648 def check_particle(m, pi):
5649 r"""check_particle(Model m, ParticleIndex pi)"""
5650 return _IMP_kernel.check_particle(m, pi)
5652 r"""Proxy of C++ IMP::UnaryFunction class."""
5654 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5656 def __init__(self, *args):
5657 r"""__init__(UnaryFunction self, std::string name="UnaryFunction%1%") -> UnaryFunction"""
5658 if self.__class__ == UnaryFunction:
5662 _IMP_kernel.UnaryFunction_swiginit(self, _IMP_kernel.new_UnaryFunction(_self, *args))
5664 if self.__class__ != UnaryFunction:
5665 _director_objects.register(self)
5670 def evaluate(self, feature):
5671 r"""evaluate(UnaryFunction self, double feature) -> double"""
5672 return _IMP_kernel.UnaryFunction_evaluate(self, feature)
5674 def evaluate_with_derivative(self, feature):
5675 r"""evaluate_with_derivative(UnaryFunction self, double feature) -> IMP::DerivativePair"""
5676 return _IMP_kernel.UnaryFunction_evaluate_with_derivative(self, feature)
5677 __swig_destroy__ = _IMP_kernel.delete_UnaryFunction
5680 r"""__str__(UnaryFunction self) -> std::string"""
5681 return _IMP_kernel.UnaryFunction___str__(self)
5684 r"""__repr__(UnaryFunction self) -> std::string"""
5685 return _IMP_kernel.UnaryFunction___repr__(self)
5689 return _object_cast_to_UnaryFunction(o)
5692 def get_type_name(self):
5693 return self.__class__.__name__
5694 def do_show(self, out):
5698 return VersionInfo(self.__module__,
5705 return _object_cast_to_UnaryFunction(o)
5707 def __disown__(self):
5709 _IMP_kernel.disown_UnaryFunction(self)
5710 return weakref.proxy(self)
5713 r"""do_destroy(UnaryFunction self)"""
5714 return _IMP_kernel.UnaryFunction_do_destroy(self)
5717 _IMP_kernel.UnaryFunction_swigregister(UnaryFunction)
5718 class OptimizerState(ModelObject):
5719 r"""Proxy of C++ IMP::OptimizerState class."""
5721 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5723 def __init__(self, *args):
5725 __init__(OptimizerState self, Model m, std::string name) -> OptimizerState
5726 __init__(OptimizerState self) -> OptimizerState
5728 if self.__class__ == OptimizerState:
5732 _IMP_kernel.OptimizerState_swiginit(self, _IMP_kernel.new_OptimizerState(_self, *args))
5734 if self.__class__ != OptimizerState:
5735 _director_objects.register(self)
5741 r"""update(OptimizerState self)"""
5742 return _IMP_kernel.OptimizerState_update(self)
5744 def set_is_optimizing(self, arg0):
5745 r"""set_is_optimizing(OptimizerState self, bool arg0)"""
5746 return _IMP_kernel.OptimizerState_set_is_optimizing(self, arg0)
5748 def get_optimizer(self):
5749 r"""get_optimizer(OptimizerState self) -> Optimizer"""
5750 return _IMP_kernel.OptimizerState_get_optimizer(self)
5752 def set_period(self, p):
5753 r"""set_period(OptimizerState self, unsigned int p)"""
5754 return _IMP_kernel.OptimizerState_set_period(self, p)
5756 def get_period(self):
5757 r"""get_period(OptimizerState self) -> unsigned int"""
5758 return _IMP_kernel.OptimizerState_get_period(self)
5761 r"""reset(OptimizerState self)"""
5762 return _IMP_kernel.OptimizerState_reset(self)
5764 def update_always(self):
5765 r"""update_always(OptimizerState self)"""
5766 return _IMP_kernel.OptimizerState_update_always(self)
5768 def get_number_of_updates(self):
5769 r"""get_number_of_updates(OptimizerState self) -> unsigned int"""
5770 return _IMP_kernel.OptimizerState_get_number_of_updates(self)
5772 def set_number_of_updates(self, n):
5773 r"""set_number_of_updates(OptimizerState self, unsigned int n)"""
5774 return _IMP_kernel.OptimizerState_set_number_of_updates(self, n)
5775 __swig_destroy__ = _IMP_kernel.delete_OptimizerState
5777 def do_update(self, arg0):
5778 r"""do_update(OptimizerState self, unsigned int arg0)"""
5779 return _IMP_kernel.OptimizerState_do_update(self, arg0)
5781 def do_set_is_optimizing(self, arg0):
5782 r"""do_set_is_optimizing(OptimizerState self, bool arg0)"""
5783 return _IMP_kernel.OptimizerState_do_set_is_optimizing(self, arg0)
5785 def do_get_inputs(self):
5786 r"""do_get_inputs(OptimizerState self) -> IMP::ModelObjectsTemp"""
5787 return _IMP_kernel.OptimizerState_do_get_inputs(self)
5789 def do_get_outputs(self):
5790 r"""do_get_outputs(OptimizerState self) -> IMP::ModelObjectsTemp"""
5791 return _IMP_kernel.OptimizerState_do_get_outputs(self)
5794 r"""__str__(OptimizerState self) -> std::string"""
5795 return _IMP_kernel.OptimizerState___str__(self)
5798 r"""__repr__(OptimizerState self) -> std::string"""
5799 return _IMP_kernel.OptimizerState___repr__(self)
5803 return _object_cast_to_OptimizerState(o)
5806 def get_type_name(self):
5807 return self.__class__.__name__
5808 def do_show(self, out):
5812 return VersionInfo(self.__module__,
5819 return _object_cast_to_OptimizerState(o)
5821 def __disown__(self):
5823 _IMP_kernel.disown_OptimizerState(self)
5824 return weakref.proxy(self)
5827 r"""do_destroy(OptimizerState self)"""
5828 return _IMP_kernel.OptimizerState_do_destroy(self)
5830 def handle_set_has_required_score_states(self, arg0):
5831 r"""handle_set_has_required_score_states(OptimizerState self, bool arg0)"""
5832 return _IMP_kernel.OptimizerState_handle_set_has_required_score_states(self, arg0)
5834 def do_get_interactions(self):
5835 r"""do_get_interactions(OptimizerState self) -> IMP::ModelObjectsTemps"""
5836 return _IMP_kernel.OptimizerState_do_get_interactions(self)
5839 _IMP_kernel.OptimizerState_swigregister(OptimizerState)
5840 class Refiner(_ParticleInputs,
Object):
5841 r"""Proxy of C++ IMP::Refiner class."""
5843 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5845 def __init__(self, *args):
5846 r"""__init__(Refiner self, std::string name="Refiner %1%", bool is_by_ref=False) -> Refiner"""
5847 if self.__class__ == Refiner:
5851 _IMP_kernel.Refiner_swiginit(self, _IMP_kernel.new_Refiner(_self, *args))
5853 if self.__class__ != Refiner:
5854 _director_objects.register(self)
5859 def get_can_refine(self, arg0):
5860 r"""get_can_refine(Refiner self, Particle arg0) -> bool"""
5861 return _IMP_kernel.Refiner_get_can_refine(self, arg0)
5863 def get_refined_indexes(self, m, pi):
5864 r"""get_refined_indexes(Refiner self, Model m, ParticleIndex pi) -> IMP::ParticleIndexes"""
5865 return _IMP_kernel.Refiner_get_refined_indexes(self, m, pi)
5867 def get_refined_indexes_by_ref(self, m, pi):
5868 r"""get_refined_indexes_by_ref(Refiner self, Model m, ParticleIndex pi) -> IMP::ParticleIndexes const &"""
5869 return _IMP_kernel.Refiner_get_refined_indexes_by_ref(self, m, pi)
5871 def get_is_by_ref_supported(self):
5872 r"""get_is_by_ref_supported(Refiner self) -> bool"""
5873 return _IMP_kernel.Refiner_get_is_by_ref_supported(self)
5875 def get_refined(self, *args):
5877 get_refined(Refiner self, Particle a) -> IMP::ParticlesTemp const
5878 get_refined(Refiner self, Particle a, unsigned int i) -> Particle
5880 return _IMP_kernel.Refiner_get_refined(self, *args)
5882 def get_number_of_refined(self, a):
5883 r"""get_number_of_refined(Refiner self, Particle a) -> unsigned int"""
5884 return _IMP_kernel.Refiner_get_number_of_refined(self, a)
5887 r"""__str__(Refiner self) -> std::string"""
5888 return _IMP_kernel.Refiner___str__(self)
5891 r"""__repr__(Refiner self) -> std::string"""
5892 return _IMP_kernel.Refiner___repr__(self)
5896 return _object_cast_to_Refiner(o)
5899 def get_type_name(self):
5900 return self.__class__.__name__
5901 def do_show(self, out):
5905 return VersionInfo(self.__module__,
5912 return _object_cast_to_Refiner(o)
5914 __swig_destroy__ = _IMP_kernel.delete_Refiner
5915 def __disown__(self):
5917 _IMP_kernel.disown_Refiner(self)
5918 return weakref.proxy(self)
5920 def do_get_inputs(self, m, pis):
5921 r"""do_get_inputs(Refiner self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
5922 return _IMP_kernel.Refiner_do_get_inputs(self, m, pis)
5925 r"""do_destroy(Refiner self)"""
5926 return _IMP_kernel.Refiner_do_destroy(self)
5929 _IMP_kernel.Refiner_swigregister(Refiner)
5930 class Optimizer(ModelObject):
5931 r"""Proxy of C++ IMP::Optimizer class."""
5933 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
5935 def set_is_optimizing_states(self, tf):
5936 r"""set_is_optimizing_states(Optimizer self, bool tf)"""
5937 return _IMP_kernel.Optimizer_set_is_optimizing_states(self, tf)
5939 def get_optimizer_state_inputs(self):
5940 r"""get_optimizer_state_inputs(Optimizer self) -> IMP::ModelObjectsTemp"""
5941 return _IMP_kernel.Optimizer_get_optimizer_state_inputs(self)
5943 def do_get_inputs(self):
5944 r"""do_get_inputs(Optimizer self) -> IMP::ModelObjectsTemp"""
5945 return _IMP_kernel.Optimizer_do_get_inputs(self)
5947 def do_get_outputs(self):
5948 r"""do_get_outputs(Optimizer self) -> IMP::ModelObjectsTemp"""
5949 return _IMP_kernel.Optimizer_do_get_outputs(self)
5951 def __init__(self, *args):
5953 __init__(Optimizer self, Model m, std::string name="Optimizer %1%") -> Optimizer
5954 __init__(Optimizer self) -> Optimizer
5956 if self.__class__ == Optimizer:
5960 _IMP_kernel.Optimizer_swiginit(self, _IMP_kernel.new_Optimizer(_self, *args))
5962 if self.__class__ != Optimizer:
5963 _director_objects.register(self)
5968 def optimize(self, max_steps):
5969 r"""optimize(Optimizer self, unsigned int max_steps) -> double"""
5970 return _IMP_kernel.Optimizer_optimize(self, max_steps)
5972 def set_stop_on_good_score(self, tf):
5973 r"""set_stop_on_good_score(Optimizer self, bool tf)"""
5974 return _IMP_kernel.Optimizer_set_stop_on_good_score(self, tf)
5976 def get_stop_on_good_score(self):
5977 r"""get_stop_on_good_score(Optimizer self) -> bool"""
5978 return _IMP_kernel.Optimizer_get_stop_on_good_score(self)
5980 def get_last_score(self):
5981 r"""get_last_score(Optimizer self) -> double"""
5982 return _IMP_kernel.Optimizer_get_last_score(self)
5984 def get_scoring_function(self):
5985 r"""get_scoring_function(Optimizer self) -> ScoringFunction"""
5986 return _IMP_kernel.Optimizer_get_scoring_function(self)
5987 def __get_optimizer_states(self):
return _list_util.VarList(getdimfunc=self.get_number_of_optimizer_states, getfunc=self.get_optimizer_state, erasefunc=self.erase_optimizer_state, appendfunc=self.add_optimizer_state, extendfunc=self.add_optimizer_states, clearfunc=self.clear_optimizer_states, indexfunc=self._python_index_optimizer_state)
5988 def __set_optimizer_states(self, obj): _list_util.set_varlist(self.optimizer_states, obj)
5989 def __del_optimizer_states(self): _list_util.del_varlist(self.optimizer_states)
5990 optimizer_states = property(__get_optimizer_states, __set_optimizer_states, __del_optimizer_states, doc=
"List of ##ucnames")
5992 def remove_optimizer_state(self, d):
5993 r"""remove_optimizer_state(Optimizer self, OptimizerState d)"""
5994 return _IMP_kernel.Optimizer_remove_optimizer_state(self, d)
5996 def _python_index_optimizer_state(self, d, start, stop):
5997 r"""_python_index_optimizer_state(Optimizer self, OptimizerState d, unsigned int start, unsigned int stop) -> unsigned int"""
5998 return _IMP_kernel.Optimizer__python_index_optimizer_state(self, d, start, stop)
6000 def remove_optimizer_states(self, d):
6001 r"""remove_optimizer_states(Optimizer self, IMP::OptimizerStates const & d)"""
6002 return _IMP_kernel.Optimizer_remove_optimizer_states(self, d)
6004 def set_optimizer_states(self, ps):
6005 r"""set_optimizer_states(Optimizer self, IMP::OptimizerStates const & ps)"""
6006 return _IMP_kernel.Optimizer_set_optimizer_states(self, ps)
6008 def set_optimizer_states_order(self, objs):
6009 r"""set_optimizer_states_order(Optimizer self, IMP::OptimizerStates const & objs)"""
6010 return _IMP_kernel.Optimizer_set_optimizer_states_order(self, objs)
6012 def add_optimizer_state(self, obj):
6013 r"""add_optimizer_state(Optimizer self, OptimizerState obj) -> unsigned int"""
6014 return _IMP_kernel.Optimizer_add_optimizer_state(self, obj)
6016 def add_optimizer_states(self, objs):
6017 r"""add_optimizer_states(Optimizer self, IMP::OptimizerStates const & objs)"""
6018 return _IMP_kernel.Optimizer_add_optimizer_states(self, objs)
6020 def clear_optimizer_states(self):
6021 r"""clear_optimizer_states(Optimizer self)"""
6022 return _IMP_kernel.Optimizer_clear_optimizer_states(self)
6024 def get_number_of_optimizer_states(self):
6025 r"""get_number_of_optimizer_states(Optimizer self) -> unsigned int"""
6026 return _IMP_kernel.Optimizer_get_number_of_optimizer_states(self)
6028 def get_has_optimizer_states(self):
6029 r"""get_has_optimizer_states(Optimizer self) -> bool"""
6030 return _IMP_kernel.Optimizer_get_has_optimizer_states(self)
6032 def get_optimizer_state(self, i):
6033 r"""get_optimizer_state(Optimizer self, unsigned int i) -> OptimizerState"""
6034 return _IMP_kernel.Optimizer_get_optimizer_state(self, i)
6036 def get_optimizer_states(self):
6037 r"""get_optimizer_states(Optimizer self) -> IMP::OptimizerStates"""
6038 return _IMP_kernel.Optimizer_get_optimizer_states(self)
6040 def erase_optimizer_state(self, i):
6041 r"""erase_optimizer_state(Optimizer self, unsigned int i)"""
6042 return _IMP_kernel.Optimizer_erase_optimizer_state(self, i)
6044 def reserve_optimizer_states(self, sz):
6045 r"""reserve_optimizer_states(Optimizer self, unsigned int sz)"""
6046 return _IMP_kernel.Optimizer_reserve_optimizer_states(self, sz)
6048 def set_scoring_function(self, sf):
6049 r"""set_scoring_function(Optimizer self, _ScoringFunctionAdaptor sf)"""
6050 return _IMP_kernel.Optimizer_set_scoring_function(self, sf)
6051 __swig_destroy__ = _IMP_kernel.delete_Optimizer
6053 r"""__del__(Optimizer self)"""
6055 _director_objects.cleanup()
6061 def do_optimize(self, ns):
6062 r"""do_optimize(Optimizer self, unsigned int ns) -> double"""
6063 return _IMP_kernel.Optimizer_do_optimize(self, ns)
6065 def update_states(self):
6066 r"""update_states(Optimizer self)"""
6067 return _IMP_kernel.Optimizer_update_states(self)
6070 r"""__str__(Optimizer self) -> std::string"""
6071 return _IMP_kernel.Optimizer___str__(self)
6074 r"""__repr__(Optimizer self) -> std::string"""
6075 return _IMP_kernel.Optimizer___repr__(self)
6079 return _object_cast_to_Optimizer(o)
6082 def get_type_name(self):
6083 return self.__class__.__name__
6084 def do_show(self, out):
6088 return VersionInfo(self.__module__,
6095 return _object_cast_to_Optimizer(o)
6097 def __disown__(self):
6099 _IMP_kernel.disown_Optimizer(self)
6100 return weakref.proxy(self)
6103 r"""do_destroy(Optimizer self)"""
6104 return _IMP_kernel.Optimizer_do_destroy(self)
6106 def handle_set_has_required_score_states(self, arg0):
6107 r"""handle_set_has_required_score_states(Optimizer self, bool arg0)"""
6108 return _IMP_kernel.Optimizer_handle_set_has_required_score_states(self, arg0)
6110 def do_get_interactions(self):
6111 r"""do_get_interactions(Optimizer self) -> IMP::ModelObjectsTemps"""
6112 return _IMP_kernel.Optimizer_do_get_interactions(self)
6115 _IMP_kernel.Optimizer_swigregister(Optimizer)
6116 class AttributeOptimizer(Optimizer):
6117 r"""Proxy of C++ IMP::AttributeOptimizer class."""
6119 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6121 def __init__(self, *args):
6123 __init__(AttributeOptimizer self, Model m, std::string name="Optimizer %1%") -> AttributeOptimizer
6124 __init__(AttributeOptimizer self) -> AttributeOptimizer
6126 if self.__class__ == AttributeOptimizer:
6130 _IMP_kernel.AttributeOptimizer_swiginit(self, _IMP_kernel.new_AttributeOptimizer(_self, *args))
6132 if self.__class__ != AttributeOptimizer:
6133 _director_objects.register(self)
6138 def get_optimized_attributes(self):
6139 r"""get_optimized_attributes(AttributeOptimizer self) -> IMP::FloatIndexes"""
6140 return _IMP_kernel.AttributeOptimizer_get_optimized_attributes(self)
6142 def set_value(self, fi, v):
6143 r"""set_value(AttributeOptimizer self, FloatIndex fi, double v)"""
6144 return _IMP_kernel.AttributeOptimizer_set_value(self, fi, v)
6146 def get_value(self, fi):
6147 r"""get_value(AttributeOptimizer self, FloatIndex fi) -> IMP::Float"""
6148 return _IMP_kernel.AttributeOptimizer_get_value(self, fi)
6150 def get_derivative(self, fi):
6151 r"""get_derivative(AttributeOptimizer self, FloatIndex fi) -> IMP::Float"""
6152 return _IMP_kernel.AttributeOptimizer_get_derivative(self, fi)
6154 def get_width(self, k):
6155 r"""get_width(AttributeOptimizer self, FloatKey k) -> double"""
6156 return _IMP_kernel.AttributeOptimizer_get_width(self, k)
6158 def set_scaled_value(self, fi, v):
6159 r"""set_scaled_value(AttributeOptimizer self, FloatIndex fi, IMP::Float v)"""
6160 return _IMP_kernel.AttributeOptimizer_set_scaled_value(self, fi, v)
6162 def get_scaled_value(self, fi):
6163 r"""get_scaled_value(AttributeOptimizer self, FloatIndex fi) -> double"""
6164 return _IMP_kernel.AttributeOptimizer_get_scaled_value(self, fi)
6166 def get_scaled_derivative(self, fi):
6167 r"""get_scaled_derivative(AttributeOptimizer self, FloatIndex fi) -> double"""
6168 return _IMP_kernel.AttributeOptimizer_get_scaled_derivative(self, fi)
6170 def clear_range_cache(self):
6171 r"""clear_range_cache(AttributeOptimizer self)"""
6172 return _IMP_kernel.AttributeOptimizer_clear_range_cache(self)
6175 r"""__str__(AttributeOptimizer self) -> std::string"""
6176 return _IMP_kernel.AttributeOptimizer___str__(self)
6179 r"""__repr__(AttributeOptimizer self) -> std::string"""
6180 return _IMP_kernel.AttributeOptimizer___repr__(self)
6184 return _object_cast_to_AttributeOptimizer(o)
6187 def get_type_name(self):
6188 return self.__class__.__name__
6189 def do_show(self, out):
6193 return VersionInfo(self.__module__,
6200 return _object_cast_to_AttributeOptimizer(o)
6202 __swig_destroy__ = _IMP_kernel.delete_AttributeOptimizer
6203 def __disown__(self):
6205 _IMP_kernel.disown_AttributeOptimizer(self)
6206 return weakref.proxy(self)
6209 r"""do_destroy(AttributeOptimizer self)"""
6210 return _IMP_kernel.AttributeOptimizer_do_destroy(self)
6212 def handle_set_has_required_score_states(self, arg0):
6213 r"""handle_set_has_required_score_states(AttributeOptimizer self, bool arg0)"""
6214 return _IMP_kernel.AttributeOptimizer_handle_set_has_required_score_states(self, arg0)
6216 def do_get_inputs(self):
6217 r"""do_get_inputs(AttributeOptimizer self) -> IMP::ModelObjectsTemp"""
6218 return _IMP_kernel.AttributeOptimizer_do_get_inputs(self)
6220 def do_get_outputs(self):
6221 r"""do_get_outputs(AttributeOptimizer self) -> IMP::ModelObjectsTemp"""
6222 return _IMP_kernel.AttributeOptimizer_do_get_outputs(self)
6224 def do_get_interactions(self):
6225 r"""do_get_interactions(AttributeOptimizer self) -> IMP::ModelObjectsTemps"""
6226 return _IMP_kernel.AttributeOptimizer_do_get_interactions(self)
6228 def do_optimize(self, ns):
6229 r"""do_optimize(AttributeOptimizer self, unsigned int ns) -> double"""
6230 return _IMP_kernel.AttributeOptimizer_do_optimize(self, ns)
6233 _IMP_kernel.AttributeOptimizer_swigregister(AttributeOptimizer)
6234 class ConfigurationSet(
Object):
6235 r"""Proxy of C++ IMP::ConfigurationSet class."""
6237 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6239 def __init__(self, *args):
6240 r"""__init__(ConfigurationSet self, Model m, std::string name="ConfigurationSet %1%") -> ConfigurationSet"""
6241 _IMP_kernel.ConfigurationSet_swiginit(self, _IMP_kernel.new_ConfigurationSet(*args))
6243 def save_configuration(self):
6244 r"""save_configuration(ConfigurationSet self)"""
6245 return _IMP_kernel.ConfigurationSet_save_configuration(self)
6247 def get_number_of_configurations(self):
6248 r"""get_number_of_configurations(ConfigurationSet self) -> unsigned int"""
6249 return _IMP_kernel.ConfigurationSet_get_number_of_configurations(self)
6251 def load_configuration(self, i):
6252 r"""load_configuration(ConfigurationSet self, int i)"""
6253 return _IMP_kernel.ConfigurationSet_load_configuration(self, i)
6255 def remove_configuration(self, i):
6256 r"""remove_configuration(ConfigurationSet self, unsigned int i)"""
6257 return _IMP_kernel.ConfigurationSet_remove_configuration(self, i)
6259 def get_model(self):
6260 r"""get_model(ConfigurationSet self) -> Model"""
6261 return _IMP_kernel.ConfigurationSet_get_model(self)
6264 r"""get_version_info(ConfigurationSet self) -> VersionInfo"""
6265 return _IMP_kernel.ConfigurationSet_get_version_info(self)
6266 __swig_destroy__ = _IMP_kernel.delete_ConfigurationSet
6269 r"""__str__(ConfigurationSet self) -> std::string"""
6270 return _IMP_kernel.ConfigurationSet___str__(self)
6273 r"""__repr__(ConfigurationSet self) -> std::string"""
6274 return _IMP_kernel.ConfigurationSet___repr__(self)
6278 return _object_cast_to_ConfigurationSet(o)
6282 _IMP_kernel.ConfigurationSet_swigregister(ConfigurationSet)
6283 class SaveToConfigurationSetOptimizerState(OptimizerState):
6284 r"""Proxy of C++ IMP::SaveToConfigurationSetOptimizerState class."""
6286 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6288 def __init__(self, cs):
6289 r"""__init__(SaveToConfigurationSetOptimizerState self, ConfigurationSet cs) -> SaveToConfigurationSetOptimizerState"""
6290 _IMP_kernel.SaveToConfigurationSetOptimizerState_swiginit(self, _IMP_kernel.new_SaveToConfigurationSetOptimizerState(cs))
6293 r"""get_version_info(SaveToConfigurationSetOptimizerState self) -> VersionInfo"""
6294 return _IMP_kernel.SaveToConfigurationSetOptimizerState_get_version_info(self)
6295 __swig_destroy__ = _IMP_kernel.delete_SaveToConfigurationSetOptimizerState
6298 r"""__str__(SaveToConfigurationSetOptimizerState self) -> std::string"""
6299 return _IMP_kernel.SaveToConfigurationSetOptimizerState___str__(self)
6302 r"""__repr__(SaveToConfigurationSetOptimizerState self) -> std::string"""
6303 return _IMP_kernel.SaveToConfigurationSetOptimizerState___repr__(self)
6307 return _object_cast_to_SaveToConfigurationSetOptimizerState(o)
6311 _IMP_kernel.SaveToConfigurationSetOptimizerState_swigregister(SaveToConfigurationSetOptimizerState)
6312 class Configuration(
Object):
6313 r"""Proxy of C++ IMP::Configuration class."""
6315 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6317 def __init__(self, *args):
6319 __init__(Configuration self, Model m, std::string name="Configuration %1%") -> Configuration
6320 __init__(Configuration self, Model m, Configuration base, std::string name="Configuration %1%") -> Configuration
6322 _IMP_kernel.Configuration_swiginit(self, _IMP_kernel.new_Configuration(*args))
6324 def load_configuration(self):
6325 r"""load_configuration(Configuration self)"""
6326 return _IMP_kernel.Configuration_load_configuration(self)
6328 def swap_configuration(self):
6329 r"""swap_configuration(Configuration self)"""
6330 return _IMP_kernel.Configuration_swap_configuration(self)
6333 r"""get_version_info(Configuration self) -> VersionInfo"""
6334 return _IMP_kernel.Configuration_get_version_info(self)
6335 __swig_destroy__ = _IMP_kernel.delete_Configuration
6338 r"""__str__(Configuration self) -> std::string"""
6339 return _IMP_kernel.Configuration___str__(self)
6342 r"""__repr__(Configuration self) -> std::string"""
6343 return _IMP_kernel.Configuration___repr__(self)
6347 return _object_cast_to_Configuration(o)
6351 _IMP_kernel.Configuration_swigregister(Configuration)
6353 r"""Proxy of C++ IMP::Sampler class."""
6355 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6357 def __init__(self, *args):
6358 r"""__init__(Sampler self, Model m, std::string name="Sampler %1%") -> Sampler"""
6359 if self.__class__ == Sampler:
6363 _IMP_kernel.Sampler_swiginit(self, _IMP_kernel.new_Sampler(_self, *args))
6365 if self.__class__ != Sampler:
6366 _director_objects.register(self)
6371 def create_sample(self):
6372 r"""create_sample(Sampler self) -> ConfigurationSet"""
6373 return _IMP_kernel.Sampler_create_sample(self)
6375 def get_scoring_function(self):
6376 r"""get_scoring_function(Sampler self) -> ScoringFunction"""
6377 return _IMP_kernel.Sampler_get_scoring_function(self)
6379 def set_scoring_function(self, sf):
6380 r"""set_scoring_function(Sampler self, _ScoringFunctionAdaptor sf)"""
6381 return _IMP_kernel.Sampler_set_scoring_function(self, sf)
6383 def get_model(self):
6384 r"""get_model(Sampler self) -> Model"""
6385 return _IMP_kernel.Sampler_get_model(self)
6387 def do_sample(self):
6388 r"""do_sample(Sampler self) -> ConfigurationSet"""
6389 return _IMP_kernel.Sampler_do_sample(self)
6390 __swig_destroy__ = _IMP_kernel.delete_Sampler
6393 r"""__str__(Sampler self) -> std::string"""
6394 return _IMP_kernel.Sampler___str__(self)
6397 r"""__repr__(Sampler self) -> std::string"""
6398 return _IMP_kernel.Sampler___repr__(self)
6402 return _object_cast_to_Sampler(o)
6405 def get_type_name(self):
6406 return self.__class__.__name__
6407 def do_show(self, out):
6411 return VersionInfo(self.__module__,
6418 return _object_cast_to_Sampler(o)
6420 def __disown__(self):
6422 _IMP_kernel.disown_Sampler(self)
6423 return weakref.proxy(self)
6426 r"""do_destroy(Sampler self)"""
6427 return _IMP_kernel.Sampler_do_destroy(self)
6430 _IMP_kernel.Sampler_swigregister(Sampler)
6431 class PairModifier(_ParticleInputs, _ParticleOutputs,
Object):
6432 r"""Proxy of C++ IMP::PairModifier class."""
6434 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6436 def __init__(self, *args):
6437 r"""__init__(PairModifier self, std::string name="PairModifier %1%") -> PairModifier"""
6438 if self.__class__ == PairModifier:
6442 _IMP_kernel.PairModifier_swiginit(self, _IMP_kernel.new_PairModifier(_self, *args))
6444 if self.__class__ != PairModifier:
6445 _director_objects.register(self)
6450 def apply_index(self, m, v):
6451 r"""apply_index(PairModifier self, Model m, IMP::ParticleIndexPair const & v)"""
6452 return _IMP_kernel.PairModifier_apply_index(self, m, v)
6454 def apply_indexes(self, m, o, lower_bound, upper_bound):
6455 r"""apply_indexes(PairModifier self, Model m, IMP::ParticleIndexPairs const & o, unsigned int lower_bound, unsigned int upper_bound)"""
6456 return _IMP_kernel.PairModifier_apply_indexes(self, m, o, lower_bound, upper_bound)
6458 def apply_indexes_moved(self, m, o, lower_bound, upper_bound, moved_pis, reset_pis):
6459 r"""apply_indexes_moved(PairModifier self, Model m, IMP::ParticleIndexPairs const & o, unsigned int lower_bound, unsigned int upper_bound, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
6460 return _IMP_kernel.PairModifier_apply_indexes_moved(self, m, o, lower_bound, upper_bound, moved_pis, reset_pis)
6463 r"""__str__(PairModifier self) -> std::string"""
6464 return _IMP_kernel.PairModifier___str__(self)
6467 r"""__repr__(PairModifier self) -> std::string"""
6468 return _IMP_kernel.PairModifier___repr__(self)
6472 return _object_cast_to_PairModifier(o)
6475 def get_type_name(self):
6476 return self.__class__.__name__
6477 def do_show(self, out):
6481 return VersionInfo(self.__module__,
6488 return _object_cast_to_PairModifier(o)
6490 __swig_destroy__ = _IMP_kernel.delete_PairModifier
6491 def __disown__(self):
6493 _IMP_kernel.disown_PairModifier(self)
6494 return weakref.proxy(self)
6496 def do_get_inputs(self, m, pis):
6497 r"""do_get_inputs(PairModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6498 return _IMP_kernel.PairModifier_do_get_inputs(self, m, pis)
6500 def do_get_outputs(self, m, pis):
6501 r"""do_get_outputs(PairModifier self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6502 return _IMP_kernel.PairModifier_do_get_outputs(self, m, pis)
6505 r"""do_destroy(PairModifier self)"""
6506 return _IMP_kernel.PairModifier_do_destroy(self)
6509 _IMP_kernel.PairModifier_swigregister(PairModifier)
6510 class PairScore(_ParticleInputs,
Object):
6511 r"""Proxy of C++ IMP::PairScore class."""
6513 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6515 def __init__(self, *args):
6516 r"""__init__(PairScore self, std::string name="PairScore %1%") -> PairScore"""
6517 if self.__class__ == PairScore:
6521 _IMP_kernel.PairScore_swiginit(self, _IMP_kernel.new_PairScore(_self, *args))
6523 if self.__class__ != PairScore:
6524 _director_objects.register(self)
6529 def evaluate_index(self, m, vt, da):
6530 r"""evaluate_index(PairScore self, Model m, IMP::ParticleIndexPair const & vt, DerivativeAccumulator da) -> double"""
6531 return _IMP_kernel.PairScore_evaluate_index(self, m, vt, da)
6533 def evaluate_indexes(self, m, o, da, lower_bound, upper_bound):
6534 r"""evaluate_indexes(PairScore self, Model m, IMP::ParticleIndexPairs const & o, DerivativeAccumulator da, unsigned int lower_bound, unsigned int upper_bound) -> double"""
6535 return _IMP_kernel.PairScore_evaluate_indexes(self, m, o, da, lower_bound, upper_bound)
6537 def evaluate_indexes_scores(self, m, o, da, lower_bound, upper_bound, score):
6538 r"""evaluate_indexes_scores(PairScore self, Model m, IMP::ParticleIndexPairs const & o, DerivativeAccumulator da, unsigned int lower_bound, unsigned int upper_bound, std::vector< double,std::allocator< double > > & score) -> double"""
6539 return _IMP_kernel.PairScore_evaluate_indexes_scores(self, m, o, da, lower_bound, upper_bound, score)
6541 def evaluate_indexes_delta(self, m, o, da, indexes, score):
6542 r"""evaluate_indexes_delta(PairScore self, Model m, IMP::ParticleIndexPairs const & o, DerivativeAccumulator da, std::vector< unsigned int,std::allocator< unsigned int > > const & indexes, std::vector< double,std::allocator< double > > & score) -> double"""
6543 return _IMP_kernel.PairScore_evaluate_indexes_delta(self, m, o, da, indexes, score)
6545 def evaluate_if_good_index(self, m, vt, da, max):
6546 r"""evaluate_if_good_index(PairScore self, Model m, IMP::ParticleIndexPair const & vt, DerivativeAccumulator da, double max) -> double"""
6547 return _IMP_kernel.PairScore_evaluate_if_good_index(self, m, vt, da, max)
6549 def evaluate_if_good_indexes(self, m, o, da, max, lower_bound, upper_bound):
6550 r"""evaluate_if_good_indexes(PairScore self, Model m, IMP::ParticleIndexPairs const & o, DerivativeAccumulator da, double max, unsigned int lower_bound, unsigned int upper_bound) -> double"""
6551 return _IMP_kernel.PairScore_evaluate_if_good_indexes(self, m, o, da, max, lower_bound, upper_bound)
6553 def create_current_decomposition(self, m, vt):
6554 r"""create_current_decomposition(PairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
6555 return _IMP_kernel.PairScore_create_current_decomposition(self, m, vt)
6557 def do_create_current_decomposition(self, m, vt):
6558 r"""do_create_current_decomposition(PairScore self, Model m, IMP::ParticleIndexPair const & vt) -> IMP::Restraints"""
6559 return _IMP_kernel.PairScore_do_create_current_decomposition(self, m, vt)
6560 __swig_destroy__ = _IMP_kernel.delete_PairScore
6563 r"""__str__(PairScore self) -> std::string"""
6564 return _IMP_kernel.PairScore___str__(self)
6567 r"""__repr__(PairScore self) -> std::string"""
6568 return _IMP_kernel.PairScore___repr__(self)
6572 return _object_cast_to_PairScore(o)
6575 def get_type_name(self):
6576 return self.__class__.__name__
6577 def do_show(self, out):
6581 return VersionInfo(self.__module__,
6588 return _object_cast_to_PairScore(o)
6590 def __disown__(self):
6592 _IMP_kernel.disown_PairScore(self)
6593 return weakref.proxy(self)
6595 def do_get_inputs(self, m, pis):
6596 r"""do_get_inputs(PairScore self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6597 return _IMP_kernel.PairScore_do_get_inputs(self, m, pis)
6600 r"""do_destroy(PairScore self)"""
6601 return _IMP_kernel.PairScore_do_destroy(self)
6604 _IMP_kernel.PairScore_swigregister(PairScore)
6605 class PairPredicate(_ParticleInputs,
Object):
6606 r"""Proxy of C++ IMP::PairPredicate class."""
6608 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6610 def __init__(self, *args):
6611 r"""__init__(PairPredicate self, std::string name="PairPredicate %1%") -> PairPredicate"""
6612 if self.__class__ == PairPredicate:
6616 _IMP_kernel.PairPredicate_swiginit(self, _IMP_kernel.new_PairPredicate(_self, *args))
6618 if self.__class__ != PairPredicate:
6619 _director_objects.register(self)
6624 def setup_for_get_value_index_in_batch(self, arg0):
6625 r"""setup_for_get_value_index_in_batch(PairPredicate self, Model arg0)"""
6626 return _IMP_kernel.PairPredicate_setup_for_get_value_index_in_batch(self, arg0)
6628 def get_value_index_in_batch(self, m, vt):
6629 r"""get_value_index_in_batch(PairPredicate self, Model m, IMP::ParticleIndexPair const & vt) -> int"""
6630 return _IMP_kernel.PairPredicate_get_value_index_in_batch(self, m, vt)
6632 def __call__(self, m, vt):
6633 r"""__call__(PairPredicate self, Model m, IMP::ParticleIndexPair const & vt) -> int"""
6634 return _IMP_kernel.PairPredicate___call__(self, m, vt)
6636 def get_value_index(self, *args):
6638 get_value_index(PairPredicate self, Model m, IMP::ParticleIndexPair const & vt) -> int
6639 get_value_index(PairPredicate self, Model m, IMP::ParticleIndexPairs const & o) -> IMP::Ints
6641 return _IMP_kernel.PairPredicate_get_value_index(self, *args)
6642 __swig_destroy__ = _IMP_kernel.delete_PairPredicate
6645 r"""__str__(PairPredicate self) -> std::string"""
6646 return _IMP_kernel.PairPredicate___str__(self)
6649 r"""__repr__(PairPredicate self) -> std::string"""
6650 return _IMP_kernel.PairPredicate___repr__(self)
6654 return _object_cast_to_PairPredicate(o)
6657 def get_type_name(self):
6658 return self.__class__.__name__
6659 def do_show(self, out):
6663 return VersionInfo(self.__module__,
6670 return _object_cast_to_PairPredicate(o)
6672 def __disown__(self):
6674 _IMP_kernel.disown_PairPredicate(self)
6675 return weakref.proxy(self)
6677 def do_get_inputs(self, m, pis):
6678 r"""do_get_inputs(PairPredicate self, Model m, IMP::ParticleIndexes const & pis) -> IMP::ModelObjectsTemp"""
6679 return _IMP_kernel.PairPredicate_do_get_inputs(self, m, pis)
6682 r"""do_destroy(PairPredicate self)"""
6683 return _IMP_kernel.PairPredicate_do_destroy(self)
6686 _IMP_kernel.PairPredicate_swigregister(PairPredicate)
6687 class PairContainer(Container):
6688 r"""Proxy of C++ IMP::PairContainer class."""
6690 thisown = property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
"The membership flag")
6692 def apply_generic(self, m):
6693 r"""apply_generic(PairContainer self, PairModifier m)"""
6694 return _IMP_kernel.PairContainer_apply_generic(self, m)
6696 def apply_generic_moved(self, m, moved_pis, reset_pis):
6697 r"""apply_generic_moved(PairContainer self, PairModifier m, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
6698 return _IMP_kernel.PairContainer_apply_generic_moved(self, m, moved_pis, reset_pis)
6700 def apply(self, sm):
6701 r"""apply(PairContainer self, PairModifier sm)"""
6702 return _IMP_kernel.PairContainer_apply(self, sm)
6704 def apply_moved(self, sm, moved_pis, reset_pis):
6705 r"""apply_moved(PairContainer self, PairModifier sm, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
6706 return _IMP_kernel.PairContainer_apply_moved(self, sm, moved_pis, reset_pis)
6708 def get_range_indexes(self):
6709 r"""get_range_indexes(PairContainer self) -> IMP::ParticleIndexPairs"""
6710 return _IMP_kernel.PairContainer_get_range_indexes(self)
6712 def get_contents(self):
6713 r"""get_contents(PairContainer self) -> IMP::ParticleIndexPairs const &"""
6714 return _IMP_kernel.PairContainer_get_contents(self)
6717 r"""get_indexes(PairContainer self) -> IMP::ParticleIndexPairs"""
6718 return _IMP_kernel.PairContainer_get_indexes(self)
6720 def get(self, *args):
6722 get(PairContainer self) -> IMP::ParticlePairsTemp
6723 get(PairContainer self, unsigned int i) -> IMP::ParticlePair
6725 return _IMP_kernel.PairContainer_get(self, *args)
6727 def get_number(self):
6728 r"""get_number(PairContainer self) -> unsigned int"""
6729 return _IMP_kernel.PairContainer_get_number(self)
6731 def __init__(self, *args):
6733 __init__(PairContainer self, Model m, std::string name="PairContainer %1%") -> PairContainer
6734 __init__(PairContainer self) -> PairContainer
6736 if self.__class__ == PairContainer:
6740 _IMP_kernel.PairContainer_swiginit(self, _IMP_kernel.new_PairContainer(_self, *args))
6742 if self.__class__ != PairContainer:
6743 _director_objects.register(self)
6748 def do_apply(self, sm):
6749 r"""do_apply(PairContainer self, PairModifier sm)"""
6750 return _IMP_kernel.PairContainer_do_apply(self, sm)
6752 def do_apply_moved(self, sm, moved_pis, reset_pis):
6753 r"""do_apply_moved(PairContainer self, PairModifier sm, IMP::ParticleIndexes const & moved_pis, IMP::ParticleIndexes const & reset_pis)"""
6754 return _IMP_kernel.PairContainer_do_apply_moved(self, sm, moved_pis, reset_pis)
6756 def do_get_provides_access(self):
6757 r"""do_get_provides_access(PairContainer self) -> bool"""
6758 return _IMP_kernel.PairContainer_do_get_provides_access(self)
6759 __swig_destroy__ = _IMP_kernel.delete_PairContainer
6762 r"""__str__(PairContainer self) -> std::string"""
6763 return _IMP_kernel.PairContainer___str__(self)
6766 r"""__repr__(PairContainer self) -> std::string"""
6767 return _IMP_kernel.PairContainer___repr__(self)
6771 return _object_cast_to_PairContainer(o)
6774 def get_type_name(self):
6775 return self.__class__.__name__
6776 def do_show(self, out):
6780 return VersionInfo(self.__module__,
6787 return _object_cast_to_PairContainer(o)