IMP Directory Reference

Directory dependency graph for IMP:

Directories
directory	algebra
directory	atom
directory	base
directory	benchmark
directory	cgal
directory	cnmultifit
directory	container
directory	core
directory	display
directory	domino
directory	em
directory	em2d
directory	EMageFit
directory	example
directory	foxs
directory	gsl
directory	integrative_docking
directory	isd
directory	kernel
directory	kinematics
directory	kmeans
directory	misc
directory	modeller
directory	mpi
directory	multi_state
directory	multifit
directory	parallel
directory	pepdock
directory	pmi
directory	rmf
directory	rotamer
directory	saxs
directory	saxs_merge
directory	score_functor
directory	scratch
directory	statistics
directory	symmetry
directory	test

Files
file	algebra.h [code]
	Include all non-deprecated headers in IMP.algebra.
file	Array.h [code]
	Classes to handle static sized arrays of things.
file	Atom.h [code]
	Include all non-deprecated headers in IMP.atom.
file	AttributeOptimizer.h [code]
	Base class for all optimizers.
file	base.h [code]
file	base_macros.h [code]
	Various general useful macros for IMP.
file	base_statistics.h [code]
	Manage statistics on IMP runs.
file	base_types.h [code]
	Basic types used by IMP.
file	base_utility.h [code]
	Various general useful functions for IMP.
file	benchmark.h [code]
	Include all non-deprecated headers in IMP.benchmark.
file	bracket_macros.h [code]
	Various general useful macros for IMP.
file	cache.h [code]
	Various general useful functions for IMP.
file	cgal.h [code]
	Include all non-deprecated headers in IMP.cgal.
file	check_macros.h [code]
	Exception definitions and assertions.
file	cnmultifit.h [code]
	Include all non-deprecated headers in IMP.cnmultifit.
file	comparison_macros.h [code]
	Various general useful macros for IMP.
file	compiler_macros.h [code]
	Various compiler workarounds.
file	Configuration.h [code]
	Store a set of configurations of the model.
file	ConfigurationSet.h [code]
	Store a set of configurations of the model.
file	constants.h [code]
	Various useful constants.
file	Constraint.h [code]
	A base class for constraints.
file	ConstVector.h [code]
	A beyesian infererence-based sampler.
file	container.h [code]
	Include all non-deprecated headers in IMP.container.
file	container_base.h [code]
	Abstract base class for containers of particles.
file	container_macros.h [code]
	Macros to define containers of objects.
file	core.h [code]
	Include all non-deprecated headers in IMP.core.
file	CreateLogContext.h [code]
	Logging and error reporting support.
file	Decorator.h [code]
	The base class for decorators.
file	decorator_macros.h [code]
	Various general useful macros for IMP.
file	dependency_graph.h [code]
	Build dependency graphs on models.
file	deprecation.h [code]
	Control display of deprecation information.
file	deprecation_macros.h [code]
	Control display of deprecation information.
file	DerivativeAccumulator.h [code]
	Class for adding derivatives from restraints to the model.
file	display.h [code]
	Include all non-deprecated headers in IMP.display.
file	domino.h [code]
	Include all non-deprecated headers in IMP.domino.
file	doxygen_macros.h [code]
	Various general useful macros for IMP.
file	em.h [code]
	Include all non-deprecated headers in IMP.em.
file	em2d.h [code]
	Include all non-deprecated headers in IMP.em2d.
file	EMageFit.h [code]
	Include all non-deprecated headers in IMP.EMageFit.
file	enums.h [code]
	Basic types used by IMP.
file	example.h [code]
	Include all non-deprecated headers in IMP.example.
file	exception.h [code]
	Exception definitions and assertions.
file	file.h [code]
	Handling of file input/output.
file	Flag.h [code]
	Various general useful macros for IMP.
file	flags.h [code]
	Various general useful macros for IMP.
file	FloatIndex.h [code]
	Various general useful functions for IMP.
file	foxs.h [code]
	Include all non-deprecated headers in IMP.foxs.
file	functor.h [code]
	Various important functionality for implementing decorators.
file	generic.h [code]
	Various important functionality for implementing decorators.
file	graph_macros.h [code]
	Various general useful macros for IMP.
file	gsl.h [code]
	Include all non-deprecated headers in IMP.gsl.
file	hash.h [code]
	IO support.
file	hash_macros.h [code]
	Various general useful macros for IMP.
file	Index.h [code]
	Basic types used by IMP.
file	input_output.h [code]
	Single variable function.
file	InputAdaptor.h [code]
	Basic types used by IMP.
file	integrative_docking.h [code]
	Include all non-deprecated headers in IMP.integrative_docking.
file	io.h [code]
	Handle read/write of Model data from/to files.
file	isd.h [code]
	Include all non-deprecated headers in IMP.isd.
file	kernel.h [code]
file	kernel_config.h [code]
file	Key.h [code]
	Keys to cache lookup of attribute strings.
file	kinematics.h [code]
	Include all non-deprecated headers in IMP.kinematics.
file	KMeans.h [code]
	Include all non-deprecated headers in IMP.kmeans.
file	live_objects.h [code]
	A shared base class to help in debugging and things.
file	log.h [code]
	Logging and error reporting support.
file	log_macros.h [code]
	Logging and error reporting support.
file	macros.h [code]
	Various general useful macros for IMP.
file	math.h [code]
	Declare an efficient stl-compatible map.
file	misc.h [code]
	Include all non-deprecated headers in IMP.misc.
file	Model.h [code]
	Storage of a model, its restraints, constraints and particles.
file	model_object_helpers.h [code]
	Single variable function.
file	modeller.h [code]
	Include all non-deprecated headers in IMP.modeller.
file	ModelObject.h [code]
	Single variable function.
file	mpi.h [code]
	Include all non-deprecated headers in IMP.mpi.
file	multi_state.h [code]
	Include all non-deprecated headers in IMP.multi_state.
file	multifit.h [code]
	Include all non-deprecated headers in IMP.multifit.
file	NonCopyable.h [code]
	Basic types used by IMP.
file	nullptr.h [code]
	Provide a nullptr keyword analog.
file	nullptr_macros.h [code]
	Provide a nullptr keyword analog.
file	Object.h [code]
	A shared base class to help in debugging and things.
file	object_cast.h [code]
	A shared base class to help in debugging and things.
file	object_macros.h [code]
	Various general useful macros for IMP.
file	Optimizer.h [code]
	Base class for all optimizers.
file	OptimizerState.h [code]
	Shared optimizer state.
file	pair_macros.h [code]
	Macros for various classes.
file	PairContainer.h [code]
	A container for Pairs.
file	PairDerivativeModifier.h [code]
	A Modifier on ParticlePairsTemp.
file	PairModifier.h [code]
	A Modifier on ParticlePairsTemp.
file	PairPredicate.h [code]
	Define PairPredicate.
file	PairScore.h [code]
	Define PairScore.
file	parallel.h [code]
	Include all non-deprecated headers in IMP.parallel.
file	Particle.h [code]
	Classes to handle individual model particles. (Note that implementation of inline functions is in internal)
file	particle_index.h [code]
	Various general useful functions for IMP.
file	ParticleTuple.h [code]
	Classes to handle individual model particles.
file	pepdock.h [code]
	Include all non-deprecated headers in IMP.pepdock.
file	piecewise_linear_distribution.h [code]
	boost piecewise linear.
file	pmi.h [code]
	Include all non-deprecated headers in IMP.pmi.
file	Pointer.h [code]
	A nullptr-initialized pointer to an IMP Object.
file	python_only.h [code]
	Build dependency graphs on models.
file	quad_macros.h [code]
	Macros for various classes.
file	QuadContainer.h [code]
	A container for Quads.
file	QuadDerivativeModifier.h [code]
	A Modifier on ParticleQuadsTemp.
file	QuadModifier.h [code]
	A Modifier on ParticleQuadsTemp.
file	QuadPredicate.h [code]
	Define QuadPredicate.
file	QuadScore.h [code]
	Define QuadScore.
file	RAII.h [code]
	Basic types used by IMP.
file	raii_macros.h [code]
	Various general useful macros for IMP.
file	random.h [code]
	Random number generators used by IMP.
file	random_utils.h [code]
	Random number utility functions used by IMP.
file	ref_counted_macros.h [code]
	Various general useful macros for IMP.
file	Refiner.h [code]
	Refine a particle into a list of particles.
file	Restraint.h [code]
	Abstract base class for all restraints.
file	RestraintSet.h [code]
	Used to hold a set of related restraints.
file	rmf.h [code]
	Include all non-deprecated headers in IMP.rmf.
file	rotamer.h [code]
	Include all non-deprecated headers in IMP.rotamer.
file	Sampler.h [code]
	Base class for all samplers.
file	saxs.h [code]
	Include all non-deprecated headers in IMP.saxs.
file	saxs_merge.h [code]
	Include all non-deprecated headers in IMP.saxs_merge.
file	scoped.h [code]
	Various general useful functions for IMP.
file	score_functor.h [code]
	Include all non-deprecated headers in IMP.score_functor.
file	ScoreAccumulator.h [code]
	Class for adding scores from restraints to the model.
file	ScoreState.h [code]
	Shared score state.
file	ScoringFunction.h [code]
	Represents a scoring function on the model.
file	scratch.h [code]
	Include all non-deprecated headers in IMP.scratch.
file	set_map_macros.h [code]
	Handle read/write of Model data from/to files.
file	SetCheckState.h [code]
	Checking and error reporting support.
file	SetLogState.h [code]
	Logging and error reporting support.
file	Showable.h [code]
	IO support.
file	showable_macros.h [code]
	Various general useful macros for IMP.
file	singleton_macros.h [code]
	Macros for various classes.
file	SingletonContainer.h [code]
	A container for Singletons.
file	SingletonDerivativeModifier.h [code]
	A Modifier on ParticlesTemp.
file	SingletonModifier.h [code]
	A Modifier on ParticlesTemp.
file	SingletonPredicate.h [code]
	Define SingletonPredicate.
file	SingletonScore.h [code]
	Define SingletonScore.
file	statistics.h [code]
	Include all non-deprecated headers in IMP.statistics.
file	swap_macros.h [code]
	Various general useful macros for IMP.
file	swig_macros.h [code]
	Various general useful macros for IMP.
file	symmetry.h [code]
	Include all non-deprecated headers in IMP.symmetry.
file	test.h [code]
	Include all non-deprecated headers in IMP.test.
file	thread_macros.h [code]
	Control for OpenMP.
file	threads.h [code]
	Control for using multiple threads in IMP.
file	triplet_macros.h [code]
	Macros for various classes.
file	TripletContainer.h [code]
	A container for Triplets.
file	TripletDerivativeModifier.h [code]
	A Modifier on ParticleTripletsTemp.
file	TripletModifier.h [code]
	A Modifier on ParticleTripletsTemp.
file	TripletPredicate.h [code]
	Define TripletPredicate.
file	TripletScore.h [code]
	Define TripletScore.
file	tuple_macros.h [code]
	Various general useful macros for IMP.
file	types.h [code]
	Basic types used by IMP.
file	UnaryFunction.h [code]
	Single variable function.
file	Undecorator.h [code]
	The base class for decorators.
file	utility.h [code]
	For backwards compatibility.
file	utility_macros.h [code]
	Various general useful macros for IMP.
file	Value.h [code]
	Basic types used by IMP.
file	value_macros.h [code]
	Various general useful macros for IMP.
file	Vector.h [code]
	A class for storing lists of IMP items.
file	vector_property_map.h [code]
	Include the correct headers to get the boost vector_property_map.
file	VersionInfo.h [code]
	Version and authorship of IMP objects.
file	warning_macros.h [code]
	Various general useful macros for IMP.
file	WarningContext.h [code]
	Logging and error reporting support.
file	WeakPointer.h [code]
	A nullptr-initialized pointer to an Object.