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IMP Reference Guide  develop.63e71f5352,2022/07/06
The Integrative Modeling Platform
Selection.h File Reference

Select a subset of a hierarchy. More...

#include <IMP/atom/atom_config.h>
#include <IMP/atom/internal/SelectionPredicate.h>
#include "Atom.h"
#include "Hierarchy.h"
#include "Residue.h"
#include "element.h"
#include "Representation.h"
#include <IMP/algebra/algebra_config.h>
#include <IMP/InputAdaptor.h>
#include <IMP/core/Typed.h>
#include <IMP/core/XYZR.h>
#include <IMP/display/declare_Geometry.h>
#include <boost/unordered_map.hpp>
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Classes

class  IMP::atom::Selection
 Select hierarchy particles identified by the biological name. More...
 
class  IMP::atom::SelectionGeometry
 Display a Selection. More...
 

Namespaces

 IMP
 Base functionality and abstract base classes for representation, scoring and sampling.
 
 IMP::atom
 Functionality for loading, creating, manipulating and scoring atomic structures.
 

Typedefs

typedef IMP::Vector< Selection > IMP::atom::Selections
 

Functions

Restraint * IMP::atom::create_connectivity_restraint (const Selections &s, double k, std::string name="Connectivity%1%")
 Create a restraint connecting the selections. More...
 
Restraint * IMP::atom::create_connectivity_restraint (const Selections &s, double x0, double k, std::string name="Connectivity%1%")
 Create a restraint connecting the selections. More...
 
core::XYZR IMP::atom::create_cover (const Selection &s, std::string name=std::string())
 
Restraint * IMP::atom::create_distance_restraint (const Selection &n0, const Selection &n1, double x0, double k, std::string name="Distance%1%")
 
Restraint * IMP::atom::create_excluded_volume_restraint (const Selections &s)
 Create an excluded volume restraint for a list of selections. More...
 
Restraint * IMP::atom::create_internal_connectivity_restraint (const Selection &s, double k, std::string name="Connectivity%1%")
 Create a restraint connecting the selection. More...
 
Restraint * IMP::atom::create_internal_connectivity_restraint (const Selection &s, double x0, double k, std::string name="Connectivity%1%")
 Create a restraint connecting the selection. More...
 
Hierarchies IMP::atom::get_leaves (const Selection &h)
 
double IMP::atom::get_mass (const Selection &s)
 Get the total mass of a hierarchy, in Daltons. More...
 
double IMP::atom::get_radius_of_gyration (const Selection &s)
 
double IMP::atom::get_surface_area (const Selection &s)
 Get the total surface area of a hierarchy, in square angstroms. More...
 
double IMP::atom::get_volume (const Selection &s)
 Get the total volume of a hierarchy, in cubic angstroms. More...
 

Detailed Description

Select a subset of a hierarchy.

Copyright 2007-2022 IMP Inventors. All rights reserved.

Definition in file Selection.h.