doc/ref/isd_8h_source.html

 /**

  *  \file IMP/isd.h

  *  \brief Include all non-deprecated headers in IMP.isd.

  *

  *  Copyright 2007-2015 IMP Inventors. All rights reserved.

  */


 #ifndef IMP_ISD_H

 #define IMP_ISD_H

 #include <IMP/isd/AmbiguousNOERestraint.h>

 #include <IMP/isd/AmbiguousRestraint.h>

 #include <IMP/isd/AtomicCrossLinkMSRestraint.h>

 #include <IMP/isd/CrossLinkData.h>

 #include <IMP/isd/CrossLinkMSRestraint.h>

 #include <IMP/isd/CysteineCrossLinkData.h>

 #include <IMP/isd/CysteineCrossLinkRestraint.h>

 #include <IMP/isd/FNormal.h>

 #include <IMP/isd/FretData.h>

 #include <IMP/isd/FretRestraint.h>

 #include <IMP/isd/GaussianEMRestraint.h>

 #include <IMP/isd/GaussianProcessInterpolation.h>

 #include <IMP/isd/GaussianProcessInterpolationRestraint.h>

 #include <IMP/isd/GaussianRestraint.h>

 #include <IMP/isd/HybridMonteCarlo.h>

 #include <IMP/isd/JeffreysRestraint.h>

 #include <IMP/isd/LogWrapper.h>

 #include <IMP/isd/LognormalAmbiguousRestraint.h>

 #include <IMP/isd/LognormalRestraint.h>

 #include <IMP/isd/MarginalHBondRestraint.h>

 #include <IMP/isd/MarginalNOERestraint.h>

 #include <IMP/isd/MolecularDynamics.h>

 #include <IMP/isd/MolecularDynamicsMover.h>

 #include <IMP/isd/MultivariateFNormalSufficient.h>

 #include <IMP/isd/NOERestraint.h>

 #include <IMP/isd/Nuisance.h>

 #include <IMP/isd/RepulsiveDistancePairScore.h>

 #include <IMP/isd/Scale.h>

 #include <IMP/isd/Switching.h>

 #include <IMP/isd/TALOSRestraint.h>

 #include <IMP/isd/UniformPrior.h>

 #include <IMP/isd/Weight.h>

 #include <IMP/isd/WeightMover.h>

 #include <IMP/isd/WeightRestraint.h>

 #include <IMP/isd/bivariate_functions.h>

 #include <IMP/isd/em_utilities.h>

 #include <IMP/isd/univariate_functions.h>

 #include <IMP/isd/vonMises.h>

 #include <IMP/isd/vonMisesKappaConjugateRestraint.h>

 #include <IMP/isd/vonMisesKappaJeffreysRestraint.h>

 #include <IMP/isd/vonMisesSufficient.h>

 #endif /* IMP_ISD_H */

vonMisesSufficient.h
Normal distribution of Function.

vonMisesKappaJeffreysRestraint.h
Jeffreys prior for  in the von Mises distribution.

GaussianProcessInterpolation.h
Normal distribution of Function.

CrossLinkData.h
Normal distribution of Function.

FNormal.h
Normal distribution of Function.

AtomicCrossLinkMSRestraint.h
A pmf based likelihood function with prior knowledge on the flase positive rate.

MarginalNOERestraint.h
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...

MarginalHBondRestraint.h
A lognormal restraint that uses the ISPA model to model HBond-derived distance fit.

AmbiguousRestraint.h
An implementation of the d-norm to make an ambiguous restraint.

UniformPrior.h
A restraint on a scale parameter.

em_utilities.h
Common scoring functions.

Switching.h
A decorator for switching parameters particles.

GaussianEMRestraint.h
Restraint two sets of gaussians (model and gmm derived from EM map)

Scale.h
A decorator for scale parameters particles.

MolecularDynamicsMover.h
A modifier which perturbs XYZs or Nuisances with a constant energy MD simulation. ...

CrossLinkMSRestraint.h
A pmf based likelihood function with prior knowledge on the flase positive rate.

MolecularDynamics.h
Simple molecular dynamics optimizer.

Nuisance.h
A decorator for nuisance parameters particles.

bivariate_functions.h
Classes for general functions.

MultivariateFNormalSufficient.h
Normal distribution of Function.

vonMises.h
Normal distribution of Function.

CysteineCrossLinkData.h
Normal distribution of Function.

HybridMonteCarlo.h
A hybrid monte carlo implementation.

WeightMover.h
A mover that perturbs a Weight particle.

NOERestraint.h
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...

LognormalAmbiguousRestraint.h
A sigmoid shaped restraint between residues with discrete classifier and ambiguous assignment...

GaussianRestraint.h
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...

WeightRestraint.h
Put description here.

AmbiguousNOERestraint.h
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...

Weight.h
Add weights for a set of states to a particle.

FretRestraint.h
FRET_R restraint to use in vivo FRET data.

JeffreysRestraint.h
A restraint on a scale parameter.

CysteineCrossLinkRestraint.h
A sigmoid shaped restraint between residues with discrete classifier and ambiguous assignment...

TALOSRestraint.h
TALOS dihedral restraint between four particles.

GaussianProcessInterpolationRestraint.h
Restraint and ScoreState for GaussianProcessInterpolation.

LognormalRestraint.h
A lognormal restraint that uses the ISPA model to model NOE-derived distance fit. ...

RepulsiveDistancePairScore.h
A simple quadric repulsive term between two atoms. Restraint is zero when the distance equals the sum...

FretData.h
Auxiliary class useful for FRET_R restraint.

LogWrapper.h
Calculate the -Log of a list of restraints.

univariate_functions.h
Classes for general functions.

vonMisesKappaConjugateRestraint.h
Conjugate prior for  in the von Mises distribution.