IMP.spatiotemporal.analysis Namespace Reference

Functions to analyze spatiotemporal models. More...

Detailed Description

Functions to analyze spatiotemporal models.

Functions
def	precision
	Function that reads in one labeled_pdf from create_DAG and returns the precision, defined as the sum of the squared probability of all trajectories. More...
def	temporal_precision
	Function that reads in two labeled_pdfs from create_DAG and returns the temporal_precision, defined as the probability overlap between two pathway models. More...

Function Documentation

def IMP.spatiotemporal.analysis.precision	(		labeled_pdf_fn,
			output_fn = 'precision.txt'
	)

Function that reads in one labeled_pdf from create_DAG and returns the precision, defined as the sum of the squared probability of all trajectories.

Parameters

labeled_pdf_fn	string, labeled pdf file name (including the path); labeled_pdf from the total model
output_fn	string, name of output file (default: 'temporal_precision.txt')

Returns

temporal precision, written to output_fn

Note

This function is only available in Python.

Definition at line 81 of file spatiotemporal/Analysis.py.

def IMP.spatiotemporal.analysis.temporal_precision	(		labeled_pdf1_fn,
			labeled_pdf2_fn,
			output_fn = 'temporal_precision.txt'
	)

Function that reads in two labeled_pdfs from create_DAG and returns the temporal_precision, defined as the probability overlap between two pathway models.

Parameters

labeled_pdf1_fn	string, labeled pdf file name (including the path); labeled_pdf from one independent sampling
labeled_pdf2_fn	string, labeled pdf file name (including the path); labeled_pdf from another independent sampling
output_fn	string, name of output file (default: 'temporal_precision.txt')

Returns

temporal precision, written to output_fn

Note

This function is only available in Python.

Definition at line 17 of file spatiotemporal/Analysis.py.